Rw7G041820

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004033
Physical Location & Seq
Reverse (-)
65397862 .. 65399770
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G041820.1

Sequence Viewer

Length: 939 bp
ATGAGGAAGCGAAGTCGATGGGAACGCCAGGAAACGACGGCGTTTCCGTTATTGAACACCAAGCAAGGAGGCGAACTCCATCACAAAATCTTCTGGAAAACCAGCAACCGATTCTCCACATCATCCCCAAGGGATTTCTCGGATCTTCCCCAAGAACTGGTAACCAAAATCGGTGCGTCGCTCAGCTACGGCAACCTAAAAGCGGCGTCGTTGGTGTGCAAGTCGTGGTGCGACGCGCTTCGGCCGGCGAGAAAGGCCATGAAGTACAAAGAATACGAGCGTTGGGGAAAGCAGTTCAAGCAAGGCCTCTGTGGTTTTCTACCTAATATACACAATGCTCTCAAGATGTTCTTGAAGGCTGCGGAGTACGGATCAACAAGGGCTATGGTACACGCCGGACTGATATATTGGAAGAGAGGCGAGAAAGACAAGGCCTGTGTTTTGTATCGGAGAGCTGCGGAGCTCGGAGACCGGAATGCGCAGTTCAATTTGGGACTTTCATATGTGCTAGTTCAACCTTCAAATCCAGAGGAAGCTATAAAGTGGTTATCTCTTGCTGCTTTTCAAGGCCATGCCGGAGCTCAATACCAACTTGCACATTGTCTGCGTCAGGGTGGGAACATGGAAGAAGCGGCCGGGTGGTGTTTGAGAGCCGCAGAAGGTGGTTATGTACGTGCTATGTATAATGTATCCATGTGCTACAAGTATGGGGAAGGGTTAGTTCAGTGTGATCACCAAGCAAGAAAGTGGATGAAGTTGGCAGCTGATTGTGGCCACAGTAAAGCTCAAACTTTATATTTGTTACTATTTTTAATATACGAGGATTCGTTTACATTGCATGTTCCATCTGCGGGGCTTGTATGTTTGTCGCATTTGAAATATGCGATGCAATTCGGTCCTCGCATATATGAATATGTGACACATATACATTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

312

Amino Acids

35.54

Weight (kDa)

