Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004033

Physical Location & Seq

Genomic Coordinates Forward (+)

26618099 .. 26620421

Gene Structure 2323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAAGCAGAGAACCTGGCCTTGTAGATCTGAAGGATCTCGATTCTCCTCCTTATCGTTTTTGAAACCTCACGACAAGGATAAACGGAGTAGAATTTCATCAATCAACAAAGCAACGGCGAAGTCAACCACAAGTTCAAGGTCTTCTTCTTCCTCTTCTTCTTCACGTCCTCCATCGAATGAGTTCGGAGATTTCTCGATGCTTCCGTATGATATACTGATGAAGATTGCTGCACCGTTTAGTCATCCGAATCTTCAAGCGGCGTCTTTGGTATGTAAATCGTGGAGAGACGCGCTAAAGCCGTTGCGAGAGTCGATGTTGTTGATTCGGTGGGGGAAAAAGTACAAGCACGGAAGAGGAGGTGTGCGAGCGAATCTCGACAAAGCTCTTGATTCGTTTCTGAAAGGAGCTATGCGTGGATCCACGCTCGCTATGGTCGACGCTGGGCTTGTGTATTGGGAAAGAGGAGAGAAGGAGAAAGCGGTGAATTTGTATCGGAGAGCTTCGGAGCTTGGTGATGCTGTTGGTCAATGTAATTTAGGGATTGCTTATCTTCAAGTTCAACCTTCAAATCCCAAGGAAGCGATGAAATGGTTGAAACAATCTGCAGAGAATGGTTATGTTCGAGCACAGTATCAGTTAGCTCTTTGTTTACACCATGGTCGGGTCGTGCAAACCAATCTGCTTGAAGCTACTAAATGGTACCTAAAGGCAGCAGAAGGTGGGTATGTACGAGCGATGTATAACATTTCGCTTTGTTATTCGGTTGGAGAAGGCTTACCACAAAACCGCAAGCTAGCAAGAAAATGGATGAAACGAGCAGCTGATCACGGCCACAGTAAAGCTCAGTTTGAACACGGCCTTGCTCTATTTTCTGAAGGGGAGATGCTGAAGTCAGTGCTTTACTTAGAACTTGCCGAACGTGGTGGCGAAGCAGCTGCTACTCCCGTCAAAGAAGTTGTACACCAACAGCTTTCTGCAACTTTTGGTGGTCAGGCCGTACACCATGCCATACACCAAGCCAATAACTGGCGTCCTCTACCAGTTACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Sel1

Protein Analysis

351

Amino Acids

39.13

Weight (kDa)

