f-box protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G70590 |
| fragaria_vesca | FvH4_4g05690 FvH4_4g25470 |
| malus_domestica | MD13G1102600.v1.1 |
| prunus_persica | Prupe.1G243200_v2.0.a1 |
| pyrus_communis | pycom13g08970 |
| rosa_chinensis | RchiOBHm_Chr1g0318701 RchiOBHm_Chr4g0432791 RchiOBHm_Chr4g0436601 RchiOBHm_Chr7g0240871 |
| rosa_laevigata | RLG00000000615 RLG00000006811 RLG00000009495 |
| rosa_multiflora | Rmu_sc0002313.1_g000016 Rmu_sc0005234.1_g000002 Rmu_sc0012180.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00219440 Rroxscaffold_5G00341770 Rroxscaffold_5G00374240 |
| rosa_rugosa | Rorug03G0346700 Rorug04G0262900 Rorug04G0263000 Rorug07G0339800 |
| rosa_samantha | Rh4AG317000 Rh4BG325300 Rh4DG320400 Rh6DG077200 Rh7AG494400 Rh7BG466100 Rh7CG512600 Rh7DG479400 |
| rosa_wichuraiana | Rw4G027580 Rw7G041820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 498 |
| Acc65I | GGTACC | 1 cut(s) | 213 |
| AccB1I | GGYRCC | 2 cut(s) | 213, 323 |
| AccI | GTMKAC | 2 cut(s) | 348, 408 |
| AccII | CGCG | 4 cut(s) | 159, 330, 936, 958 |
| AccIII | TCCGGA | 1 cut(s) | 178 |
| AclWI | GGATC | 2 cut(s) | 24, 177 |
| AcoI | YGGCCR | 5 cut(s) | 20, 269, 378, 663, 802 |
| AcyI | GRCGYC | 3 cut(s) | 233, 324, 411 |
| AfaI | GTAC | 5 cut(s) | 215, 293, 464, 875, 994 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 229, 448, 489, 897, 898 |
| AflII | CTTAAG | 1 cut(s) | 920 |
| AflIII | ACRYGT | 1 cut(s) | 589 |
| AgsI | TTSAA | 3 cut(s) | 316, 373, 533 |
| AjiI | CACGTC | 2 cut(s) | 132, 144 |
| AjnI | CCWGG | 1 cut(s) | 665 |
| Alw21I | GWGCWC | 1 cut(s) | 601 |
| Alw26I | GTCTC | 1 cut(s) | 212 |
| AlwI | GGATC | 2 cut(s) | 24, 177 |
| Ama87I | CYCGRG | 2 cut(s) | 209, 891 |
| Aor13HI | TCCGGA | 1 cut(s) | 178 |
| AoxI | GGCC | 8 cut(s) | 20, 51, 269, 282, 378, 480, 663, 802 |
| ApeKI | GCWGC | 3 cut(s) | 473, 683, 791 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 311 |
| Asp718I | GGTACC | 1 cut(s) | 213 |
| AspLEI | GCGC | 3 cut(s) | 265, 326, 499 |
| AspS9I | GGNCC | 1 cut(s) | 151 |
| AsuC2I | CCSGG | 1 cut(s) | 443 |
| AsuHPI | GGTGA | 3 cut(s) | 497, 863, 939 |
| AvaI | CYCGRG | 2 cut(s) | 209, 891 |
| AvaII | GGWCC | 1 cut(s) | 151 |
| BalI | TGGCCA | 2 cut(s) | 22, 804 |
