Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004033

Physical Location & Seq

Genomic Coordinates Reverse (-)

5987603 .. 5989225

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAGCAGACGACGTGGCCTGGTCGATCGGACGGTTCCCGCTTCAAGGCGCTCCCGCTATGGAGCGCCAAGGGCGGAAGTTACAGCGATCTTCACCGGACAAAGCACGGCAATCGAACCGCCGCTAGTAGATTATCATCAACGGACCGTCGGGATTACTCGACGCTGCCGGTAGAACTGGTGACGAAAATCGGGCTGACGCTCAGCCACCCGAGCCTGAGCGCGGCGTCGTTAGCGTGCAAGACGTGGTGCGAGGCGCTGCAGCAGCTGAGGCAGGCGATGATGTACATGCGGTGGGGGAAGCGGTTCAAGCACGGCCGCGGAGGAGTCAGCCGGAATACGGACAAGGCGCTCGACGCGTTTCTGATGGGTGCGGCTTGTGGTTCCCCCATGGCTATGGTGGACGCCGGGCTCATATACTGGGAGAGGGGCCTCAAGGAGAAGGCCGTCGCTTTGTATCAGAAAGCTGCGGAATTGGGCGACCCTGCTGGGCAGTGCAATTTGGGGATTTCGTATTTGCAAGCTGAACCTCCAAATCCAAAGGAAGCTGTAAAATGGTTATATTGTGCGTCTTACGACGGCCATACCCGAGCTCAGTACCAACTGGCACTTTGTCTGCATCAAGGCCGTGGGGTGAATCGTAACATAAAAGAGGCGGCTAGATGGTATTTGAAAGCTGCAGAAGGTGGTTATTTGCGTGCCATGTATAATGTATCTCTGTGTTACAAATTTGGGGAAGGATTGGTTCGCAGTTATAGCCAAGCGAGAAAGTGGATGAAGCAGGCAGCTGATTGCGGTCACAGTAAAGCTCAATATGAGTATGGGGTCGCTCTTTTTTCTAAACAAGAAAAGATGAAGGCTGTAGTGTACTTGGAACTTGCTACCCGAGCTGGGGAAAGTGCCGCGGCTCATGTCAAGAATGTAATTCTTCAACAGCTTTCAGCAACTTCGCGTGATCATGTAATGTGTATTGTCGACAATTGGCGTGCTTCGTCCTCATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Sel1

Protein Analysis

336

Amino Acids

37.14

Weight (kDa)

