Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004002

Physical Location & Seq

Genomic Coordinates Reverse (-)

1755497 .. 1756924

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGAGTACAGCTACTTTCGTTGATATTATTATCGCCATCCTCTTGCCTCCACTCGGTGTCTTTCTCAGATTTGGTTGCGGGGTTGAGTTTTGGATATGTTTGGTTTTGACGCTACTTGGGTATATTCCTGGGATCATATACGCCATTTATGTCCTCACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0016021 GO:0031224 GO:0033993 GO:0042221 GO:0042538 GO:0044425 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pmp3

Protein Analysis

54

Amino Acids

5.96

Weight (kDa)

5.82

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pmp3	PF01679	6 - 52	5.9e-22	Proteolipid membrane potential modulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57550 AT3G05880 AT3G05890
fragaria_vesca	FvH4_6g15380
malus_domestica	MD04G1104200.v1.1 MD04G1185600.v1.1 MD04G1185700.v1.1 MD04G1185900.v1.1 MD12G1124100.v1.1 MD12G1199100.v1.1 MD12G1199200.v1.1 MD12G1199300.v1.1
prunus_persica	Prupe.6G241100_v2.0.a1 Prupe.6G303600_v2.0.a1 Prupe.6G303700_v2.0.a1
pyrus_communis	pycom12g18540 pycom12g18550 pycom12g18570
rosa_chinensis	RchiOBHm_Chr3g0458631 RchiOBHm_Chr3g0458641 RchiOBHm_Chr3g0468861
rosa_multiflora	Rmu_sc0001639.1_g000017
rosa_roxburghii	Rroxscaffold_6G00412510 Rroxscaffold_6G00420890
rosa_rugosa	Rorug03G0030500 Rorug03G0030600.1 Rorug03G0030700.1 Rorug03G0030800
rosa_samantha	Rh3DG092600 Rh7DG019500
rosa_wichuraiana	Rw3G007570 Rw3G007580 Rw3G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	140
AdeI	CACNNNGTG	1 cut(s)	56
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
AlwI	GGATC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	148
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	132
BspACI	CCGC	1 cut(s)	78
BspCNI	CTCAG	1 cut(s)	78
BspPI	GGATC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	36
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	36
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	6
CviJI	RGCY	1 cut(s)	11
CviKI_1	RGCY	1 cut(s)	11
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DraIII	CACNNNGTG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	127
FaiI	YATR	5 cut(s)	97, 123, 137, 139, 150
FauI	CCCGC	1 cut(s)	71
FokI	GGATG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	132
LpnPI	CCDG	2 cut(s)	114, 141
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MnlI	CCTC	3 cut(s)	50, 57, 164
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	1 cut(s)	13
SgeI	CNNG	6 cut(s)	55, 65, 91, 128, 140, 141
SsiI	CCGC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	127
TatI	WGTACW	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.