| BanI | GGYRCC | 2 cut(s) | 213, 323 |
| BanII | GRGCYC | 1 cut(s) | 601 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 985 |
| BbsI | GAAGAC | 1 cut(s) | 919 |
| Bbv12I | GWGCWC | 1 cut(s) | 601 |
| BbvI | GCAGC | 3 cut(s) | 460, 670, 803 |
| BccI | CCATC | 1 cut(s) | 781 |
| BceAI | ACGGC | 6 cut(s) | 52, 66, 91, 246, 337, 354 |
| BciT130I | CCWGG | 1 cut(s) | 667 |
| BcnI | CCSGG | 1 cut(s) | 443 |
| BcoDI | GTCTC | 1 cut(s) | 212 |
| BfmI | CTRYAG | 1 cut(s) | 684 |
| BfoI | RGCGCY | 2 cut(s) | 266, 327 |
| BfrI | CTTAAG | 1 cut(s) | 920 |
| BisI | GCNGC | 7 cut(s) | 97, 157, 378, 474, 663, 684, 792 |
| BlsI | GCNGC | 7 cut(s) | 98, 158, 379, 475, 664, 685, 793 |
| Bme1390I | CCNGG | 2 cut(s) | 443, 667 |
| Bme18I | GGWCC | 1 cut(s) | 151 |
| BmeT110I | CYCGRG | 2 cut(s) | 209, 891 |
| BmgBI | CACGTC | 2 cut(s) | 132, 144 |
| BmgT120I | GGNCC | 1 cut(s) | 151 |
| BmiI | GGNNCC | 3 cut(s) | 215, 325, 391 |
| BmrFI | CCNGG | 2 cut(s) | 443, 667 |
| BpiI | GAAGAC | 1 cut(s) | 919 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 374, 406 |
| BpuEI | CTTGAG | 2 cut(s) | 307, 344 |
| BpuMI | CCSGG | 1 cut(s) | 443 |
| BsaHI | GRCGYC | 3 cut(s) | 233, 324, 411 |
| BsaJI | CCNNGG | 2 cut(s) | 300, 328 |
| BsaWI | WCCGGW | 3 cut(s) | 178, 465, 489 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 229, 448, 489, 897, 898 |
| Bse118I | RCCGGY | 2 cut(s) | 271, 482 |
| Bse1I | ACTGG | 1 cut(s) | 153 |
| BseAI | TCCGGA | 1 cut(s) | 178 |
| BseBI | CCWGG | 1 cut(s) | 667 |
| BseDI | CCNNGG | 2 cut(s) | 300, 328 |
| BseGI | GGATG | 3 cut(s) | 134, 786, 931 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 229, 448, 489, 897, 898 |
| BseNI | ACTGG | 1 cut(s) | 153 |
| BseX3I | CGGCCG | 2 cut(s) | 269, 378 |
| BseXI | GCAGC | 3 cut(s) | 460, 670, 803 |
| BseYI | CCCAGC | 1 cut(s) | 896 |
| BsgI | GTGCAG | 1 cut(s) | 773 |
| Bsh1236I | CGCG | 4 cut(s) | 159, 330, 936, 958 |
| Bsh1285I | CGRYCG | 3 cut(s) | 272, 381, 442 |
| BshFI | GGCC | 8 cut(s) | 22, 53, 271, 284, 380, 482, 665, 804 |
| BshNI | GGYRCC | 2 cut(s) | 213, 323 |
| BsiEI | CGRYCG | 3 cut(s) | 272, 381, 442 |
| BsiHKAI | GWGCWC | 1 cut(s) | 601 |
| BsiHKCI | CYCGRG | 2 cut(s) | 209, 891 |
| BsiSI | CCGG | 8 cut(s) | 179, 268, 272, 414, 442, 466, 483, 490 |