9.65

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sel1	PF08238	197 - 231	1.3e-09	Sel1 repeat
Sel1	PF08238	233 - 267	3.6e-08	Sel1 repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70590
fragaria_vesca	FvH4_4g05690 FvH4_4g25470
malus_domestica	MD13G1102600.v1.1
prunus_persica	Prupe.1G243200_v2.0.a1
pyrus_communis	pycom13g08970
rosa_chinensis	RchiOBHm_Chr1g0318701 RchiOBHm_Chr4g0432791 RchiOBHm_Chr4g0436601 RchiOBHm_Chr7g0240871
rosa_laevigata	RLG00000000615 RLG00000006811 RLG00000009495
rosa_multiflora	Rmu_sc0002313.1_g000016 Rmu_sc0005234.1_g000002 Rmu_sc0012180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219440 Rroxscaffold_5G00341770 Rroxscaffold_5G00374240
rosa_rugosa	Rorug03G0346700 Rorug04G0262900 Rorug04G0263000 Rorug07G0339800
rosa_samantha	Rh4AG317000 Rh4BG325300 Rh4DG320400 Rh6DG077200 Rh7AG494400 Rh7BG466100 Rh7CG512600 Rh7DG479400
rosa_wichuraiana	Rw4G027580 Rw7G041820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	975
AccII	CGCG	5 cut(s)	224, 321, 359, 905, 952
AcoI	YGGCCR	2 cut(s)	316, 580
AcsI	RAATTY	1 cut(s)	728
AcyI	GRCGYC	2 cut(s)	227, 405
AfaI	GTAC	3 cut(s)	287, 599, 869
AfiI	CCNNNNNNNGG	5 cut(s)	46, 223, 340, 891, 892
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	4 cut(s)	46, 310, 673, 932
AjiI	CACGTC	2 cut(s)	15, 246
AjnI	CCWGG	1 cut(s)	19
Alw21I	GWGCWC	1 cut(s)	595
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	3 cut(s)	211, 588, 885
AoxI	GGCC	6 cut(s)	17, 316, 430, 444, 580, 625
ApeKI	GCWGC	7 cut(s)	166, 259, 262, 265, 467, 677, 785
ApoI	RAATTY	1 cut(s)	728
Asp700I	GAANNNNTTC	1 cut(s)	305
AspLEI	GCGC	5 cut(s)	52, 68, 224, 259, 352
AspS9I	GGNCC	2 cut(s)	145, 430
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	3 cut(s)	86, 193, 646
AvaI	CYCGRG	3 cut(s)	211, 588, 885
AvaII	GGWCC	1 cut(s)	145
BanII	GRGCYC	2 cut(s)	414, 595
Bbv12I	GWGCWC	1 cut(s)	595
BbvCI	CCTCAGC	1 cut(s)	269
BbvI	GCAGC	7 cut(s)	153, 246, 274, 277, 454, 664, 797
BccI	CCATC	2 cut(s)	361, 657
BceAI	ACGGC	5 cut(s)	124, 331, 431, 595, 612
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	1 cut(s)	21
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	1 cut(s)	409
BfaI	CTAG	2 cut(s)	126, 660
BfmI	CTRYAG	3 cut(s)	260, 678, 861
BfoI	RGCGCY	4 cut(s)	53, 69, 260, 353
BlpI	GCTNAGC	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	21, 409
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	3 cut(s)	211, 588, 885
BmgBI	CACGTC	2 cut(s)	15, 246
BmgT120I	GGNCC	2 cut(s)	145, 430
BmiI	GGNNCC	3 cut(s)	37, 385, 431
BmrFI	CCNGG	2 cut(s)	21, 409
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	1 cut(s)	628
BmuI	ACTGGG	1 cut(s)	430
Bpu10I	CCTNAGC	2 cut(s)	218, 269
Bpu1102I	GCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	136
BsaHI	GRCGYC	2 cut(s)	227, 405
