Rorug03G0030500

Hydrophobic protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
2405496 .. 2409853
4358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0030500.1

Sequence Viewer

Length: 975 bp
ATGTCCGACGGAGCTTTAACGGTCCTCGACGGCACTCACCTGAGAGCCGTCGACCTCTCTCTCCCCGACTCTGACGTCATCCTGACCGGAGGTCACGTGCTGGACCTCGCCGACTCCAAAGCCTCTTCGTCTCTCTTCGGCCTGTCCTTGCCTCAGGGACTCAAGTCCTCTGCTTTGAAACGCGTCAATGTCCAAGACGACGACGTTTTCCGTCAAGCCGAGCTCGATCGCCACCAGGCTCTGAAGCTCGCCGGCGACTACATCGCCGCGATCGCCGATGAGTTGAAAGATGATCCGCTTGTCATATCTATCTTGGATGGAAACACGATTCGGCTGTTTTTGGAGGATGAGGATGACTTTGCAATGCTAGCGGAGAATCTGTTCACTGATCTTGATGCAGAAGATGTAGGAAAGATCAACAAGAGCGCGATCCGGAGTGCGCTGGTTCAGATGGGAGTTGAGATGGGTGTCCCTCCCGCTTCAGAATTTCCTCCACTAAGTGATATCTTGACGAAACATGAAGCTAATGGGGAAGAAGAACTAGGCCAAGCACAATTTGCTGAATTACTCCAGCCTATCCTACAAGAACTTGCAGAGGCCCTGGCAAAAAAGAATGTTGTTCTTATACAGAACATCAAGATTGTGAATGGTTCTAAGCTGAGAAAGCTTTTAGCCGATGAGAAGCAATTGAACAATGTCGTAGAGAAGATATTGCAAGGGAAGAAGGATGACTTGGGGAGTGCAGAAGTAATCAGGAGTTATCTTGAGAAAAATGGGCTAGAGTTGGGGTTGCCACCATCTGAAGGTGACGAGGCAGTGGCTATTTTATATGATCTAGTGTTTGCTGAGCTTAAGGAAGACAAGAGTGCTCTGAAAGAAGGCGAAGATAAATTTGAAAATGTTGTGAAGAAGATCCTTGAGAAACTTGCGGAGCAGCTAGAAGCTAATCCTGTATTTCATGATACTGAGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

324

Amino Acids

35.34

Weight (kDa)