| BslFI | GGGAC | 1 cut(s) | 600 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 229, 448, 489, 897, 898 |
| BsmAI | GTCTC | 1 cut(s) | 212 |
| BsmFI | GGGAC | 1 cut(s) | 600 |
| BsmI | GAATGC | 1 cut(s) | 499 |
| BsnI | GGCC | 8 cut(s) | 22, 53, 271, 284, 380, 482, 665, 804 |
| BsoBI | CYCGRG | 2 cut(s) | 209, 891 |
| Bsp1286I | GDGCHC | 1 cut(s) | 601 |
| Bsp13I | TCCGGA | 1 cut(s) | 178 |
| Bsp143I | GATC | 4 cut(s) | 29, 169, 643, 796 |
| Bsp68I | TCGCGA | 1 cut(s) | 936 |
| BspANI | GGCC | 8 cut(s) | 22, 53, 271, 284, 380, 482, 665, 804 |
| BspEI | TCCGGA | 1 cut(s) | 178 |
| BspFNI | CGCG | 4 cut(s) | 159, 330, 936, 958 |
| BspHI | TCATGA | 1 cut(s) | 763 |
| BspLI | GGNNCC | 3 cut(s) | 215, 325, 391 |
| BspMAI | CTGCAG | 1 cut(s) | 688 |
| BspPI | GGATC | 2 cut(s) | 24, 177 |
| BspT107I | GGYRCC | 2 cut(s) | 213, 323 |
| BspTI | CTTAAG | 1 cut(s) | 920 |
| BsrFI | RCCGGY | 2 cut(s) | 271, 482 |
| BsrI | ACTGG | 1 cut(s) | 153 |
| BssAI | RCCGGY | 2 cut(s) | 271, 482 |
| BssECI | CCNNGG | 2 cut(s) | 300, 328 |
| BssMI | GATC | 4 cut(s) | 29, 169, 643, 796 |
| BssNI | GRCGYC | 3 cut(s) | 233, 324, 411 |
| BssT1I | CCWWGG | 1 cut(s) | 300 |
| Bst2UI | CCWGG | 1 cut(s) | 667 |
| Bst4CI | ACNGT | 1 cut(s) | 726 |
| BstACI | GRCGYC | 3 cut(s) | 233, 324, 411 |
| BstAFI | CTTAAG | 1 cut(s) | 920 |
| BstC8I | GCNNGC | 5 cut(s) | 8, 273, 328, 343, 705 |
| BstDEI | CTNAG | 1 cut(s) | 396 |
| BstDSI | CCRYGG | 1 cut(s) | 328 |
| BstEII | GGTNACC | 1 cut(s) | 485 |
| BstF5I | GGATG | 3 cut(s) | 134, 786, 931 |
| BstFNI | CGCG | 4 cut(s) | 159, 330, 936, 958 |
| BstH2I | RGCGCY | 2 cut(s) | 266, 327 |
| BstHHI | GCGC | 3 cut(s) | 265, 326, 499 |
| BstKTI | GATC | 4 cut(s) | 32, 172, 646, 799 |
| BstMAI | GTCTC | 1 cut(s) | 212 |
| BstMBI | GATC | 4 cut(s) | 29, 169, 643, 796 |
| BstMCI | CGRYCG | 3 cut(s) | 272, 381, 442 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 84, 93, 281, 316, 479, 893 |
| BstNI | CCWGG | 1 cut(s) | 667 |
| BstNSI | RCATGY | 2 cut(s) | 593, 625 |
| BstPI | GGTNACC | 1 cut(s) | 485 |
| BstSCI | CCNGG | 2 cut(s) | 441, 665 |
| BstSFI | CTRYAG | 1 cut(s) | 684 |
| BstUI | CGCG | 4 cut(s) | 159, 330, 936, 958 |
| BstV1I | GCAGC | 3 cut(s) | 460, 670, 803 |
| BstV2I | GAAGAC | 1 cut(s) | 919 |
