Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001639.1

Orthogroup ID

OG0004002

Physical Location & Seq

Genomic Coordinates Forward (+)

71001 .. 72455

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001639.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgggcgcatgcgcgacgtgctgtgaaatcctcctcgccatattgcttccaccactcggcgtcgtcatccgctatggctgtgggtgcttcggcagtggatggcaattttgcgtccggctccccagtggcgattttgtggtgcctggttgcaatgggtggtgcctgatggttggggactctgcctatgggttgctcgatccggtgggtagcggcgtgggtcataatgggtgcccagacgcacgggtgtccagagatgggttgatgctagggtgcccaaatcagattcaaacgggcctggtgagtgaattacttctcctaggtgatcatattactggttacagttatggctacggttacggttattataatatttacactgctctcgtgacatatgcagtgcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pmp3

Protein Analysis

134

Amino Acids

14.1

Weight (kDa)

4.64

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57550 AT3G05880 AT3G05890
fragaria_vesca	FvH4_6g15380
malus_domestica	MD04G1104200.v1.1 MD04G1185600.v1.1 MD04G1185700.v1.1 MD04G1185900.v1.1 MD12G1124100.v1.1 MD12G1199100.v1.1 MD12G1199200.v1.1 MD12G1199300.v1.1
prunus_persica	Prupe.6G241100_v2.0.a1 Prupe.6G303600_v2.0.a1 Prupe.6G303700_v2.0.a1
pyrus_communis	pycom12g18540 pycom12g18550 pycom12g18570
rosa_chinensis	RchiOBHm_Chr3g0458631 RchiOBHm_Chr3g0458641 RchiOBHm_Chr3g0468861
rosa_multiflora	Rmu_sc0001639.1_g000017
rosa_roxburghii	Rroxscaffold_6G00412510 Rroxscaffold_6G00420890
rosa_rugosa	Rorug03G0030500 Rorug03G0030600.1 Rorug03G0030700.1 Rorug03G0030800
rosa_samantha	Rh3DG092600 Rh7DG019500
rosa_wichuraiana	Rw3G007570 Rw3G007580 Rw3G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AccB1I	GGYRCC	4 cut(s)	139, 159, 228, 270
AccII	CGCG	1 cut(s)	14
AciI	CCGC	2 cut(s)	70, 210
AclWI	GGATC	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	56, 255
AgsI	TTSAA	1 cut(s)	287
AjiI	CACGTC	1 cut(s)	18
AjnI	CCWGG	2 cut(s)	142, 294
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	309
AspA2I	CCTAGG	1 cut(s)	316
AspLEI	GCGC	2 cut(s)	8, 14
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	310, 332
AvrII	CCTAGG	1 cut(s)	316
BaeGI	GKGCMC	2 cut(s)	233, 275
BanI	GGYRCC	4 cut(s)	139, 159, 228, 270
BauI	CACGAG	1 cut(s)	383
BccI	CCATC	3 cut(s)	93, 160, 248
BciT130I	CCWGG	2 cut(s)	144, 296
BclI	TGATCA	1 cut(s)	322
BfaI	CTAG	2 cut(s)	266, 317
BisI	GCNGC	1 cut(s)	211
BlnI	CCTAGG	1 cut(s)	316
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	2 cut(s)	144, 296
BmgBI	CACGTC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	5 cut(s)	119, 141, 161, 230, 272
BmrFI	CCNGG	2 cut(s)	144, 296
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 255
Bse1I	ACTGG	2 cut(s)	123, 337
Bse3DI	GCAATG	1 cut(s)	157
BseBI	CCWGG	2 cut(s)	144, 296
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	66, 104
BseLI	CCNNNNNNNGG	2 cut(s)	56, 255
BseMI	GCAATG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	123, 337
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	2 cut(s)	233, 275
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	4 cut(s)	139, 159, 228, 270
BsiSI	CCGG	2 cut(s)	115, 200
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	56, 255
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	233, 275
Bsp143I	GATC	2 cut(s)	196, 322
BspACI	CCGC	2 cut(s)	70, 210
BspANI	GGCC	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	5 cut(s)	119, 141, 161, 230, 272
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	4 cut(s)	139, 159, 228, 270
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	123, 337
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	196, 322
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	383
BssT1I	CCWWGG	1 cut(s)	316
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	2 cut(s)	144, 296
Bst4CI	ACNGT	3 cut(s)	341, 353, 359
BstACI	GRCGYC	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	66, 104
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	8, 14