9.44

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 225 - 259 3.6e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 480
AccB7I CCANNNNNTGG 1 cut(s) 157
AccII CGCG 1 cut(s) 236
AciI CCGC 6 cut(s) 203, 362, 458, 632, 654, 851
AclWI GGATC 2 cut(s) 150, 379
AcoI YGGCCR 3 cut(s) 242, 633, 772
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 4 cut(s) 266, 368, 390, 672
AfiI CCNNNNNNNGG 3 cut(s) 157, 202, 851
AgsI TTSAA 8 cut(s) 55, 298, 355, 487, 515, 522, 566, 877
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 7 cut(s) 186, 455, 463, 536, 581, 764, 785
AluI AGCT 7 cut(s) 186, 455, 463, 536, 581, 764, 785
Alw21I GWGCWC 2 cut(s) 465, 583
Alw26I GTCTC 1 cut(s) 462
AlwI GGATC 2 cut(s) 150, 379
AoxI GGCC 7 cut(s) 242, 255, 304, 432, 568, 633, 772
ApeKI GCWGC 4 cut(s) 359, 455, 557, 761
AspLEI GCGC 2 cut(s) 238, 481
AspS9I GGNCC 1 cut(s) 896
AsuC2I CCSGG 1 cut(s) 637
AsuHPI GGTGA 1 cut(s) 725
AvaII GGWCC 1 cut(s) 896
BalI TGGCCA 1 cut(s) 774
BanII GRGCYC 2 cut(s) 465, 583
Bbv12I GWGCWC 2 cut(s) 465, 583
BbvI GCAGC 4 cut(s) 346, 442, 544, 773
BccI CCATC 3 cut(s) 12, 87, 853
BceAI ACGGC 2 cut(s) 54, 205
BciT130I CCWGG 1 cut(s) 29
BciVI GTATCC 1 cut(s) 700
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 462
BfaI CTAG 1 cut(s) 509
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 7 cut(s) 204, 360, 456, 558, 633, 654, 762
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 7 cut(s) 205, 361, 457, 559, 634, 655, 763
Bme1390I CCNGG 2 cut(s) 29, 637
Bme18I GGWCC 1 cut(s) 896
BmgT120I GGNCC 1 cut(s) 896
BmrFI CCNGG 2 cut(s) 29, 637
BmsI GCATC 1 cut(s) 876
BplI GAGNNNNNCTC 2 cut(s) 60, 92
Bpu1102I GCTNAGC 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 637
BsaAI YACGTR 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 202, 851
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 833
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 122, 756
BseLI CCNNNNNNNGG 3 cut(s) 157, 202, 851
BseMI GCAATG 1 cut(s) 833
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 162
BseX3I CGGCCG 2 cut(s) 242, 633
BseXI GCAGC 4 cut(s) 346, 442, 544, 773
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 2 cut(s) 245, 636
BshFI GGCC 7 cut(s) 244, 257, 306, 434, 570, 635, 774
BsiEI CGRYCG 2 cut(s) 245, 636
BsiHKAI GWGCWC 2 cut(s) 465, 583
BsiSI CCGG 5 cut(s) 245, 396, 472, 576, 636
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 3 cut(s) 157, 202, 851
BsmAI GTCTC 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 7 cut(s) 244, 257, 306, 434, 570, 635, 774
Bso31I GGTCTC 1 cut(s) 462
Bsp1286I GDGCHC 2 cut(s) 465, 583
Bsp143I GATC 3 cut(s) 142, 371, 730
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 6 cut(s) 203, 362, 458, 632, 654, 851
BspANI GGCC 7 cut(s) 244, 257, 306, 434, 570, 635, 774
BspCNI CTCAG 1 cut(s) 195
BspFNI CGCG 1 cut(s) 236
BspPI GGATC 2 cut(s) 150, 379
BspTNI GGTCTC 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 833
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 3 cut(s) 142, 371, 730
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 182
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 2 cut(s) 122, 756
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 2 cut(s) 238, 481
BstKTI GATC 3 cut(s) 145, 374, 733
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 3 cut(s) 142, 371, 730
BstMCI CGRYCG 2 cut(s) 245, 636
BstMWI GCNNNNNNNGC 2 cut(s) 254, 298
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 842
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 27, 635
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 4 cut(s) 346, 442, 544, 773
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BstZI CGGCCG 2 cut(s) 242, 633
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 7 cut(s) 244, 257, 306, 434, 570, 635, 774
BtgZI GCGATG 1 cut(s) 899
BtsCI GGATG 2 cut(s) 122, 756
BtsIMutI CAGTG 1 cut(s) 731
Cac8I GCNNGC 1 cut(s) 246
CfoI GCGC 2 cut(s) 238, 481
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 896
CseI GACGC 4 cut(s) 165, 195, 242, 596
Csp6I GTAC 4 cut(s) 265, 367, 389, 671
CviAII CATG 5 cut(s) 259, 572, 622, 694, 839
CviQI GTAC 4 cut(s) 265, 367, 389, 671
DdeI CTNAG 1 cut(s) 182
DpnI GATC 3 cut(s) 144, 373, 732
DpnII GATC 3 cut(s) 142, 371, 730
EaeI YGGCCR 3 cut(s) 242, 633, 772
EagI CGGCCG 2 cut(s) 242, 633
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Ecl136II GAGCTC 2 cut(s) 463, 581
EclXI CGGCCG 2 cut(s) 242, 633
Eco130I CCWWGG 1 cut(s) 128
Eco147I AGGCCT 2 cut(s) 306, 434
Eco24I GRGCYC 2 cut(s) 465, 583
Eco31I GGTCTC 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 896
Eco52I CGGCCG 2 cut(s) 242, 633