| BstX2I | RGATCY | 1 cut(s) | 169 |
| BstYI | RGATCY | 1 cut(s) | 169 |
| BstZI | CGGCCG | 2 cut(s) | 269, 378 |
| BsuRI | GGCC | 8 cut(s) | 22, 53, 271, 284, 380, 482, 665, 804 |
| BtgI | CCRYGG | 1 cut(s) | 328 |
| BtrI | CACGTC | 2 cut(s) | 132, 144 |
| BtsCI | GGATG | 3 cut(s) | 134, 786, 931 |
| BtsI | GCAGTG | 1 cut(s) | 506 |
| BtsIMutI | CAGTG | 3 cut(s) | 146, 506, 722 |
| BtuMI | TCGCGA | 1 cut(s) | 936 |
| Cac8I | GCNNGC | 5 cut(s) | 8, 273, 328, 343, 705 |
| CciI | TCATGA | 1 cut(s) | 763 |
| CfoI | GCGC | 3 cut(s) | 265, 326, 499 |
| Cfr10I | RCCGGY | 2 cut(s) | 271, 482 |
| Cfr13I | GGNCC | 1 cut(s) | 151 |
| Cfr42I | CCGCGG | 1 cut(s) | 331 |
| CseI | GACGC | 3 cut(s) | 222, 334, 419 |
| Csp6I | GTAC | 5 cut(s) | 214, 292, 463, 874, 993 |
| CviAII | CATG | 8 cut(s) | 18, 590, 622, 652, 692, 764, 827, 970 |
| CviQI | GTAC | 5 cut(s) | 214, 292, 463, 874, 993 |
| DdeI | CTNAG | 1 cut(s) | 396 |
| DinI | GGCGCC | 1 cut(s) | 325 |
| DpnI | GATC | 4 cut(s) | 31, 171, 645, 798 |
| DpnII | GATC | 4 cut(s) | 29, 169, 643, 796 |
| EaeI | YGGCCR | 5 cut(s) | 20, 269, 378, 663, 802 |
| EagI | CGGCCG | 2 cut(s) | 269, 378 |
| EciI | GGCGGA | 1 cut(s) | 93 |
| Ecl136II | GAGCTC | 1 cut(s) | 599 |
| EclXI | CGGCCG | 2 cut(s) | 269, 378 |
| Eco130I | CCWWGG | 1 cut(s) | 300 |
| Eco147I | AGGCCT | 1 cut(s) | 284 |
| Eco24I | GRGCYC | 1 cut(s) | 601 |
| Eco47I | GGWCC | 1 cut(s) | 151 |
| Eco52I | CGGCCG | 2 cut(s) | 269, 378 |
| Eco53kI | GAGCTC | 1 cut(s) | 599 |
| Eco88I | CYCGRG | 2 cut(s) | 209, 891 |
| Eco91I | GGTNACC | 1 cut(s) | 485 |
| EcoICRI | GAGCTC | 1 cut(s) | 599 |
| EcoO65I | GGTNACC | 1 cut(s) | 485 |
| EcoRII | CCWGG | 1 cut(s) | 665 |
| EcoT14I | CCWWGG | 1 cut(s) | 300 |
| EcoT38I | GRGCYC | 1 cut(s) | 601 |
| EgeI | GGCGCC | 1 cut(s) | 325 |
| EheI | GGCGCC | 1 cut(s) | 325 |
| ErhI | CCWWGG | 1 cut(s) | 300 |
| FaeI | CATG | 8 cut(s) | 21, 593, 625, 655, 695, 767, 830, 973 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 353, 385 |
| FaqI | GGGAC | 1 cut(s) | 600 |
| FatI | CATG | 8 cut(s) | 17, 589, 621, 651, 691, 763, 826, 969 |
| FauI | CCCGC | 1 cut(s) | 335 |
| FblI | GTMKAC | 2 cut(s) | 348, 408 |
| Fnu4HI | GCNGC | 7 cut(s) | 97, 157, 378, 474, 663, 684, 792 |
| FokI | GGATG | 3 cut(s) | 121, 793, 938 |