BstKTI	GATC	2 cut(s)	199, 325
BstMBI	GATC	2 cut(s)	196, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 84
BstNI	CCWGG	2 cut(s)	144, 296
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	142, 294
BstSLI	GKGCMC	2 cut(s)	233, 275
BstUI	CGCG	1 cut(s)	14
BsuRI	GGCC	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	66, 104
BtsI	GCAGTG	3 cut(s)	100, 375, 402
BtsIMutI	CAGTG	4 cut(s)	100, 130, 375, 402
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	2 cut(s)	8, 14
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	3 cut(s)	49, 100, 245
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	4 cut(s)	78, 118, 294, 348
CviKI_1	RGCY	4 cut(s)	78, 118, 294, 348
DpnI	GATC	2 cut(s)	198, 324
DpnII	GATC	2 cut(s)	196, 322
Eco130I	CCWWGG	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	142, 294
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	1 cut(s)	12
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	1 cut(s)	8
FauNDI	CATATG	1 cut(s)	391
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	2 cut(s)	53, 111
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	2 cut(s)	266, 317
GlaI	GCGC	2 cut(s)	7, 13
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	2 cut(s)	115, 200
HgaI	GACGC	3 cut(s)	49, 100, 245
HhaI	GCGC	2 cut(s)	8, 14
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	12
Hin6I	GCGC	2 cut(s)	6, 12
HinP1I	GCGC	2 cut(s)	6, 12
HinfI	GANTC	2 cut(s)	176, 283
HpaII	CCGG	2 cut(s)	115, 200
HphI	GGTGA	2 cut(s)	310, 332
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	2 cut(s)	249, 385
Hpy99I	CGWCG	2 cut(s)	19, 65
HpyCH4III	ACNGT	3 cut(s)	341, 353, 359
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	150, 395, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 84
HpySE526I	ACGT	1 cut(s)	17
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	12
HspAI	GCGC	2 cut(s)	6, 12
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	196, 322
LmnI	GCTCC	1 cut(s)	123
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	2 cut(s)	266, 317
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	3 cut(s)	335, 353, 385
MalI	GATC	2 cut(s)	198, 324
MboI	GATC	2 cut(s)	196, 322
MhlI	GDGCHC	2 cut(s)	233, 275
MluCI	AATT	2 cut(s)	104, 305
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	2 cut(s)	41, 44
MroXI	GAANNNNTTC	1 cut(s)	309
MspI	CCGG	2 cut(s)	115, 200
MspR9I	CCNGG	2 cut(s)	144, 296
MvaI	CCWGG	2 cut(s)	144, 296
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	18, 84
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	2 cut(s)	196, 322
NlaIII	CATG	1 cut(s)	12
NlaIV	GGNNCC	5 cut(s)	119, 141, 161, 230, 272
NmeAIII	GCCGAG	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	212
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PsiI	TTATAA	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	142, 294
PspGI	CCWGG	2 cut(s)	142, 294
PspN4I	GGNNCC	5 cut(s)	119, 141, 161, 230, 272
PspPI	GGNCC	1 cut(s)	292
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	2 cut(s)	196, 322
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	144, 296
SduI	GDGCHC	2 cut(s)	233, 275
SetI	ASST	2 cut(s)	20, 322
SfaNI	GCATC	1 cut(s)	252
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	2 cut(s)	104, 305
SsiI	CCGC	2 cut(s)	70, 210
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	2 cut(s)	266, 317
StyD4I	CCNGG	2 cut(s)	142, 294
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	3 cut(s)	341, 353, 359
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	104, 305
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	283
TscAI	CASTG	4 cut(s)	100, 130, 382, 402
TseFI	GTSAC	1 cut(s)	385
Tsp45I	GTSAC	1 cut(s)	385
TspRI	CASTG	4 cut(s)	100, 130, 382, 402
XceI	RCATGY	1 cut(s)	12
XmaJI	CCTAGG	1 cut(s)	316
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	2 cut(s)	266, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.