Prupe.6G241100_v2.0.a1

hydrophobic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0004002
Physical Location & Seq
Forward (+)
23983601 .. 23983988
388 bp
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UTR
Exon/CDS
Intron
Prupe.6G241100.1

Sequence Viewer

Length: 207 bp
ATCTTGTTGGCTATAATTCTTCCACCACTGGGTGTTTTGCTTCGCTATGGCTGTAAGGTGCAATTTTGGTTCCCGTTGTTGCTGACGCTGCTGGGTTATATACCACGAATTATATTTGCAATTTATGTCTTTAGTGAAAAAAAAAAATTAACTAACAAGCTAGGAGCTAGGTTTCCGTTGGATCAAATGGATCAAGCTAGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

69

Amino Acids

7.84

Weight (kDa)

9.73

Isoelectric Point (pI)

22.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 189, 198
AdeI CACNNNGTG 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 29
AluBI AGCT 4 cut(s) 160, 167, 197, 201
AluI AGCT 4 cut(s) 160, 167, 197, 201
AlwI GGATC 2 cut(s) 189, 198
ApeKI GCWGC 1 cut(s) 88
AsuNHI GCTAGC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 75
BfaI CTAG 3 cut(s) 161, 168, 198
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 38
BmtI GCTAGC 1 cut(s) 201
BmuI ACTGGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 29
Bsp143I GATC 2 cut(s) 181, 190
BspLI GGNNCC 1 cut(s) 71
BspOI GCTAGC 1 cut(s) 201
BspPI GGATC 2 cut(s) 189, 198
BsrI ACTGG 1 cut(s) 33
BssMI GATC 2 cut(s) 181, 190
BstC8I GCNNGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 184, 193
BstMBI GATC 2 cut(s) 181, 190
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 199
CseI GACGC 1 cut(s) 94
CviJI RGCY 6 cut(s) 11, 51, 160, 167, 197, 201
CviKI_1 RGCY 6 cut(s) 11, 51, 160, 167, 197, 201
DpnI GATC 2 cut(s) 183, 192
DpnII GATC 2 cut(s) 181, 190
DraIII CACNNNGTG 1 cut(s) 32
FaiI YATR 6 cut(s) 14, 48, 99, 101, 113, 126
Fnu4HI GCNGC 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 3 cut(s) 161, 168, 198
GluI GCNGC 1 cut(s) 89
GsaI CCCAGC 1 cut(s) 95
HgaI GACGC 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 61, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 181, 190
LmnI GCTCC 1 cut(s) 164
LpnPI CCDG 2 cut(s) 14, 77
Lsp1109I GCAGC 1 cut(s) 75
MaeI CTAG 3 cut(s) 161, 168, 198
MalI GATC 2 cut(s) 183, 192
MboI GATC 2 cut(s) 181, 190
MboII GAAGA 1 cut(s) 11
MluCI AATT 5 cut(s) 15, 62, 108, 120, 146
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 2 cut(s) 181, 190
NheI GCTAGC 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 71
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 2 cut(s) 181, 190
SetI ASST 6 cut(s) 60, 162, 169, 173, 199, 203
SgeI CNNG 8 cut(s) 16, 41, 85, 104, 117, 169, 173, 180
Sse9I AATT 5 cut(s) 15, 62, 108, 120, 146
SspMI CTAG 3 cut(s) 161, 168, 198
TasI AATT 5 cut(s) 15, 62, 108, 120, 146
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TscAI CASTG 1 cut(s) 33
TseI GCWGC 1 cut(s) 88
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 1 cut(s) 33
XspI CTAG 3 cut(s) 161, 168, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.