BsaJI	CCNNGG	5 cut(s)	69, 319, 390, 628, 903
BsaWI	WCCGGW	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 223, 340, 891, 892
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	3 cut(s)	183, 425, 609
Bse8I	GATNNNNATC	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	5 cut(s)	69, 319, 390, 628, 903
BseGI	GGATG	1 cut(s)	780
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	5 cut(s)	46, 223, 340, 891, 892
BseMII	CTCAG	4 cut(s)	209, 217, 260, 608
BseNI	ACTGG	3 cut(s)	183, 425, 609
BseRI	GAGGAG	1 cut(s)	339
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	7 cut(s)	153, 246, 274, 277, 454, 664, 797
BseYI	CCCAGC	2 cut(s)	488, 890
Bsh1236I	CGCG	5 cut(s)	224, 321, 359, 905, 952
Bsh1285I	CGRYCG	2 cut(s)	29, 319
BshFI	GGCC	6 cut(s)	19, 318, 432, 446, 582, 627
BsiEI	CGRYCG	2 cut(s)	29, 319
BsiHKAI	GWGCWC	1 cut(s)	595
BsiHKCI	CYCGRG	3 cut(s)	211, 588, 885
BsiSI	CCGG	4 cut(s)	97, 170, 334, 408
BslI	CCNNNNNNNGG	5 cut(s)	46, 223, 340, 891, 892
BsnI	GGCC	6 cut(s)	19, 318, 432, 446, 582, 627
BsoBI	CYCGRG	3 cut(s)	211, 588, 885
Bsp1286I	GDGCHC	2 cut(s)	414, 595
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	26, 88, 955
Bsp1720I	GCTNAGC	1 cut(s)	203
Bsp19I	CCATGG	1 cut(s)	390
BspANI	GGCC	6 cut(s)	19, 318, 432, 446, 582, 627
BspCNI	CTCAG	4 cut(s)	210, 216, 261, 607
BspFNI	CGCG	5 cut(s)	224, 321, 359, 905, 952
BspLI	GGNNCC	3 cut(s)	37, 385, 431
BspMAI	CTGCAG	2 cut(s)	264, 682
BsrFI	RCCGGY	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	183, 425, 609
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	5 cut(s)	69, 319, 390, 628, 903
BssMI	GATC	3 cut(s)	26, 88, 955
BssNI	GRCGYC	2 cut(s)	227, 405
BssT1I	CCWWGG	2 cut(s)	69, 390
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	35, 149, 803
BstACI	GRCGYC	2 cut(s)	227, 405
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	6 cut(s)	238, 276, 522, 699, 783, 987
BstDEI	CTNAG	4 cut(s)	203, 218, 269, 594
BstDSI	CCRYGG	4 cut(s)	319, 390, 628, 903
BstF5I	GGATG	1 cut(s)	780
BstFNI	CGCG	5 cut(s)	224, 321, 359, 905, 952
BstH2I	RGCGCY	4 cut(s)	53, 69, 260, 353
BstHHI	GCGC	5 cut(s)	52, 68, 224, 259, 352
BstKTI	GATC	3 cut(s)	29, 91, 958
BstMBI	GATC	3 cut(s)	26, 88, 955
BstMCI	CGRYCG	2 cut(s)	29, 319
BstMWI	GCNNNNNNNGC	9 cut(s)	72, 213, 233, 265, 271, 310, 356, 756, 887
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	19, 407
BstSFI	CTRYAG	3 cut(s)	260, 678, 861
BstUI	CGCG	5 cut(s)	224, 321, 359, 905, 952
BstV1I	GCAGC	7 cut(s)	153, 246, 274, 277, 454, 664, 797
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstZI	CGGCCG	1 cut(s)	316
BsuRI	GGCC	6 cut(s)	19, 318, 432, 446, 582, 627
BtgI	CCRYGG	4 cut(s)	319, 390, 628, 903
BtgZI	GCGATG	1 cut(s)	293
BtrI	CACGTC	2 cut(s)	15, 246
BtsCI	GGATG	1 cut(s)	780
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	1 cut(s)	500