| FriOI | GRGCYC | 1 cut(s) | 601 |
| Fsp4HI | GCNGC | 7 cut(s) | 97, 157, 378, 474, 663, 684, 792 |
| FspI | TGCGCA | 1 cut(s) | 498 |
| GlaI | GCGC | 3 cut(s) | 264, 325, 498 |
| GluI | GCNGC | 7 cut(s) | 97, 157, 378, 474, 663, 684, 792 |
| GsaI | CCCAGC | 1 cut(s) | 900 |
| HaeII | RGCGCY | 2 cut(s) | 266, 327 |
| HaeIII | GGCC | 8 cut(s) | 22, 53, 271, 284, 380, 482, 665, 804 |
| HapII | CCGG | 8 cut(s) | 179, 268, 272, 414, 442, 466, 483, 490 |
| HgaI | GACGC | 3 cut(s) | 222, 334, 419 |
| HhaI | GCGC | 3 cut(s) | 265, 326, 499 |
| Hin1I | GRCGYC | 3 cut(s) | 233, 324, 411 |
| Hin1II | CATG | 8 cut(s) | 21, 593, 625, 655, 695, 767, 830, 973 |
| Hin6I | GCGC | 3 cut(s) | 263, 324, 497 |
| HinP1I | GCGC | 3 cut(s) | 263, 324, 497 |
| HincII | GTYRAC | 2 cut(s) | 349, 409 |
| HindII | GTYRAC | 2 cut(s) | 349, 409 |
| HinfI | GANTC | 3 cut(s) | 195, 201, 757 |
| HpaII | CCGG | 8 cut(s) | 179, 268, 272, 414, 442, 466, 483, 490 |
| HphI | GGTGA | 3 cut(s) | 497, 863, 939 |
| Hpy166II | GTNNAC | 3 cut(s) | 349, 409, 874 |
| Hpy188I | TCNGA | 4 cut(s) | 169, 200, 596, 847 |
| Hpy188III | TCNNGA | 6 cut(s) | 179, 361, 370, 764, 935, 1011 |
| Hpy8I | GTNNAC | 3 cut(s) | 349, 409, 874 |
| Hpy99I | CGWCG | 3 cut(s) | 238, 350, 413 |
| HpyAV | CCTTC | 6 cut(s) | 148, 367, 463, 737, 842, 1011 |
| HpyCH4III | ACNGT | 1 cut(s) | 726 |
| HpyCH4IV | ACGT | 2 cut(s) | 131, 143 |
| HpyCH4V | TGCA | 7 cut(s) | 246, 504, 526, 621, 686, 754, 887 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 84, 93, 281, 316, 479, 893 |
| HpyF3I | CTNAG | 1 cut(s) | 396 |
| HpySE526I | ACGT | 2 cut(s) | 131, 143 |
| Hsp92I | GRCGYC | 3 cut(s) | 233, 324, 411 |
| Hsp92II | CATG | 8 cut(s) | 21, 593, 625, 655, 695, 767, 830, 973 |
| HspAI | GCGC | 3 cut(s) | 263, 324, 497 |
| KasI | GGCGCC | 1 cut(s) | 323 |
| Kpn2I | TCCGGA | 1 cut(s) | 178 |
| KpnI | GGTACC | 1 cut(s) | 217 |
| KroI | GCCGGC | 1 cut(s) | 271 |
| KroNI | GCCGGC | 1 cut(s) | 273 |
| KspI | CCGCGG | 1 cut(s) | 331 |
| Kzo9I | GATC | 4 cut(s) | 29, 169, 643, 796 |
| LmnI | GCTCC | 4 cut(s) | 131, 181, 270, 395 |
| Lsp1109I | GCAGC | 3 cut(s) | 460, 670, 803 |
| MaeII | ACGT | 2 cut(s) | 131, 143 |
| MaeIII | GTNAC | 4 cut(s) | 60, 144, 485, 647 |
| MalI | GATC | 4 cut(s) | 31, 171, 645, 798 |
