Rorug03G0030800

Hydrophobic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004002
Physical Location & Seq
Forward (+)
2420953 .. 2423183
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0030800.1

Sequence Viewer

Length: 879 bp
ATGGCTGAGGAGCAAAGAGTCCAAATTCCAAGAGTGAAACTTGGAAAAGAAGGATTTGAGGTTTACAAGTTGGGATTTGGGTGTATGGGACTTAGTGGAATCTATAATGTGCCAGTTTCTGAAGAGTTTGGCATATCAATGATCAAGTACGCATTTGACAGAGGAATAACATTCTTCGATACATCAGATGTTTATGGACCACATGCTAATGAAGTTTTGATCAGAAAGGCATTGAAGCAGCTGCCTCGAGATAAGGTTCAGGTGGCTACAAAGTTTGGAATTGTAAAGGCTGAGCCTGAGAAAGTTATAATTAATGGCACTCCTGAGTATGTCCGCTCCTGCTGCGAGGCTAGCCTGAAGCGGCTTGATGTGGACTACATTGATCTTTACTATCAGCACCGGATAGATACATCAGTCCCCATAGAGGATACCATGGAGGAACTACAGAAGCTGGTGAAAGAGGGGAAAATAAAGTACATTAGATTATCTGAAGCTAGCCCAGACACAATAAGGAGGGCACATGCACTTCATCCTATCGCTGCAGTCCAAATGGAGTGGTCTCTTTGGACTCGCGACATTGAGGAACAAATCGTCCCACTTTGCAGGGAACTTGGAATCGGGATAGTGCCATACAGCCCTCTAGGTCAAGGATTTTTTGGTGGCAGGGCAGTTGTGGAAGCTATACCATCAAGTAGTATTGTGGGATGGGTTCCTCGCTTTCAAGGAGACAACTTGGAGAAAAATAAAGACATCTATGCTAGAACACAAAAGTTGGCTGAAAAGCATGGGTGCTCCCCTGCACAACTAGCCCTTGCTTGGGTTCTTAGTCAAGGTGATGGTGTTGTACCTATCCCTGGTGTGTGCCACTCTCCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

292

Amino Acids

32.61

Weight (kDa)