Cac8I	GCNNGC	6 cut(s)	238, 276, 522, 699, 783, 987
CaiI	CAGNNNCTG	1 cut(s)	268
CfoI	GCGC	5 cut(s)	52, 68, 224, 259, 352
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	145, 430
Cfr42I	CCGCGG	2 cut(s)	322, 906
CpoI	CGGWCCG	1 cut(s)	145
CseI	GACGC	6 cut(s)	172, 208, 216, 365, 413, 558
Csp6I	GTAC	3 cut(s)	286, 598, 868
CspI	CGGWCCG	1 cut(s)	145
CviAII	CATG	5 cut(s)	289, 391, 703, 911, 959
CviQI	GTAC	3 cut(s)	286, 598, 868
DdeI	CTNAG	4 cut(s)	203, 218, 269, 594
DpnI	GATC	3 cut(s)	28, 90, 957
DpnII	GATC	3 cut(s)	26, 88, 955
EaeI	YGGCCR	2 cut(s)	316, 580
EagI	CGGCCG	1 cut(s)	316
EciI	GGCGGA	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	593
EclXI	CGGCCG	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	69, 390
Eco24I	GRGCYC	2 cut(s)	414, 595
Eco47I	GGWCC	1 cut(s)	145
Eco52I	CGGCCG	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	593
Eco88I	CYCGRG	3 cut(s)	211, 588, 885
EcoICRI	GAGCTC	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	69, 390
EcoT38I	GRGCYC	2 cut(s)	414, 595
ErhI	CCWWGG	2 cut(s)	69, 390
FaeI	CATG	5 cut(s)	292, 394, 706, 914, 962
FatI	CATG	5 cut(s)	288, 390, 702, 910, 958
FauI	CCCGC	2 cut(s)	47, 63
FbaI	TGATCA	1 cut(s)	955
FblI	GTMKAC	1 cut(s)	975
FokI	GGATG	1 cut(s)	787
FriOI	GRGCYC	2 cut(s)	414, 595
FspBI	CTAG	2 cut(s)	126, 660
GlaI	GCGC	5 cut(s)	51, 67, 223, 258, 351
GsaI	CCCAGC	2 cut(s)	492, 894
HaeII	RGCGCY	4 cut(s)	53, 69, 260, 353
HaeIII	GGCC	6 cut(s)	19, 318, 432, 446, 582, 627
HapII	CCGG	4 cut(s)	97, 170, 334, 408
HgaI	GACGC	6 cut(s)	172, 208, 216, 365, 413, 558
HhaI	GCGC	5 cut(s)	52, 68, 224, 259, 352
Hin1I	GRCGYC	2 cut(s)	227, 405
Hin1II	CATG	5 cut(s)	292, 394, 706, 914, 962
Hin6I	GCGC	5 cut(s)	50, 66, 222, 257, 350
HinP1I	GCGC	5 cut(s)	50, 66, 222, 257, 350
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HinfI	GANTC	2 cut(s)	327, 637
HpaII	CCGG	4 cut(s)	97, 170, 334, 408
HphI	GGTGA	3 cut(s)	86, 193, 646
Hpy166II	GTNNAC	3 cut(s)	403, 868, 976
Hpy188I	TCNGA	3 cut(s)	31, 366, 462
Hpy188III	TCNNGA	3 cut(s)	152, 916, 1005
Hpy8I	GTNNAC	3 cut(s)	403, 868, 976
Hpy99I	CGWCG	7 cut(s)	16, 153, 166, 232, 359, 452, 581
HpyAV	CCTTC	4 cut(s)	436, 677, 731, 850
HpyCH4III	ACNGT	3 cut(s)	35, 149, 803
HpyCH4IV	ACGT	2 cut(s)	14, 245
HpyCH4V	TGCA	6 cut(s)	240, 262, 498, 520, 619, 680
HpyF10VI	GCNNNNNNNGC	9 cut(s)	72, 213, 233, 265, 271, 310, 356, 756, 887
HpyF3I	CTNAG	4 cut(s)	203, 218, 269, 594
HpySE526I	ACGT	2 cut(s)	14, 245
Hsp92I	GRCGYC	2 cut(s)	227, 405
Hsp92II	CATG	5 cut(s)	292, 394, 706, 914, 962
HspAI	GCGC	5 cut(s)	50, 66, 222, 257, 350
Ksp22I	TGATCA	1 cut(s)	955
KspI	CCGCGG	2 cut(s)	322, 906
Kzo9I	GATC	3 cut(s)	26, 88, 955
LmnI	GCTCC	2 cut(s)	57, 63
Lsp1109I	GCAGC	7 cut(s)	153, 246, 274, 277, 454, 664, 797
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	2 cut(s)	126, 660
