Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004033

Physical Location & Seq

Genomic Coordinates Reverse (-)

53597039 .. 53599153

Gene Structure 2115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009495

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAAGAAACTCTCTTTCATGTTTAATGTGCTTGTCCTACTAGTACTTCTGTTATCTATAGTATCATCCAAGATTAGTAGCTACGGAAAATCCTTTAGATTAGTTGGAGTTAGAAATAGACAACTTCAATATGCCAACAAATGTAACGCCGGTGCCCAAAATGATTGTTGTGGCTATGGAGATCAAGGGAGTAATGGTGAGACAGGTGAGGGAGGCAATAGCAATATTGGTGGTGGAGGCGGATACGGTGGTGGGGGTGTTGATAAAGGGGGTGGAGGAGGTGGCGGCGGTGGTGGTGGAGAGGGTTTAGGTGGATATGGTGGAGGTTATGGCTTCGGAAGCAATGGAAGTGGCGGCGGTGGTGGAGGAGGCGGAGGAGGTGGTGGTGGTGGAGGGGGTTTAGGTGGATATGGTGGAGGTTATGGCTTCGGAAGCAATGGAAGTGGCGGCGGTGGTGGAGGTGGTGGAGGAGGCGGAGGCGGAGGAGGAGGTGGTGGCGGTGGTGTGTTTTCAATCTTCTGGTTGACTGTTTTCAATTGTGATGTGGCCGGGGAGGCCACGAAGTTCTTGACTTGGAGGAAGCAGTTCAAGCACGGCCGCGGCGACTTCAAACCTAACGTCAACAATGCTCTCAAGATGTTCTTGAAGGCTGCCGAGCTTGGGTCCACGAAGGCGATGGTCGATGCCGGACTCATATTCTGGGAGAGAGGCGACAAGGATAAGGCGTTTGGGTTGTACCGGGAAGCTGCCGAGGCCGGTGACCGGAATGCGCAGGGCAATTTGGGAATGTGGTATTTGCAAGGTATTACAACTCCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Sel1

Protein Analysis

274

Amino Acids

26.48

Weight (kDa)

9.1

Isoelectric Point (pI)

