pycom12g18570

Hydrophobic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0004002
Physical Location & Seq
Forward (+)
20713875 .. 20714920
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g18570.3

Sequence Viewer

Length: 270 bp
ATGCCGAGCGAAGGAACATTAAACTGCGTCGACATCCTCCTCGCCATCCTCTTGCCTCCTCTTGGCGTCTTCCTTAAGTTTGGCTGCCATGTTAGTGGAATTCTGGATCTGTTTGTTGCTGACCTTATTTGGTTACATCCCTGGGATTATTTATGCCATTTATGCCATCACCAAGTGATGTCCAATTTCTGTATTAGAGATGCGAAGGACACATATGTCATTTTGTGTTTGCGGTATTGGAATGTTTTCAGCCGTCTGATTATCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

90

Amino Acids

10.36

Weight (kDa)

6.14

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
AccI GTMKAC 1 cut(s) 30
AciI CCGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 175
AfiI CCNNNNNNNGG 2 cut(s) 11, 62
AflII CTTAAG 1 cut(s) 74
AjnI CCWGG 1 cut(s) 140
AlwI GGATC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 1 cut(s) 71
BccI CCATC 2 cut(s) 53, 174
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 1 cut(s) 142
BfrI CTTAAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 140, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 62
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 140, 141
BseGI GGATG 3 cut(s) 33, 45, 136
BseLI CCNNNNNNNGG 2 cut(s) 11, 62
BseRI GAGGAG 2 cut(s) 29, 48
BseXI GCAGC 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 11, 62
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 114
BspTI CTTAAG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 140, 141
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 66
BstAFI CTTAAG 1 cut(s) 74
BstF5I GGATG 3 cut(s) 33, 45, 136
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 106
BtsCI GGATG 3 cut(s) 33, 45, 136
CseI GACGC 2 cut(s) 16, 55
CviAII CATG 1 cut(s) 89
CviJI RGCY 2 cut(s) 84, 252
CviKI_1 RGCY 2 cut(s) 84, 252
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DraIII CACNNNGTG 1 cut(s) 175
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 140
FaeI CATG 1 cut(s) 92
FaiI YATR 5 cut(s) 90, 154, 163, 214, 216
FatI CATG 1 cut(s) 88
FauNDI CATATG 1 cut(s) 214
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 3 cut(s) 20, 32, 123
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HgaI GACGC 2 cut(s) 16, 55
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 92
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 5, 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 92
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 89, 127, 154, 250
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 190
MaeIII GTNAC 1 cut(s) 132
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 61
MflI RGATCY 1 cut(s) 106
MluCI AATT 2 cut(s) 99, 184
MnlI CCTC 5 cut(s) 47, 50, 59, 66, 69
MroXI GAANNNNTTC 1 cut(s) 245
MseI TTAA 2 cut(s) 20, 75
MslI CAYNNNNRTG 1 cut(s) 93
MspCI CTTAAG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 162
NdeI CATATG 1 cut(s) 214
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 92
NmeAIII GCCGAG 1 cut(s) 30
PasI CCCWGGG 1 cut(s) 141
PdmI GAANNNNTTC 1 cut(s) 245
PkrI GCNGC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PsuI RGATCY 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 93
SalI GTCGAC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 20, 75
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 142
SetI ASST 1 cut(s) 126
SfaNI GCATC 1 cut(s) 190
SgeI CNNG 9 cut(s) 18, 53, 64, 74, 101, 116, 153, 154, 185
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 2 cut(s) 99, 184
SsiI CCGC 1 cut(s) 232
StyD4I CCNGG 1 cut(s) 140
TaqI TCGA 1 cut(s) 30
TasI AATT 2 cut(s) 99, 184
Tru1I TTAA 2 cut(s) 20, 75
Tru9I TTAA 2 cut(s) 20, 75
TseI GCWGC 1 cut(s) 84
Vha464I CTTAAG 1 cut(s) 74
XapI RAATTY 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.