6.34

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 287 6.5e-69 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 1 cut(s) 573
AciI CCGC 2 cut(s) 334, 361
AcsI RAATTY 1 cut(s) 24
AcuI CTGAAG 3 cut(s) 141, 377, 510
AfaI GTAC 3 cut(s) 149, 476, 846
AfiI CCNNNNNNNGG 4 cut(s) 424, 816, 817, 854
AgsI TTSAA 2 cut(s) 235, 722
AjnI CCWGG 1 cut(s) 853
AloI GAACNNNNNNTCC 2 cut(s) 576, 608
AluBI AGCT 4 cut(s) 241, 451, 494, 680
AluI AGCT 4 cut(s) 241, 451, 494, 680
Alw21I GWGCWC 1 cut(s) 794
Alw26I GTCTC 2 cut(s) 564, 720
AlwNI CAGNNNCTG 2 cut(s) 119, 451
Ama87I CYCGRG 1 cut(s) 246
ApeKI GCWGC 4 cut(s) 238, 241, 342, 539
ApoI RAATTY 1 cut(s) 24
AseI ATTAAT 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 466, 845
AsuNHI GCTAGC 2 cut(s) 350, 494
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 520
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
Bbv12I GWGCWC 1 cut(s) 794
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 228, 250, 329, 526
BccI CCATC 3 cut(s) 694, 699, 830
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BciT130I CCWGG 1 cut(s) 855
BciVI GTATCC 1 cut(s) 421
BclI TGATCA 2 cut(s) 141, 219
BcoDI GTCTC 2 cut(s) 564, 720
BfaI CTAG 5 cut(s) 351, 495, 641, 759, 806
BfmI CTRYAG 2 cut(s) 443, 540
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 5 cut(s) 239, 242, 343, 362, 540
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 5 cut(s) 240, 243, 344, 363, 541
Bme1390I CCNGG 1 cut(s) 855
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 711
BmrFI CCNGG 1 cut(s) 855
BmtI GCTAGC 2 cut(s) 354, 498
Bpu10I CCTNAGC 1 cut(s) 6
Bpu1102I GCTNAGC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 432, 853
BsaWI WCCGGW 1 cut(s) 399
Bsc4I CCNNNNNNNGG 4 cut(s) 424, 816, 817, 854
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 855
BseDI CCNNGG 2 cut(s) 432, 853
BseGI GGATG 2 cut(s) 529, 710
BseLI CCNNNNNNNGG 4 cut(s) 424, 816, 817, 854
BseMII CTCAG 3 cut(s) 282, 288, 315
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 520
BseXI GCAGC 4 cut(s) 228, 250, 329, 526
BsgI GTGCAG 1 cut(s) 783
Bsh1236I CGCG 1 cut(s) 573
BsiHKAI GWGCWC 1 cut(s) 794
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 400
BslFI GGGAC 3 cut(s) 102, 401, 578
BslI CCNNNNNNNGG 4 cut(s) 424, 816, 817, 854
BsmAI GTCTC 2 cut(s) 564, 720
BsmFI GGGAC 3 cut(s) 102, 401, 578
Bso31I GGTCTC 1 cut(s) 564
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 2 cut(s) 520, 794
Bsp143I GATC 3 cut(s) 141, 219, 382
Bsp1720I GCTNAGC 1 cut(s) 291
Bsp19I CCATGG 1 cut(s) 432
Bsp68I TCGCGA 1 cut(s) 573
BspACI CCGC 2 cut(s) 334, 361
BspCNI CTCAG 3 cut(s) 283, 289, 316
BspFNI CGCG 1 cut(s) 573
BspLI GGNNCC 1 cut(s) 711
BspMAI CTGCAG 1 cut(s) 544
BspOI GCTAGC 2 cut(s) 354, 498
BspTNI GGTCTC 1 cut(s) 564
BsrBI CCGCTC 1 cut(s) 336
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 432, 853
BssMI GATC 3 cut(s) 141, 219, 382
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 855
Bst6I CTCTTC 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 352, 496
BstDEI CTNAG 6 cut(s) 6, 92, 291, 297, 324, 824
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 529, 710
BstFNI CGCG 1 cut(s) 573
BstKTI GATC 3 cut(s) 144, 222, 385
BstMAI GTCTC 2 cut(s) 564, 720
BstMBI GATC 3 cut(s) 141, 219, 382
BstMWI GCNNNNNNNGC 3 cut(s) 342, 351, 806
BstNI CCWGG 1 cut(s) 855
BstNSI RCATGY 2 cut(s) 206, 524
BstSCI CCNGG 1 cut(s) 853
BstSFI CTRYAG 2 cut(s) 443, 540
BstSLI GKGCMC 1 cut(s) 520
BstUI CGCG 1 cut(s) 573
BstV1I GCAGC 4 cut(s) 228, 250, 329, 526
BsuI GTATCC 1 cut(s) 421
BtgI CCRYGG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 529, 710
BtuMI TCGCGA 1 cut(s) 573
Cac8I GCNNGC 2 cut(s) 352, 496
CaiI CAGNNNCTG 2 cut(s) 119, 451
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 148, 475, 845
CspCI CAANNNNNGTGG 2 cut(s) 536, 571