Eco53kI GAGCTC 2 cut(s) 463, 581
Eco91I GGTNACC 1 cut(s) 160
EcoICRI GAGCTC 2 cut(s) 463, 581
EcoO65I GGTNACC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 128
EcoT38I GRGCYC 2 cut(s) 465, 583
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 5 cut(s) 262, 575, 625, 697, 842
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FaqI GGGAC 1 cut(s) 507
FatI CATG 5 cut(s) 258, 571, 621, 693, 838
FauI CCCGC 1 cut(s) 844
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 7 cut(s) 204, 360, 456, 558, 633, 654, 762
FokI GGATG 2 cut(s) 109, 763
FriOI GRGCYC 2 cut(s) 465, 583
Fsp4HI GCNGC 7 cut(s) 204, 360, 456, 558, 633, 654, 762
FspBI CTAG 1 cut(s) 509
FspI TGCGCA 1 cut(s) 480
GlaI GCGC 2 cut(s) 237, 480
GluI GCNGC 7 cut(s) 204, 360, 456, 558, 633, 654, 762
HaeIII GGCC 7 cut(s) 244, 257, 306, 434, 570, 635, 774
HapII CCGG 5 cut(s) 245, 396, 472, 576, 636
HgaI GACGC 4 cut(s) 165, 195, 242, 596
HhaI GCGC 2 cut(s) 238, 481
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 5 cut(s) 262, 575, 625, 697, 842
Hin6I GCGC 2 cut(s) 236, 479
HinP1I GCGC 2 cut(s) 236, 479
HinfI GANTC 2 cut(s) 111, 824
HpaII CCGG 5 cut(s) 245, 396, 472, 576, 636
HphI GGTGA 1 cut(s) 725
Hpy166II GTNNAC 2 cut(s) 391, 831
Hpy188I TCNGA 3 cut(s) 142, 450, 467
Hpy188III TCNNGA 4 cut(s) 94, 343, 352, 527
Hpy8I GTNNAC 2 cut(s) 391, 831
Hpy99I CGWCG 4 cut(s) 40, 181, 211, 236
HpyAV CCTTC 4 cut(s) 349, 528, 653, 707
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 4 cut(s) 219, 596, 838, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 298
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 673
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 5 cut(s) 262, 575, 625, 697, 842
HspAI GCGC 2 cut(s) 236, 479
KroI GCCGGC 1 cut(s) 244
KroNI GCCGGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 3 cut(s) 142, 371, 730
LmnI GCTCC 2 cut(s) 460, 578
Lsp1109I GCAGC 4 cut(s) 346, 442, 544, 773
LweI GCATC 1 cut(s) 876
MaeI CTAG 1 cut(s) 509
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 3 cut(s) 160, 801, 916
MalI GATC 3 cut(s) 144, 373, 732
MboI GATC 3 cut(s) 142, 371, 730
MboII GAAGA 4 cut(s) 82, 137, 424, 638
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 2 cut(s) 465, 583
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 2 cut(s) 487, 890
MluNI TGGCCA 1 cut(s) 774
MnlI CCTC 6 cut(s) 62, 317, 410, 523, 814, 909
Mox20I TGGCCA 1 cut(s) 774
MroNI GCCGGC 1 cut(s) 244
MscI TGGCCA 1 cut(s) 774
MseI TTAA 1 cut(s) 812
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 5 cut(s) 245, 396, 472, 576, 636
MspR9I CCNGG 2 cut(s) 29, 637
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 254, 298
NaeI GCCGGC 1 cut(s) 246
NciI CCSGG 1 cut(s) 637
NdeI CATATG 1 cut(s) 502
NdeII GATC 3 cut(s) 142, 371, 730
NgoMIV GCCGGC 1 cut(s) 244
NlaIII CATG 5 cut(s) 262, 575, 625, 697, 842
NmuCI GTSAC 1 cut(s) 916
NsbI TGCGCA 1 cut(s) 480
NspI RCATGY 1 cut(s) 842
PceI AGGCCT 2 cut(s) 306, 434
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 1 cut(s) 481
PdiI GCCGGC 1 cut(s) 246
PfeI GAWTC 2 cut(s) 111, 824
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 7 cut(s) 205, 361, 457, 559, 634, 655, 763
Ppu21I YACGTR 1 cut(s) 674
Psp124BI GAGCTC 2 cut(s) 465, 583
Psp6I CCWGG 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 160
PspGI CCWGG 1 cut(s) 27
PspPI GGNCC 1 cut(s) 896
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 4 cut(s) 266, 368, 390, 672
RsaNI GTAC 4 cut(s) 265, 367, 389, 671
SacI GAGCTC 2 cut(s) 465, 583
SaqAI TTAA 1 cut(s) 812
SatI GCNGC 7 cut(s) 204, 360, 456, 558, 633, 654, 762
Sau3AI GATC 3 cut(s) 142, 371, 730
Sau96I GGNCC 1 cut(s) 896
ScrFI CCNGG 2 cut(s) 29, 637
SduI GDGCHC 2 cut(s) 465, 583
SfaNI GCATC 1 cut(s) 876
SinI GGWCC 1 cut(s) 896
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 487, 890
SseBI AGGCCT 2 cut(s) 306, 434
SsiI CCGC 6 cut(s) 203, 362, 458, 632, 654, 851
SspMI CTAG 1 cut(s) 509
SstI GAGCTC 2 cut(s) 465, 583
StuI AGGCCT 2 cut(s) 306, 434
StyD4I CCNGG 2 cut(s) 27, 635
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 779
TaiI ACGT 1 cut(s) 676
TaqI TCGA 1 cut(s) 16
TaqII GACCGA 1 cut(s) 884
TasI AATT 2 cut(s) 487, 890
TatI WGTACW 1 cut(s) 264
TauI GCSGC 3 cut(s) 206, 635, 656
TfiI GAWTC 2 cut(s) 111, 824
Tru1I TTAA 1 cut(s) 812
Tru9I TTAA 1 cut(s) 812
TscAI CASTG 1 cut(s) 731
TseFI GTSAC 1 cut(s) 916
TseI GCWGC 4 cut(s) 359, 455, 557, 761
Tsp45I GTSAC 1 cut(s) 916
TspDTI ATGAA 4 cut(s) 275, 489, 767, 924
TspGWI ACGGA 2 cut(s) 36, 384
TspRI CASTG 1 cut(s) 731
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 896
XceI RCATGY 1 cut(s) 842
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.