9.9

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	65 - 100	3.1e-06	F-box domain
Sel1	PF08238	209 - 243	1.9e-06	Sel1 repeat
Sel1	PF08238	245 - 279	4.9e-09	Sel1 repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70590
fragaria_vesca	FvH4_4g05690 FvH4_4g25470
malus_domestica	MD13G1102600.v1.1
prunus_persica	Prupe.1G243200_v2.0.a1
pyrus_communis	pycom13g08970
rosa_chinensis	RchiOBHm_Chr1g0318701 RchiOBHm_Chr4g0432791 RchiOBHm_Chr4g0436601 RchiOBHm_Chr7g0240871
rosa_laevigata	RLG00000000615 RLG00000006811 RLG00000009495
rosa_multiflora	Rmu_sc0002313.1_g000016 Rmu_sc0005234.1_g000002 Rmu_sc0012180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219440 Rroxscaffold_5G00341770 Rroxscaffold_5G00374240
rosa_rugosa	Rorug03G0346700 Rorug04G0262900 Rorug04G0263000 Rorug07G0339800
rosa_samantha	Rh4AG317000 Rh4BG325300 Rh4DG320400 Rh6DG077200 Rh7AG494400 Rh7BG466100 Rh7CG512600 Rh7DG479400
rosa_wichuraiana	Rw4G027580 Rw7G041820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	702
AccB1I	GGYRCC	1 cut(s)	702
AccB7I	CCANNNNNTGG	1 cut(s)	1029
AccI	GTMKAC	1 cut(s)	438
AccII	CGCG	1 cut(s)	293
AciI	CCGC	3 cut(s)	260, 482, 790
AclWI	GGATC	3 cut(s)	43, 414, 427
AcoI	YGGCCR	1 cut(s)	832
AcsI	RAATTY	2 cut(s)	93, 487
AcuI	CTGAAG	3 cut(s)	51, 897, 911
AcyI	GRCGYC	2 cut(s)	263, 1033
AfaI	GTAC	5 cut(s)	344, 704, 732, 963, 1002
AfiI	CCNNNNNNNGG	2 cut(s)	664, 1029
AgsI	TTSAA	9 cut(s)	64, 138, 257, 557, 563, 570, 598, 689, 854
AjiI	CACGTC	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	3 cut(s)	43, 414, 427
AoxI	GGCC	4 cut(s)	17, 832, 859, 996
ApeKI	GCWGC	5 cut(s)	230, 713, 821, 935, 938
ApoI	RAATTY	2 cut(s)	93, 487
Asp700I	GAANNNNTTC	1 cut(s)	182
Asp718I	GGTACC	1 cut(s)	702
AspLEI	GCGC	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	496, 527
AsuNHI	GCTAGC	1 cut(s)	796
BamHI	GGATCC	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	5 cut(s)	217, 725, 833, 925, 947
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	5 cut(s)	132, 286, 847, 874, 983
BcgI	CGANNNNNNTGC	2 cut(s)	920, 954
BciT130I	CCWGG	1 cut(s)	16
BclI	TGATCA	1 cut(s)	826
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	797
BfmI	CTRYAG	1 cut(s)	606
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	6 cut(s)	231, 261, 714, 822, 936, 939
BlsI	GCNGC	6 cut(s)	232, 262, 715, 823, 937, 940
Bme1390I	CCNGG	1 cut(s)	16
BmgBI	CACGTC	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	421, 704
BmrFI	CCNGG	1 cut(s)	16
BmsI	GCATC	3 cut(s)	189, 508, 876
BmtI	GCTAGC	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	360, 392
BsaHI	GRCGYC	2 cut(s)	263, 1033
BsaJI	CCNNGG	2 cut(s)	576, 658
Bsc4I	CCNNNNNNNGG	2 cut(s)	664, 1029
Bse1I	ACTGG	2 cut(s)	1034, 1043
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	2 cut(s)	576, 658
BseGI	GGATG	2 cut(s)	244, 816
BseLI	CCNNNNNNNGG	2 cut(s)	664, 1029
BseMII	CTCAG	1 cut(s)	860
BseNI	ACTGG	2 cut(s)	1034, 1043
BseRI	GAGGAG	3 cut(s)	37, 372, 480
BseXI	GCAGC	5 cut(s)	217, 725, 833, 925, 947
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	4 cut(s)	19, 834, 861, 998