| MboI | GATC | 4 cut(s) | 29, 169, 643, 796 |
| MboII | GAAGA | 3 cut(s) | 796, 924, 999 |
| MflI | RGATCY | 1 cut(s) | 169 |
| MhlI | GDGCHC | 1 cut(s) | 601 |
| MlsI | TGGCCA | 2 cut(s) | 22, 804 |
| MluCI | AATT | 2 cut(s) | 505, 930 |
| MluNI | TGGCCA | 2 cut(s) | 22, 804 |
| Mly113I | GGCGCC | 1 cut(s) | 324 |
| MlyI | GAGTC | 1 cut(s) | 766 |
| MmeI | TCCRAC | 1 cut(s) | 57 |
| Mox20I | TGGCCA | 2 cut(s) | 22, 804 |
| MroI | TCCGGA | 1 cut(s) | 178 |
| MroNI | GCCGGC | 1 cut(s) | 271 |
| MroXI | GAANNNNTTC | 1 cut(s) | 311 |
| MscI | TGGCCA | 2 cut(s) | 22, 804 |
| MseI | TTAA | 1 cut(s) | 921 |
| MslI | CAYNNNNRTG | 1 cut(s) | 696 |
| Msp20I | TGGCCA | 2 cut(s) | 22, 804 |
| MspA1I | CMGCKG | 2 cut(s) | 330, 794 |
| MspCI | CTTAAG | 1 cut(s) | 920 |
| MspI | CCGG | 8 cut(s) | 179, 268, 272, 414, 442, 466, 483, 490 |
| MspR9I | CCNGG | 2 cut(s) | 443, 667 |
| Mva1269I | GAATGC | 1 cut(s) | 499 |
| MvaI | CCWGG | 1 cut(s) | 667 |
| MvnI | CGCG | 4 cut(s) | 159, 330, 936, 958 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 84, 93, 281, 316, 479, 893 |
| NaeI | GCCGGC | 1 cut(s) | 273 |
| NarI | GGCGCC | 1 cut(s) | 324 |
| NciI | CCSGG | 1 cut(s) | 443 |
| NdeII | GATC | 4 cut(s) | 29, 169, 643, 796 |
| NgoMIV | GCCGGC | 1 cut(s) | 271 |
| NlaIII | CATG | 8 cut(s) | 21, 593, 625, 655, 695, 767, 830, 973 |
| NlaIV | GGNNCC | 3 cut(s) | 215, 325, 391 |
| NmeAIII | GCCGAG | 1 cut(s) | 406 |
| NmuCI | GTSAC | 2 cut(s) | 144, 485 |
| NruI | TCGCGA | 1 cut(s) | 936 |
| NsbI | TGCGCA | 1 cut(s) | 498 |
| NspI | RCATGY | 2 cut(s) | 593, 625 |
| PagI | TCATGA | 1 cut(s) | 763 |
| PceI | AGGCCT | 1 cut(s) | 284 |
| PciI | ACATGT | 1 cut(s) | 589 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 56 |
| PctI | GAATGC | 1 cut(s) | 499 |
| PdiI | GCCGGC | 1 cut(s) | 273 |
| PdmI | GAANNNNTTC | 1 cut(s) | 311 |
| PfeI | GAWTC | 2 cut(s) | 195, 201 |
| PkrI | GCNGC | 7 cut(s) | 98, 158, 379, 475, 664, 685, 793 |
| PleI | GAGTC | 1 cut(s) | 765 |
| PluTI | GGCGCC | 1 cut(s) | 327 |
| PpsI | GAGTC | 1 cut(s) | 765 |
| PscI | ACATGT | 1 cut(s) | 589 |
| Psp124BI | GAGCTC | 1 cut(s) | 601 |
| Psp6I | CCWGG | 1 cut(s) | 665 |
| PspEI | GGTNACC | 1 cut(s) | 485 |
| PspFI | CCCAGC | 1 cut(s) | 896 |
| PspGI | CCWGG | 1 cut(s) | 665 |
