Rroxscaffold_6G00420890

Hydrophobic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004002
Physical Location & Seq
Forward (+)
42109995 .. 42115334
5340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420890.1

Sequence Viewer

Length: 174 bp
ATGCCGAGCGAAGGAACAGCAAACTTCATCGATATCCTCATCGCCATCCTCTTGCCTCCTCTTGGGGTCTTCCTCAAGTTTGGCTGCAAAGTGGAGTTCTGGATCTGTTTGATACTGACTCTTTTTGGTTACCTTCCTGGGATCATCTATGCTATCTGGGCCATTACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

57

Amino Acids

6.36

Weight (kDa)

5.93

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 9 - 55 3.9e-21 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 110, 149
AfiI CCNNNNNNNGG 2 cut(s) 11, 62
AjnI CCWGG 1 cut(s) 136
AlwI GGATC 2 cut(s) 110, 149
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 138
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 137
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 62
BseBI CCWGG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 11, 62
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 11, 62
BsnI GGCC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 102, 141
BspANI GGCC 1 cut(s) 161
BspDI ATCGAT 1 cut(s) 30
BspPI GGATC 2 cut(s) 110, 149
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 2 cut(s) 102, 141
Bst2UI CCWGG 1 cut(s) 138
BstEII GGTNACC 1 cut(s) 128
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 2 cut(s) 105, 144
BstMBI GATC 2 cut(s) 102, 141
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 138
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
Bsu15I ATCGAT 1 cut(s) 30
BsuRI GGCC 1 cut(s) 161
BsuTUI ATCGAT 1 cut(s) 30
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 159
ClaI ATCGAT 1 cut(s) 30
CviJI RGCY 2 cut(s) 84, 161
CviKI_1 RGCY 2 cut(s) 84, 161
DpnI GATC 2 cut(s) 104, 143
DpnII GATC 2 cut(s) 102, 141
Eco32I GATATC 1 cut(s) 34
Eco91I GGTNACC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 136
EcoRV GATATC 1 cut(s) 34
FaiI YATR 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 1 cut(s) 161
HinfI GANTC 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 5, 143
HpyCH4V TGCA 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 102, 141
LpnPI CCDG 4 cut(s) 85, 123, 142, 150
Lsp1109I GCAGC 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 128
MalI GATC 2 cut(s) 104, 143
MboI GATC 2 cut(s) 102, 141
MboII GAAGA 1 cut(s) 61
MflI RGATCY 1 cut(s) 102
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 5 cut(s) 47, 59, 66, 69, 83
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 2 cut(s) 102, 141
NmeAIII GCCGAG 1 cut(s) 30
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 136
PspEI GGTNACC 1 cut(s) 128
PspGI CCWGG 1 cut(s) 136
PspPI GGNCC 1 cut(s) 159
PsuI RGATCY 1 cut(s) 102
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 102, 141
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 138
SetI ASST 1 cut(s) 135
SgeI CNNG 8 cut(s) 18, 64, 74, 88, 112, 149, 150, 169
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 136
TaqI TCGA 1 cut(s) 30
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.