31.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70590
fragaria_vesca	FvH4_4g05690 FvH4_4g25470
malus_domestica	MD13G1102600.v1.1
prunus_persica	Prupe.1G243200_v2.0.a1
pyrus_communis	pycom13g08970
rosa_chinensis	RchiOBHm_Chr1g0318701 RchiOBHm_Chr4g0432791 RchiOBHm_Chr4g0436601 RchiOBHm_Chr7g0240871
rosa_laevigata	RLG00000000615 RLG00000006811 RLG00000009495
rosa_multiflora	Rmu_sc0002313.1_g000016 Rmu_sc0005234.1_g000002 Rmu_sc0012180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219440 Rroxscaffold_5G00341770 Rroxscaffold_5G00374240
rosa_rugosa	Rorug03G0346700 Rorug04G0262900 Rorug04G0263000 Rorug07G0339800
rosa_samantha	Rh4AG317000 Rh4BG325300 Rh4DG320400 Rh6DG077200 Rh7AG494400 Rh7BG466100 Rh7CG512600 Rh7DG479400
rosa_wichuraiana	Rw4G027580 Rw7G041820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	771
AccB1I	GGYRCC	1 cut(s)	152
AccII	CGCG	1 cut(s)	600
AcoI	YGGCCR	2 cut(s)	546, 595
AfaI	GTAC	2 cut(s)	45, 737
AfiI	CCNNNNNNNGG	2 cut(s)	660, 762
AgsI	TTSAA	6 cut(s)	128, 513, 535, 589, 610, 646
AhlI	ACTAGT	1 cut(s)	40
AluBI	AGCT	3 cut(s)	81, 658, 746
AluI	AGCT	3 cut(s)	81, 658, 746
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	4 cut(s)	546, 555, 595, 753
ApeKI	GCWGC	2 cut(s)	650, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	603, 635
Asp700I	GAANNNNTTC	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	772
AspS9I	GGNCC	1 cut(s)	663
AsuC2I	CCSGG	2 cut(s)	550, 740
AsuHPI	GGTGA	3 cut(s)	209, 218, 770
AvaII	GGWCC	1 cut(s)	663
BaeGI	GKGCMC	1 cut(s)	157
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BanI	GGYRCC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	637, 733
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	1 cut(s)	610
BciVI	GTATCC	1 cut(s)	236
BcnI	CCSGG	2 cut(s)	550, 740
BcoDI	GTCTC	1 cut(s)	194
BcuI	ACTAGT	1 cut(s)	40
BfaI	CTAG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	554
BisI	GCNGC	7 cut(s)	286, 355, 448, 598, 601, 651, 747
BlsI	GCNGC	7 cut(s)	287, 356, 449, 599, 602, 652, 748
BmcAI	AGTACT	1 cut(s)	45
Bme1390I	CCNGG	2 cut(s)	550, 740
Bme18I	GGWCC	1 cut(s)	663
BmgT120I	GGNCC	1 cut(s)	663
BmiI	GGNNCC	2 cut(s)	154, 664
BmrFI	CCNGG	2 cut(s)	550, 740
BmsI	GCATC	1 cut(s)	673
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	2 cut(s)	550, 740
BsaJI	CCNNGG	3 cut(s)	549, 598, 750
BsaWI	WCCGGW	1 cut(s)	762
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	660, 762
Bse118I	RCCGGY	2 cut(s)	149, 755
Bse3DI	GCAATG	2 cut(s)	349, 442
BseDI	CCNNGG	3 cut(s)	549, 598, 750
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	660, 762
BseMI	GCAATG	2 cut(s)	349, 442
BseRI	GAGGAG	6 cut(s)	291, 381, 390, 483, 498, 501
BseSI	GKGCMC	1 cut(s)	157
BseX3I	CGGCCG	1 cut(s)	595
BseXI	GCAGC	2 cut(s)	637, 733
Bsh1236I	CGCG	1 cut(s)	600
Bsh1285I	CGRYCG	1 cut(s)	598
BshFI	GGCC	4 cut(s)	548, 557, 597, 755
BshNI	GGYRCC	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	598
BsiSI	CCGG	6 cut(s)	150, 549, 687, 739, 756, 763
BslI	CCNNNNNNNGG	2 cut(s)	660, 762
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	4 cut(s)	548, 557, 597, 755
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	181
BspANI	GGCC	4 cut(s)	548, 557, 597, 755
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	2 cut(s)	154, 664
BspT107I	GGYRCC	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	349, 442
BsrFI	RCCGGY	2 cut(s)	149, 755
BssAI	RCCGGY	2 cut(s)	149, 755
BssECI	CCNNGG	3 cut(s)	549, 598, 750
BssMI	GATC	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	248, 529
BstDEI	CTNAG	1 cut(s)	819
BstDSI	CCRYGG	1 cut(s)	598
BstEII	GGTNACC	1 cut(s)	758
BstF5I	GGATG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	772
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	181
BstMCI	CGRYCG	1 cut(s)	598
BstMWI	GCNNNNNNNGC	5 cut(s)	339, 432, 554, 589, 752
BstPI	GGTNACC	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	548, 738
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	2 cut(s)	637, 733
BstZI	CGGCCG	1 cut(s)	595
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	4 cut(s)	548, 557, 597, 755
BtgI	CCRYGG	1 cut(s)	598
BtgZI	GCGATG	1 cut(s)	689