| PspN4I | GGNNCC | 3 cut(s) | 215, 325, 391 |
| PspPI | GGNCC | 1 cut(s) | 151 |
| PstI | CTGCAG | 1 cut(s) | 688 |
| PsuI | RGATCY | 1 cut(s) | 169 |
| PvuII | CAGCTG | 1 cut(s) | 794 |
| RruI | TCGCGA | 1 cut(s) | 936 |
| RsaI | GTAC | 5 cut(s) | 215, 293, 464, 875, 994 |
| RsaNI | GTAC | 5 cut(s) | 214, 292, 463, 874, 993 |
| RseI | CAYNNNNRTG | 1 cut(s) | 696 |
| SacI | GAGCTC | 1 cut(s) | 601 |
| SacII | CCGCGG | 1 cut(s) | 331 |
| SalI | GTCGAC | 2 cut(s) | 347, 407 |
| SaqAI | TTAA | 1 cut(s) | 921 |
| SatI | GCNGC | 7 cut(s) | 97, 157, 378, 474, 663, 684, 792 |
| Sau3AI | GATC | 4 cut(s) | 29, 169, 643, 796 |
| Sau96I | GGNCC | 1 cut(s) | 151 |
| SchI | GAGTC | 1 cut(s) | 766 |
| ScrFI | CCNGG | 2 cut(s) | 443, 667 |
| SduI | GDGCHC | 1 cut(s) | 601 |
| SfcI | CTRYAG | 1 cut(s) | 684 |
| SfoI | GGCGCC | 1 cut(s) | 325 |
| Sfr303I | CCGCGG | 1 cut(s) | 331 |
| SgrBI | CCGCGG | 1 cut(s) | 331 |
| SinI | GGWCC | 1 cut(s) | 151 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 696 |
| SmlI | CTYRAG | 3 cut(s) | 286, 359, 920 |
| SmoI | CTYRAG | 3 cut(s) | 286, 359, 920 |
| Sse9I | AATT | 2 cut(s) | 505, 930 |
| SseBI | AGGCCT | 1 cut(s) | 284 |
| SspDI | GGCGCC | 1 cut(s) | 323 |
| SstI | GAGCTC | 1 cut(s) | 601 |
| StuI | AGGCCT | 1 cut(s) | 284 |
| StyD4I | CCNGG | 2 cut(s) | 441, 665 |
| StyI | CCWWGG | 1 cut(s) | 300 |
| TaaI | ACNGT | 1 cut(s) | 726 |
| TaiI | ACGT | 2 cut(s) | 134, 146 |
| TaqI | TCGA | 4 cut(s) | 28, 225, 348, 408 |
| TasI | AATT | 2 cut(s) | 505, 930 |
| TatI | WGTACW | 1 cut(s) | 873 |
| TauI | GCSGC | 4 cut(s) | 99, 159, 380, 665 |
| TfiI | GAWTC | 2 cut(s) | 195, 201 |
| Tru1I | TTAA | 1 cut(s) | 921 |
| Tru9I | TTAA | 1 cut(s) | 921 |
| TscAI | CASTG | 3 cut(s) | 153, 506, 729 |
| TseFI | GTSAC | 2 cut(s) | 144, 485 |
| TseI | GCWGC | 3 cut(s) | 473, 683, 791 |
| Tsp45I | GTSAC | 2 cut(s) | 144, 485 |
| TspDTI | ATGAA | 4 cut(s) | 668, 780, 797, 993 |
| TspGWI | ACGGA | 1 cut(s) | 48 |
| TspRI | CASTG | 3 cut(s) | 153, 506, 729 |
| Vha464I | CTTAAG | 1 cut(s) | 920 |
| VpaK11BI | GGWCC | 1 cut(s) | 151 |
| XceI | RCATGY | 2 cut(s) | 593, 625 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 400, 976 |
| XmiI | GTMKAC | 2 cut(s) | 348, 408 |
| XmnI | GAANNNNTTC | 1 cut(s) | 311 |