4.49

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AatII GACGTC 1 cut(s) 78
AccI GTMKAC 1 cut(s) 51
AccII CGCG 3 cut(s) 183, 269, 428
AccIII TCCGGA 1 cut(s) 432
AciI CCGC 5 cut(s) 267, 296, 371, 477, 929
AclWI GGATC 3 cut(s) 287, 424, 907
AcsI RAATTY 2 cut(s) 485, 890
AcuI CTGAAG 3 cut(s) 263, 465, 822
AcvI CACGTG 1 cut(s) 97
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 500
AfiI CCNNNNNNNGG 1 cut(s) 803
AflII CTTAAG 1 cut(s) 851
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 4 cut(s) 178, 286, 691, 896
AhdI GACNNNNNGTC 1 cut(s) 90
AjnI CCWGG 2 cut(s) 234, 600
AjuI GAANNNNNNNTTGG 2 cut(s) 716, 748
AloI GAACNNNNNNTCC 2 cut(s) 365, 397
AluBI AGCT 9 cut(s) 14, 223, 247, 524, 658, 667, 850, 937, 944
AluI AGCT 9 cut(s) 14, 223, 247, 524, 658, 667, 850, 937, 944
Alw21I GWGCWC 3 cut(s) 225, 871, 972
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 3 cut(s) 287, 424, 907
AlwNI CAGNNNCTG 1 cut(s) 241
Aor13HI TCCGGA 1 cut(s) 432
AoxI GGCC 3 cut(s) 139, 544, 597
ApeKI GCWGC 1 cut(s) 934
ApoI RAATTY 2 cut(s) 485, 890
AsiSI GCGATCGC 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 428, 442
AspS9I GGNCC 3 cut(s) 22, 103, 598
AsuHPI GGTGA 2 cut(s) 29, 818
AsuNHI GCTAGC 1 cut(s) 367
AvaII GGWCC 2 cut(s) 22, 103
AxyI CCTNAGG 1 cut(s) 153
BanII GRGCYC 1 cut(s) 225
BbrPI CACGTG 1 cut(s) 97
BbsI GAAGAC 1 cut(s) 864
Bbv12I GWGCWC 3 cut(s) 225, 871, 972
BbvI GCAGC 1 cut(s) 946
BccI CCATC 4 cut(s) 311, 445, 457, 805
BceAI ACGGC 2 cut(s) 32, 46
BciT130I CCWGG 2 cut(s) 236, 602
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 5 cut(s) 368, 542, 779, 836, 938
BfrI CTTAAG 1 cut(s) 851
BisI GCNGC 2 cut(s) 267, 935
BlpI GCTNAGC 1 cut(s) 846
BlsI GCNGC 2 cut(s) 268, 936
Bme1390I CCNGG 2 cut(s) 236, 602
Bme18I GGWCC 2 cut(s) 22, 103
BmeRI GACNNNNNGTC 1 cut(s) 90
BmgT120I GGNCC 3 cut(s) 22, 103, 598
BmrFI CCNGG 2 cut(s) 236, 602
BmsI GCATC 1 cut(s) 385
BmtI GCTAGC 1 cut(s) 371
BoxI GACNNNNGTC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 864
BpmI CTGGAG 1 cut(s) 554
Bpu1102I GCTNAGC 1 cut(s) 846
BpuEI CTTGAG 3 cut(s) 146, 785, 938
BsaAI YACGTR 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 600
BsaWI WCCGGW 2 cut(s) 86, 432
BsaXI ACNNNNNCTCC 4 cut(s) 81, 111, 365, 395
Bsc4I CCNNNNNNNGG 1 cut(s) 803
Bse118I RCCGGY 1 cut(s) 251
Bse21I CCTNAGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 369
BseAI TCCGGA 1 cut(s) 432
BseBI CCWGG 2 cut(s) 236, 602
BseDI CCNNGG 1 cut(s) 600
BseGI GGATG 5 cut(s) 78, 322, 352, 358, 733
BseLI CCNNNNNNNGG 1 cut(s) 803
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 5 cut(s) 32, 167, 650, 837, 957
BseXI GCAGC 1 cut(s) 946
BsgI GTGCAG 1 cut(s) 762
Bsh1236I CGCG 3 cut(s) 183, 269, 428
Bsh1285I CGRYCG 2 cut(s) 229, 273
BshFI GGCC 3 cut(s) 141, 546, 599
BsiEI CGRYCG 2 cut(s) 229, 273
BsiHKAI GWGCWC 3 cut(s) 225, 871, 972
BsiSI CCGG 3 cut(s) 87, 252, 433
BslFI GGGAC 2 cut(s) 171, 455
BslI CCNNNNNNNGG 1 cut(s) 803
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 171, 455
BsnI GGCC 3 cut(s) 141, 546, 599
Bsp1286I GDGCHC 3 cut(s) 225, 871, 972
Bsp13I TCCGGA 1 cut(s) 432
Bsp143I GATC 8 cut(s) 226, 270, 292, 388, 414, 429, 832, 912
Bsp1720I GCTNAGC 1 cut(s) 846
BspACI CCGC 5 cut(s) 267, 296, 371, 477, 929
BspANI GGCC 3 cut(s) 141, 546, 599
BspCNI CTCAG 5 cut(s) 33, 166, 651, 838, 958
BspEI TCCGGA 1 cut(s) 432
BspFNI CGCG 3 cut(s) 183, 269, 428
BspHI TCATGA 1 cut(s) 958
BspOI GCTAGC 1 cut(s) 371
BspPI GGATC 3 cut(s) 287, 424, 907
BspTI CTTAAG 1 cut(s) 851
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 600