BshNI	GGYRCC	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	631
BslI	CCNNNNNNNGG	2 cut(s)	664, 1029
BsmAI	GTCTC	1 cut(s)	282
BsmBI	CGTCTC	1 cut(s)	282
BsnI	GGCC	4 cut(s)	19, 834, 861, 998
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp1407I	TGTACA	1 cut(s)	961
Bsp143I	GATC	4 cut(s)	26, 35, 419, 826
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	3 cut(s)	260, 482, 790
BspANI	GGCC	4 cut(s)	19, 834, 861, 998
BspCNI	CTCAG	1 cut(s)	859
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	2 cut(s)	421, 704
BspMAI	CTGCAG	1 cut(s)	610
BspOI	GCTAGC	1 cut(s)	800
BspPI	GGATC	3 cut(s)	43, 414, 427
BspT107I	GGYRCC	1 cut(s)	702
BsrGI	TGTACA	1 cut(s)	961
BsrI	ACTGG	2 cut(s)	1034, 1043
BssECI	CCNNGG	2 cut(s)	576, 658
BssMI	GATC	4 cut(s)	26, 35, 419, 826
BssNI	GRCGYC	2 cut(s)	263, 1033
BssT1I	CCWWGG	2 cut(s)	576, 658
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	3 cut(s)	237, 633, 839
Bst6I	CTCTTC	2 cut(s)	160, 349
BstACI	GRCGYC	2 cut(s)	263, 1033
BstAUI	TGTACA	1 cut(s)	961
BstC8I	GCNNGC	4 cut(s)	369, 429, 794, 798
BstDEI	CTNAG	2 cut(s)	846, 907
BstDSI	CCRYGG	1 cut(s)	658
BstF5I	GGATG	2 cut(s)	244, 816
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	4 cut(s)	29, 38, 422, 829
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	4 cut(s)	26, 35, 419, 826
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	606
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	5 cut(s)	217, 725, 833, 925, 947
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	3 cut(s)	26, 35, 419
BstYI	RGATCY	3 cut(s)	26, 35, 419
BsuRI	GGCC	4 cut(s)	19, 834, 861, 998
BtgI	CCRYGG	1 cut(s)	658
BtgZI	GCGATG	2 cut(s)	599, 752
BtrI	CACGTC	1 cut(s)	167
BtsCI	GGATG	2 cut(s)	244, 816
BtsIMutI	CAGTG	1 cut(s)	903
Cac8I	GCNNGC	4 cut(s)	369, 429, 794, 798
CfoI	GCGC	1 cut(s)	295
CseI	GACGC	4 cut(s)	252, 299, 449, 1022
Csp6I	GTAC	5 cut(s)	343, 703, 731, 962, 1001
CviAII	CATG	2 cut(s)	659, 1007
CviQI	GTAC	5 cut(s)	343, 703, 731, 962, 1001
DdeI	CTNAG	2 cut(s)	846, 907
DpnI	GATC	4 cut(s)	28, 37, 421, 828
DpnII	GATC	4 cut(s)	26, 35, 419, 826
EaeI	YGGCCR	1 cut(s)	832
Eam1104I	CTCTTC	2 cut(s)	160, 349
EarI	CTCTTC	2 cut(s)	160, 349
Eco130I	CCWWGG	2 cut(s)	576, 658
Eco57I	CTGAAG	3 cut(s)	51, 897, 911
EcoRII	CCWGG	1 cut(s)	14
EcoT14I	CCWWGG	2 cut(s)	576, 658
ErhI	CCWWGG	2 cut(s)	576, 658
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	2 cut(s)	662, 1010
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FatI	CATG	2 cut(s)	658, 1006
FbaI	TGATCA	1 cut(s)	826
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	6 cut(s)	231, 261, 714, 822, 936, 939
FokI	GGATG	2 cut(s)	231, 823
Fsp4HI	GCNGC	6 cut(s)	231, 261, 714, 822, 936, 939
FspBI	CTAG	1 cut(s)	797
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	6 cut(s)	231, 261, 714, 822, 936, 939
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	4 cut(s)	19, 834, 861, 998
HgaI	GACGC	4 cut(s)	252, 299, 449, 1022
HhaI	GCGC	1 cut(s)	295
Hin1I	GRCGYC	2 cut(s)	263, 1033
Hin1II	CATG	2 cut(s)	662, 1010
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	2 cut(s)	126, 439