CviAII CATG 4 cut(s) 203, 433, 521, 785
CviQI GTAC 3 cut(s) 148, 475, 845
DdeI CTNAG 6 cut(s) 6, 92, 291, 297, 324, 824
DpnI GATC 3 cut(s) 143, 221, 384
DpnII GATC 3 cut(s) 141, 219, 382
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 432
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 3 cut(s) 141, 377, 510
Eco88I CYCGRG 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 853
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 4 cut(s) 206, 436, 524, 788
FaqI GGGAC 3 cut(s) 102, 401, 578
FatI CATG 4 cut(s) 202, 432, 520, 784
FbaI TGATCA 2 cut(s) 141, 219
Fnu4HI GCNGC 5 cut(s) 239, 242, 343, 362, 540
FokI GGATG 2 cut(s) 516, 717
Fsp4HI GCNGC 5 cut(s) 239, 242, 343, 362, 540
FspBI CTAG 5 cut(s) 351, 495, 641, 759, 806
GluI GCNGC 5 cut(s) 239, 242, 343, 362, 540
HapII CCGG 1 cut(s) 400
Hin1II CATG 4 cut(s) 206, 436, 524, 788
HinfI GANTC 4 cut(s) 18, 99, 568, 615
HpaII CCGG 1 cut(s) 400
HphI GGTGA 2 cut(s) 466, 845
Hpy166II GTNNAC 2 cut(s) 64, 373
Hpy188I TCNGA 4 cut(s) 121, 187, 224, 490
Hpy188III TCNNGA 4 cut(s) 248, 323, 572, 619
Hpy8I GTNNAC 2 cut(s) 64, 373
HpyAV CCTTC 1 cut(s) 44
HpyCH4V TGCA 4 cut(s) 524, 542, 603, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 342, 351, 806
HpyF3I CTNAG 6 cut(s) 6, 92, 291, 297, 324, 824
Hsp92II CATG 4 cut(s) 206, 436, 524, 788
Ksp22I TGATCA 2 cut(s) 141, 219
Kzo9I GATC 3 cut(s) 141, 219, 382
LmnI GCTCC 3 cut(s) 10, 341, 797
Lsp1109I GCAGC 4 cut(s) 228, 250, 329, 526
MaeI CTAG 5 cut(s) 351, 495, 641, 759, 806
MalI GATC 3 cut(s) 143, 221, 384
MbiI CCGCTC 1 cut(s) 336
MboI GATC 3 cut(s) 141, 219, 382
MboII GAAGA 2 cut(s) 134, 166
MhlI GDGCHC 2 cut(s) 520, 794
MluCI AATT 3 cut(s) 24, 279, 309
MlyI GAGTC 2 cut(s) 27, 562
MseI TTAA 2 cut(s) 312, 877
MslI CAYNNNNRTG 2 cut(s) 137, 207
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 1 cut(s) 400
MspR9I CCNGG 1 cut(s) 855
MvaI CCWGG 1 cut(s) 855
MvnI CGCG 1 cut(s) 573
MwoI GCNNNNNNNGC 3 cut(s) 342, 351, 806
NcoI CCATGG 1 cut(s) 432
NdeII GATC 3 cut(s) 141, 219, 382
NheI GCTAGC 2 cut(s) 350, 494
NlaIII CATG 4 cut(s) 206, 436, 524, 788
NlaIV GGNNCC 1 cut(s) 711
NruI TCGCGA 1 cut(s) 573
NspI RCATGY 2 cut(s) 206, 524
PaeR7I CTCGAG 1 cut(s) 246
PfeI GAWTC 2 cut(s) 99, 615
PkrI GCNGC 5 cut(s) 240, 243, 344, 363, 541
PleI GAGTC 2 cut(s) 26, 562
PpsI GAGTC 2 cut(s) 26, 562
PshBI ATTAAT 1 cut(s) 312
PsiI TTATAA 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 853
PspGI CCWGG 1 cut(s) 853
PspN4I GGNNCC 1 cut(s) 711
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 544
PstNI CAGNNNCTG 2 cut(s) 119, 451
PvuII CAGCTG 1 cut(s) 241
RruI TCGCGA 1 cut(s) 573
RsaI GTAC 3 cut(s) 149, 476, 846
RsaNI GTAC 3 cut(s) 148, 475, 845
RseI CAYNNNNRTG 2 cut(s) 137, 207
SaqAI TTAA 2 cut(s) 312, 877
SatI GCNGC 5 cut(s) 239, 242, 343, 362, 540
Sau3AI GATC 3 cut(s) 141, 219, 382
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 2 cut(s) 27, 562
ScrFI CCNGG 1 cut(s) 855
SduI GDGCHC 2 cut(s) 520, 794
SfcI CTRYAG 2 cut(s) 443, 540
Sfr274I CTCGAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 246
SmiMI CAYNNNNRTG 2 cut(s) 137, 207
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 3 cut(s) 24, 279, 309
SsiI CCGC 2 cut(s) 334, 361
SspMI CTAG 5 cut(s) 351, 495, 641, 759, 806
StyD4I CCNGG 1 cut(s) 853
StyI CCWWGG 1 cut(s) 432
TaqI TCGA 2 cut(s) 177, 247
TasI AATT 3 cut(s) 24, 279, 309
TatI WGTACW 1 cut(s) 474
TauI GCSGC 1 cut(s) 364
TfiI GAWTC 2 cut(s) 99, 615
Tru1I TTAA 2 cut(s) 312, 877
Tru9I TTAA 2 cut(s) 312, 877
TseI GCWGC 4 cut(s) 238, 241, 342, 539
TspDTI ATGAA 2 cut(s) 225, 518
VpaK11BI GGWCC 1 cut(s) 197
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 1 cut(s) 24
XceI RCATGY 2 cut(s) 206, 524
XhoI CTCGAG 1 cut(s) 246
XspI CTAG 5 cut(s) 351, 495, 641, 759, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.