BssMI GATC 8 cut(s) 226, 270, 292, 388, 414, 429, 832, 912
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 236, 602
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 2 cut(s) 130, 140
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 851
BstAPI GCANNNNNTGC 1 cut(s) 557
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 3 cut(s) 249, 253, 369
BstDEI CTNAG 7 cut(s) 41, 153, 497, 654, 659, 846, 966
BstF5I GGATG 5 cut(s) 78, 322, 352, 358, 733
BstFNI CGCG 3 cut(s) 183, 269, 428
BstHHI GCGC 2 cut(s) 428, 442
BstKTI GATC 8 cut(s) 229, 273, 295, 391, 417, 432, 835, 915
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 8 cut(s) 226, 270, 292, 388, 414, 429, 832, 912
BstMCI CGRYCG 2 cut(s) 229, 273
BstMWI GCNNNNNNNGC 4 cut(s) 272, 368, 557, 664
BstNI CCWGG 2 cut(s) 236, 602
BstPAI GACNNNNGTC 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 234, 600
BstUI CGCG 3 cut(s) 183, 269, 428
BstV1I GCAGC 1 cut(s) 946
BstV2I GAAGAC 1 cut(s) 864
BstX2I RGATCY 1 cut(s) 912
BstYI RGATCY 1 cut(s) 912
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 3 cut(s) 141, 546, 599
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 5 cut(s) 78, 322, 352, 358, 733
BtsI GCAGTG 1 cut(s) 822
BtsIMutI CAGTG 3 cut(s) 384, 822, 970
Cac8I GCNNGC 3 cut(s) 249, 253, 369
CaiI CAGNNNCTG 1 cut(s) 241
CciI TCATGA 1 cut(s) 958
CfoI GCGC 2 cut(s) 428, 442
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 3 cut(s) 22, 103, 598
CseI GACGC 1 cut(s) 172
CviAII CATG 2 cut(s) 518, 959
DdeI CTNAG 7 cut(s) 41, 153, 497, 654, 659, 846, 966
DpnI GATC 8 cut(s) 228, 272, 294, 390, 416, 431, 834, 914
DpnII GATC 8 cut(s) 226, 270, 292, 388, 414, 429, 832, 912
DraIII CACNNNGTG 1 cut(s) 500
DrdI GACNNNNNNGTC 1 cut(s) 74
DriI GACNNNNNGTC 1 cut(s) 90
DseDI GACNNNNNNGTC 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 130, 140
Eam1105I GACNNNNNGTC 1 cut(s) 90
EarI CTCTTC 2 cut(s) 130, 140
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 22, 103
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 3 cut(s) 263, 465, 822
Eco72I CACGTG 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 2 cut(s) 234, 600
EcoRV GATATC 1 cut(s) 505
EcoT38I GRGCYC 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 2 cut(s) 521, 962
FaiI YATR 6 cut(s) 305, 519, 626, 829, 831, 960
FalI AAGNNNNNCTT 2 cut(s) 716, 748
FaqI GGGAC 2 cut(s) 171, 455
FatI CATG 2 cut(s) 517, 958
FauI CCCGC 1 cut(s) 484
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 267, 935
FokI GGATG 5 cut(s) 65, 329, 359, 365, 740
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 267, 935
FspBI CTAG 5 cut(s) 368, 542, 779, 836, 938
GlaI GCGC 2 cut(s) 427, 441
GluI GCNGC 2 cut(s) 267, 935
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 3 cut(s) 141, 546, 599
HapII CCGG 3 cut(s) 87, 252, 433
HgaI GACGC 1 cut(s) 172
HhaI GCGC 2 cut(s) 428, 442
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 2 cut(s) 521, 962
Hin6I GCGC 2 cut(s) 426, 440
HinP1I GCGC 2 cut(s) 426, 440
HincII GTYRAC 1 cut(s) 52
HindII GTYRAC 1 cut(s) 52
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 5 cut(s) 68, 113, 159, 328, 376
HpaII CCGG 3 cut(s) 87, 252, 433
HphI GGTGA 2 cut(s) 29, 818
Hpy166II GTNNAC 2 cut(s) 52, 384
Hpy188I TCNGA 7 cut(s) 7, 73, 243, 450, 484, 802, 873
Hpy188III TCNNGA 8 cut(s) 82, 392, 433, 508, 637, 754, 764, 959
Hpy8I GTNNAC 2 cut(s) 52, 384
Hpy99I CGWCG 5 cut(s) 11, 32, 53, 203, 206
HpyAV CCTTC 3 cut(s) 718, 797, 872
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 3 cut(s) 75, 96, 204