HindII	GTYRAC	2 cut(s)	126, 439
HinfI	GANTC	6 cut(s)	42, 250, 311, 325, 373, 392
HphI	GGTGA	2 cut(s)	496, 527
Hpy166II	GTNNAC	5 cut(s)	126, 439, 653, 964, 1003
Hpy188I	TCNGA	7 cut(s)	31, 188, 249, 402, 498, 508, 877
Hpy188III	TCNNGA	5 cut(s)	39, 71, 196, 377, 389
Hpy8I	GTNNAC	5 cut(s)	126, 439, 653, 964, 1003
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	6 cut(s)	26, 466, 576, 713, 767, 872
HpyCH4III	ACNGT	3 cut(s)	237, 633, 839
HpyCH4IV	ACGT	2 cut(s)	166, 922
HpyCH4V	TGCA	4 cut(s)	233, 608, 673, 980
HpyF3I	CTNAG	2 cut(s)	846, 907
HpySE526I	ACGT	2 cut(s)	166, 922
Hsp92I	GRCGYC	2 cut(s)	263, 1033
Hsp92II	CATG	2 cut(s)	662, 1010
HspAI	GCGC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	706
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	4 cut(s)	26, 35, 419, 826
LmnI	GCTCC	2 cut(s)	407, 508
LpnPI	CCDG	4 cut(s)	28, 429, 980, 1015
Lsp1109I	GCAGC	5 cut(s)	217, 725, 833, 925, 947
LweI	GCATC	3 cut(s)	189, 508, 876
MaeI	CTAG	1 cut(s)	797
MaeII	ACGT	2 cut(s)	166, 922
MaeIII	GTNAC	1 cut(s)	1045
MalI	GATC	4 cut(s)	28, 37, 421, 828
MboI	GATC	4 cut(s)	26, 35, 419, 826
MflI	RGATCY	3 cut(s)	26, 35, 419
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	3 cut(s)	93, 487, 535
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	748
MnlI	CCTC	8 cut(s)	58, 78, 163, 180, 350, 353, 458, 1047
MroXI	GAANNNNTTC	1 cut(s)	182
MspA1I	CMGCKG	2 cut(s)	824, 938
MspR9I	CCNGG	1 cut(s)	16
MvaI	CCWGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	658
NdeII	GATC	4 cut(s)	26, 35, 419, 826
NheI	GCTAGC	1 cut(s)	796
NlaIII	CATG	2 cut(s)	662, 1010
NlaIV	GGNNCC	2 cut(s)	421, 704
PcsI	WCGNNNNNNNCGW	2 cut(s)	203, 435
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	5 cut(s)	42, 250, 325, 373, 392
PflMI	CCANNNNNTGG	1 cut(s)	1029
PkrI	GCNGC	6 cut(s)	232, 262, 715, 823, 937, 940
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	421, 704
PstI	CTGCAG	1 cut(s)	610
PsuI	RGATCY	3 cut(s)	26, 35, 419
PvuII	CAGCTG	2 cut(s)	824, 938
RsaI	GTAC	5 cut(s)	344, 704, 732, 963, 1002
RsaNI	GTAC	5 cut(s)	343, 703, 731, 962, 1001
SalI	GTCGAC	1 cut(s)	437
SatI	GCNGC	6 cut(s)	231, 261, 714, 822, 936, 939
Sau3AI	GATC	4 cut(s)	26, 35, 419, 826
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	3 cut(s)	189, 508, 876
SfcI	CTRYAG	1 cut(s)	606
Sse9I	AATT	3 cut(s)	93, 487, 535
SsiI	CCGC	3 cut(s)	260, 482, 790
SspMI	CTAG	1 cut(s)	797
StyD4I	CCNGG	1 cut(s)	14
StyI	CCWWGG	2 cut(s)	576, 658
TaaI	ACNGT	3 cut(s)	237, 633, 839
TaiI	ACGT	2 cut(s)	169, 925
TaqI	TCGA	8 cut(s)	40, 176, 197, 314, 378, 438, 625, 1051
TasI	AATT	3 cut(s)	93, 487, 535
TatI	WGTACW	2 cut(s)	342, 961
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	5 cut(s)	42, 250, 325, 373, 392
TscAI	CASTG	1 cut(s)	903
TseI	GCWGC	5 cut(s)	230, 713, 821, 935, 938
TspDTI	ATGAA	5 cut(s)	17, 87, 236, 602, 827
TspGWI	ACGGA	3 cut(s)	100, 195, 366
TspRI	CASTG	1 cut(s)	903
Van91I	CCANNNNNTGG	1 cut(s)	1029
XapI	RAATTY	2 cut(s)	93, 487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	182
XspI	CTAG	1 cut(s)	797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.