Rh7DG019500

hydrophobic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004002
Physical Location & Seq
Reverse (-)
1559211 .. 1559932
722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG019500.1

Sequence Viewer

Length: 315 bp
ATGAGTACAGCAACCTTTATCGACATTATCATCGGCATCCTCTTGCCTCCTCTTGGGGTCTTCCTGTGGTTTGGCTGCAGGGTGGAGTTCTGGATCTGTCTGATACTGACTCTTTTTGGTTACATTCCTGAGATCATCTATGCTATCTGGGATATCACCACTCATACTTCATTTTCTCTGGTAGTTGTACAGATGAGAAAGGCACGTAAGGCCTATAGTTTTCACTGTTGGATCAGATATCACTTGTTTGGTGTAGCCAATAATGTAGTGCGCGCGTCATTTCTCCTTTGTATCAAGTTCGTTGTGTGTGTGTGA

Protein Analysis

104

Amino Acids

12.05

Weight (kDa)

8.97

Isoelectric Point (pI)

30.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 6 - 51 1.4e-15 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 273, 275
AclWI GGATC 2 cut(s) 101, 239
AfaI GTAC 2 cut(s) 7, 189
AfiI CCNNNNNNNGG 1 cut(s) 53
AlwI GGATC 2 cut(s) 101, 239
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 75
AspLEI GCGC 2 cut(s) 273, 275
AsuHPI GGTGA 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 62
BfmI CTRYAG 2 cut(s) 76, 214
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 52
BsaAI YACGTR 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 120
BsePI GCGCGC 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 2 cut(s) 273, 275
BshFI GGCC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 53
BsnI GGCC 1 cut(s) 212
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 3 cut(s) 93, 132, 231
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 2 cut(s) 273, 275
BspMAI CTGCAG 1 cut(s) 80
BspPI GGATC 2 cut(s) 101, 239
BsrGI TGTACA 1 cut(s) 187
BssHII GCGCGC 1 cut(s) 271
BssMI GATC 3 cut(s) 93, 132, 231
Bst4CI ACNGT 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 2 cut(s) 273, 275
BstHHI GCGC 2 cut(s) 273, 275
BstKTI GATC 3 cut(s) 96, 135, 234
BstMBI GATC 3 cut(s) 93, 132, 231
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstSFI CTRYAG 2 cut(s) 76, 214
BstUI CGCG 2 cut(s) 273, 275
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 2 cut(s) 273, 275
CseI GACGC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 6, 188
CviJI RGCY 3 cut(s) 75, 212, 257
CviKI_1 RGCY 3 cut(s) 75, 212, 257
CviQI GTAC 2 cut(s) 6, 188
DdeI CTNAG 1 cut(s) 129
DpnI GATC 3 cut(s) 95, 134, 233
DpnII GATC 3 cut(s) 93, 132, 231
Eco147I AGGCCT 1 cut(s) 212
Eco32I GATATC 2 cut(s) 154, 239
EcoRV GATATC 2 cut(s) 154, 239
FaiI YATR 3 cut(s) 141, 165, 216
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 76
GlaI GCGC 2 cut(s) 272, 274
GluI GCNGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 212
HgaI GACGC 1 cut(s) 264
HhaI GCGC 2 cut(s) 273, 275
Hin6I GCGC 2 cut(s) 271, 273
HinP1I GCGC 2 cut(s) 271, 273
HinfI GANTC 1 cut(s) 109
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 102, 236
Hpy188III TCNNGA 2 cut(s) 91, 128
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 205
HspAI GCGC 2 cut(s) 271, 273
Kzo9I GATC 3 cut(s) 93, 132, 231
LpnPI CCDG 6 cut(s) 64, 76, 77, 133, 141, 164
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 45
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 119
MalI GATC 3 cut(s) 95, 134, 233
MboI GATC 3 cut(s) 93, 132, 231
MboII GAAGA 1 cut(s) 52
MflI RGATCY 1 cut(s) 93
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 3 cut(s) 50, 57, 60
MvnI CGCG 2 cut(s) 273, 275
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 3 cut(s) 93, 132, 231
PauI GCGCGC 1 cut(s) 271
PceI AGGCCT 1 cut(s) 212
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Ppu21I YACGTR 1 cut(s) 206
PstI CTGCAG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 93
PteI GCGCGC 1 cut(s) 271
RsaI GTAC 2 cut(s) 7, 189
RsaNI GTAC 2 cut(s) 6, 188
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 3 cut(s) 93, 132, 231
SchI GAGTC 1 cut(s) 103
SetI ASST 2 cut(s) 17, 208
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 2 cut(s) 76, 214
SseBI AGGCCT 1 cut(s) 212
StuI AGGCCT 1 cut(s) 212
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 21
TatI WGTACW 2 cut(s) 5, 187
TscAI CASTG 1 cut(s) 230
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.