MaeII	ACGT	2 cut(s)	14, 245
MaeIII	GTNAC	5 cut(s)	80, 181, 641, 722, 797
MalI	GATC	3 cut(s)	28, 90, 957
MboI	GATC	3 cut(s)	26, 88, 955
MboII	GAAGA	3 cut(s)	83, 920, 993
MfeI	CAATTG	1 cut(s)	979
MhlI	GDGCHC	2 cut(s)	414, 595
MluCI	AATT	5 cut(s)	473, 499, 728, 924, 979
MluI	ACGCGT	1 cut(s)	357
MlyI	GAGTC	1 cut(s)	336
MnlI	CCTC	8 cut(s)	247, 264, 317, 420, 443, 540, 646, 1006
MroXI	GAANNNNTTC	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	4 cut(s)	268, 321, 788, 905
MspI	CCGG	4 cut(s)	97, 170, 334, 408
MspR9I	CCNGG	2 cut(s)	21, 409
MunI	CAATTG	1 cut(s)	979
MvaI	CCWGG	1 cut(s)	21
MvnI	CGCG	5 cut(s)	224, 321, 359, 905, 952
MwoI	GCNNNNNNNGC	9 cut(s)	72, 213, 233, 265, 271, 310, 356, 756, 887
NciI	CCSGG	1 cut(s)	409
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	26, 88, 955
NlaIII	CATG	5 cut(s)	292, 394, 706, 914, 962
NlaIV	GGNNCC	3 cut(s)	37, 385, 431
NmuCI	GTSAC	2 cut(s)	181, 797
NspI	RCATGY	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	637
Ple19I	CGATCG	1 cut(s)	29
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	19
PspFI	CCCAGC	2 cut(s)	488, 890
PspGI	CCWGG	1 cut(s)	19
PspN4I	GGNNCC	3 cut(s)	37, 385, 431
PspPI	GGNCC	2 cut(s)	145, 430
PstI	CTGCAG	2 cut(s)	264, 682
PstNI	CAGNNNCTG	1 cut(s)	268
PvuI	CGATCG	1 cut(s)	29
PvuII	CAGCTG	2 cut(s)	268, 788
RsaI	GTAC	3 cut(s)	287, 599, 869
RsaNI	GTAC	3 cut(s)	286, 598, 868
RseI	CAYNNNNRTG	1 cut(s)	395
Rsr2I	CGGWCCG	1 cut(s)	145
RsrII	CGGWCCG	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	595
SacII	CCGCGG	2 cut(s)	322, 906
SalI	GTCGAC	1 cut(s)	974
Sau3AI	GATC	3 cut(s)	26, 88, 955
Sau96I	GGNCC	2 cut(s)	145, 430
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	21, 409
SduI	GDGCHC	2 cut(s)	414, 595
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	3 cut(s)	260, 678, 861
Sfr303I	CCGCGG	2 cut(s)	322, 906
SgrBI	CCGCGG	2 cut(s)	322, 906
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	5 cut(s)	473, 499, 728, 924, 979
SspMI	CTAG	2 cut(s)	126, 660
SstI	GAGCTC	1 cut(s)	595
StyD4I	CCNGG	2 cut(s)	19, 407
StyI	CCWWGG	2 cut(s)	69, 390
TaaI	ACNGT	3 cut(s)	35, 149, 803
TaiI	ACGT	2 cut(s)	17, 248
TaqI	TCGA	5 cut(s)	25, 115, 161, 354, 975
TasI	AATT	5 cut(s)	473, 499, 728, 924, 979
TatI	WGTACW	2 cut(s)	285, 867
TauI	GCSGC	7 cut(s)	125, 227, 321, 377, 659, 905, 908
TfiI	GAWTC	1 cut(s)	637
TscAI	CASTG	1 cut(s)	500
TseFI	GTSAC	2 cut(s)	181, 797
TseI	GCWGC	7 cut(s)	166, 259, 262, 265, 467, 677, 785
Tsp45I	GTSAC	2 cut(s)	181, 797
TspDTI	ATGAA	3 cut(s)	17, 791, 869
TspGWI	ACGGA	2 cut(s)	158, 356
TspRI	CASTG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	728
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmiI	GTMKAC	1 cut(s)	975
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	2 cut(s)	126, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.