BtsCI	GGATG	1 cut(s)	65
CfoI	GCGC	1 cut(s)	772
Cfr10I	RCCGGY	2 cut(s)	149, 755
Cfr13I	GGNCC	1 cut(s)	663
Cfr42I	CCGCGG	1 cut(s)	601
Csp6I	GTAC	2 cut(s)	44, 736
CspCI	CAANNNNNGTGG	6 cut(s)	211, 246, 331, 366, 424, 459
CviAII	CATG	1 cut(s)	19
CviQI	GTAC	2 cut(s)	44, 736
DdeI	CTNAG	1 cut(s)	819
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	2 cut(s)	546, 595
EagI	CGGCCG	1 cut(s)	595
EciI	GGCGGA	4 cut(s)	255, 387, 489, 495
EclXI	CGGCCG	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	663
Eco52I	CGGCCG	1 cut(s)	595
Eco91I	GGTNACC	1 cut(s)	758
EcoO65I	GGTNACC	1 cut(s)	758
FaeI	CATG	1 cut(s)	22
FaiI	YATR	9 cut(s)	20, 59, 132, 177, 318, 330, 411, 423, 695
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	7 cut(s)	286, 355, 448, 598, 601, 651, 747
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	7 cut(s)	286, 355, 448, 598, 601, 651, 747
FspBI	CTAG	1 cut(s)	41
FspI	TGCGCA	1 cut(s)	771
GlaI	GCGC	1 cut(s)	771
GluI	GCNGC	7 cut(s)	286, 355, 448, 598, 601, 651, 747
HaeIII	GGCC	4 cut(s)	548, 557, 597, 755
HapII	CCGG	6 cut(s)	150, 549, 687, 739, 756, 763
HhaI	GCGC	1 cut(s)	772
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	770
HinP1I	GCGC	1 cut(s)	770
HincII	GTYRAC	2 cut(s)	525, 622
HindII	GTYRAC	2 cut(s)	525, 622
HinfI	GANTC	1 cut(s)	690
HpaII	CCGG	6 cut(s)	150, 549, 687, 739, 756, 763
HphI	GGTGA	3 cut(s)	209, 218, 770
Hpy166II	GTNNAC	3 cut(s)	525, 622, 666
Hpy188I	TCNGA	2 cut(s)	338, 431
Hpy188III	TCNNGA	3 cut(s)	568, 634, 643
Hpy8I	GTNNAC	3 cut(s)	525, 622, 666
HpyAV	CCTTC	2 cut(s)	640, 664
HpyCH4III	ACNGT	2 cut(s)	248, 529
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	1 cut(s)	799
HpyF10VI	GCNNNNNNNGC	5 cut(s)	339, 432, 554, 589, 752
HpyF3I	CTNAG	1 cut(s)	819
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	770
KspI	CCGCGG	1 cut(s)	601
Kzo9I	GATC	1 cut(s)	181
Lsp1109I	GCAGC	2 cut(s)	637, 733
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	143, 758
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	16, 508
MfeI	CAATTG	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	2 cut(s)	535, 778
MlyI	GAGTC	1 cut(s)	684
MmeI	TCCRAC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	584
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	600
MspI	CCGG	6 cut(s)	150, 549, 687, 739, 756, 763
MspR9I	CCNGG	2 cut(s)	550, 740
MunI	CAATTG	1 cut(s)	535
Mva1269I	GAATGC	1 cut(s)	772
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	5 cut(s)	339, 432, 554, 589, 752
NciI	CCSGG	2 cut(s)	550, 740
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	154, 664
NmeAIII	GCCGAG	2 cut(s)	679, 775
NmuCI	GTSAC	1 cut(s)	758
NsbI	TGCGCA	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PctI	GAATGC	1 cut(s)	772
PdmI	GAANNNNTTC	1 cut(s)	584
PkrI	GCNGC	7 cut(s)	287, 356, 449, 599, 602, 652, 748
PleI	GAGTC	1 cut(s)	684
PpsI	GAGTC	1 cut(s)	684
PspEI	GGTNACC	1 cut(s)	758
PspN4I	GGNNCC	2 cut(s)	154, 664
PspPI	GGNCC	1 cut(s)	663
RsaI	GTAC	2 cut(s)	45, 737
RsaNI	GTAC	2 cut(s)	44, 736
SacII	CCGCGG	1 cut(s)	601
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	7 cut(s)	286, 355, 448, 598, 601, 651, 747
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	663
ScaI	AGTACT	1 cut(s)	45
SchI	GAGTC	1 cut(s)	684
ScrFI	CCNGG	2 cut(s)	550, 740
SduI	GDGCHC	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	1 cut(s)	57
SfiI	GGCCNNNNNGGCC	1 cut(s)	554
Sfr303I	CCGCGG	1 cut(s)	601
SgrAI	CRCCGGYG	1 cut(s)	149
SgrBI	CCGCGG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
SpeI	ACTAGT	1 cut(s)	40
Sse9I	AATT	2 cut(s)	535, 778
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	548, 738
TaaI	ACNGT	2 cut(s)	248, 529
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	1 cut(s)	681
TasI	AATT	2 cut(s)	535, 778
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	5 cut(s)	288, 357, 450, 600, 603
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	2 cut(s)	650, 746
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	2 cut(s)	7, 17
TspGWI	ACGGA	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	663
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.