HpyCH4V TGCA 5 cut(s) 362, 398, 593, 715, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 368, 557, 664
HpyF3I CTNAG 7 cut(s) 41, 153, 497, 654, 659, 846, 966
HpySE526I ACGT 3 cut(s) 75, 96, 204
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 521, 962
HspAI GCGC 2 cut(s) 426, 440
Kpn2I TCCGGA 1 cut(s) 432
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 8 cut(s) 226, 270, 292, 388, 414, 429, 832, 912
LmnI GCTCC 2 cut(s) 11, 931
Lsp1109I GCAGC 1 cut(s) 946
LweI GCATC 1 cut(s) 385
MaeI CTAG 5 cut(s) 368, 542, 779, 836, 938
MaeII ACGT 3 cut(s) 75, 96, 204
MaeIII GTNAC 2 cut(s) 92, 806
MalI GATC 8 cut(s) 228, 272, 294, 390, 416, 431, 834, 914
MboI GATC 8 cut(s) 226, 270, 292, 388, 414, 429, 832, 912
MfeI CAATTG 1 cut(s) 686
MflI RGATCY 1 cut(s) 912
MhlI GDGCHC 3 cut(s) 225, 871, 972
MluCI AATT 5 cut(s) 485, 554, 563, 686, 890
MluI ACGCGT 1 cut(s) 181
MlyI GAGTC 3 cut(s) 62, 107, 153
MmeI TCCRAC 1 cut(s) 30
MreI CGCCGGCG 1 cut(s) 251
MroI TCCGGA 1 cut(s) 432
MroNI GCCGGC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 2 cut(s) 17, 852
MspCI CTTAAG 1 cut(s) 851
MspI CCGG 3 cut(s) 87, 252, 433
MspR9I CCNGG 2 cut(s) 236, 602
MunI CAATTG 1 cut(s) 686
MvaI CCWGG 2 cut(s) 236, 602
MvnI CGCG 3 cut(s) 183, 269, 428
MwoI GCNNNNNNNGC 4 cut(s) 272, 368, 557, 664
NaeI GCCGGC 1 cut(s) 253
NdeII GATC 8 cut(s) 226, 270, 292, 388, 414, 429, 832, 912
NgoMIV GCCGGC 1 cut(s) 251
NheI GCTAGC 1 cut(s) 367
NlaIII CATG 2 cut(s) 521, 962
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 2 cut(s) 92, 806
PagI TCATGA 1 cut(s) 958
PdiI GCCGGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 2 cut(s) 328, 376
PkrI GCNGC 2 cut(s) 268, 936
Ple19I CGATCG 2 cut(s) 229, 273
PleI GAGTC 3 cut(s) 62, 107, 153
PmaCI CACGTG 1 cut(s) 97
PmlI CACGTG 1 cut(s) 97
PpsI GAGTC 3 cut(s) 62, 107, 153
Ppu21I YACGTR 1 cut(s) 97
PshAI GACNNNNGTC 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 234, 600
PspCI CACGTG 1 cut(s) 97
PspGI CCWGG 2 cut(s) 234, 600
PspPI GGNCC 3 cut(s) 22, 103, 598
PstNI CAGNNNCTG 1 cut(s) 241
PsuI RGATCY 1 cut(s) 912
PvuI CGATCG 2 cut(s) 229, 273
RgaI GCGATCGC 1 cut(s) 273
SacI GAGCTC 1 cut(s) 225
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 17, 852
SatI GCNGC 2 cut(s) 267, 935
Sau3AI GATC 8 cut(s) 226, 270, 292, 388, 414, 429, 832, 912
Sau96I GGNCC 3 cut(s) 22, 103, 598
SchI GAGTC 3 cut(s) 62, 107, 153
ScrFI CCNGG 2 cut(s) 236, 602
SduI GDGCHC 3 cut(s) 225, 871, 972
SfaAI GCGATCGC 1 cut(s) 273
SfaNI GCATC 1 cut(s) 385
SgfI GCGATCGC 1 cut(s) 273
SgrAI CRCCGGYG 1 cut(s) 251
SinI GGWCC 2 cut(s) 22, 103
SmlI CTYRAG 4 cut(s) 161, 764, 851, 917
SmoI CTYRAG 4 cut(s) 161, 764, 851, 917
Sse9I AATT 5 cut(s) 485, 554, 563, 686, 890
SsiI CCGC 5 cut(s) 267, 296, 371, 477, 929
SspMI CTAG 5 cut(s) 368, 542, 779, 836, 938
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 234, 600
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 3 cut(s) 78, 99, 207
TaqI TCGA 3 cut(s) 27, 51, 225
TasI AATT 5 cut(s) 485, 554, 563, 686, 890
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 2 cut(s) 328, 376
Tru1I TTAA 2 cut(s) 17, 852
Tru9I TTAA 2 cut(s) 17, 852
TscAI CASTG 2 cut(s) 391, 822
TseFI GTSAC 2 cut(s) 92, 806
TseI GCWGC 1 cut(s) 934
Tsp45I GTSAC 2 cut(s) 92, 806
TspDTI ATGAA 2 cut(s) 534, 947
TspGWI ACGGA 2 cut(s) 24, 200
TspRI CASTG 2 cut(s) 391, 822
Vha464I CTTAAG 1 cut(s) 851
VpaK11BI GGWCC 2 cut(s) 22, 103
XapI RAATTY 2 cut(s) 485, 890
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 5 cut(s) 368, 542, 779, 836, 938
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.