RchiOBHm_Chr4g0432791

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004033
Physical Location & Seq
Forward (+)
56857822 .. 56860422
2601 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40136

Sequence Viewer

Length: 1011 bp
ATGAGCAAGCAGACGACATGCCCAGCTCGATCCGACGGCTCTCGTTTCACGGCCTTGCCCTTACTCAAAACCAACGGCGGACGAAGCCGCCACCACAAGAGCAGCTTCTGGAAGCACAGCACCCGTACAGAGTCCACGTCATCCTCCTCACGCTATGATTTCTCGGATCTGCCTCAGGAACTGGTAGCCAAAATCGGGGCCTCTCTCAGCTACCACAGCCTCAAAACGGCGTCGTTGGTCTGCAGGTCGTGGTGCGAGGCCCTCCGGCCGGCCAGGGAGGCCACGAAGTTCTTGACTTGGGGGAAGCAGTTCAAGCACGGCCGCGGCGATTTCAAACCTAACGTCAACAATGCTCTCAAGATGTTCTTGAAGGCTGCCGAGCTTGGGTCCACGAAGGCGATGGTCGATGCCGGACTCATATTCTGGGAGAGAGGCGACAAGGATAAGGCGTTTGGGTTGTACCGGGAAGCTGCCGAGGCCGGTGACCGGAATGCGCAGGGCAATTTGGGAATGTGGTATTTGCAAGTTGAACCTCCAAATCCAAAGGAAGCTGTAAAGTGGTTATATCTTGCTTCTTTTCAGGGCCATGTCCGAGCTCAATACCAACTTGCAATTTGTCTGTATCAGGGACGTGGGGCAGATCGTAACATGAAAGAAGCGGCCAGGTGGTATTTGAGAGCCGCAGAACGTGGTTATGCGCGTGCTATGTATAATGTATCGCTGTGCTACAAGTATGGGGAAGGGTTAGTGCAGAATCATCGCCAAGCAAGAAAGTGGATGAAGTTGGCAGCTGATCTTGGCCATAGTAAAGCTCAATACGAGCATGGACTCACTCTCTTTTCGGAGCGTGAAAAGATTACAGCTTTAGTGTACTTGGAACTTGCAACCCGAGCTGGGGAAAGAGCAGCAATACATATCAAGGATGTAATTCGTGAACAGCTTTCACCAACTTCGCGGTATAATGCCATGCTTTTAGTGGAGAATTGGCGTGCTTTACCTTCATCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

336

Amino Acids

38.05

Weight (kDa)

9.82

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 54 - 87 5.9e-06 F-box-like
Sel1 PF08238 198 - 232 5.5e-08 Sel1 repeat
Sel1 PF08238 233 - 268 1.5e-09 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 495
Acc36I ACCTGC 1 cut(s) 234
AccII CGCG 3 cut(s) 324, 700, 955
AciI CCGC 7 cut(s) 78, 88, 322, 324, 659, 681, 955
AclWI GGATC 2 cut(s) 24, 174
AcoI YGGCCR 5 cut(s) 266, 270, 319, 660, 799
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 3 cut(s) 127, 461, 872
AfiI CCNNNNNNNGG 7 cut(s) 195, 226, 268, 384, 486, 894, 895
AgsI TTSAA 4 cut(s) 313, 334, 370, 530
AjiI CACGTC 2 cut(s) 138, 632
AjnI CCWGG 2 cut(s) 272, 662
Alw21I GWGCWC 1 cut(s) 598
AlwI GGATC 2 cut(s) 24, 174
AlwNI CAGNNNCTG 2 cut(s) 108, 181
Ama87I CYCGRG 1 cut(s) 888
ApeKI GCWGC 5 cut(s) 102, 374, 470, 788, 905
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
Asp700I GAANNNNTTC 1 cut(s) 308
AspLEI GCGC 2 cut(s) 496, 700
AspS9I GGNCC 4 cut(s) 198, 259, 387, 583
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 2 cut(s) 494, 936
AvaI CYCGRG 1 cut(s) 888
AvaII GGWCC 1 cut(s) 387
AxyI CCTNAGG 1 cut(s) 174
BalI TGGCCA 1 cut(s) 801
BanII GRGCYC 1 cut(s) 598
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 5 cut(s) 114, 361, 457, 800, 917
BccI CCATC 1 cut(s) 394
BceAI ACGGC 5 cut(s) 52, 66, 91, 243, 334
BcgI CGANNNNNNTGC 2 cut(s) 740, 774
BciT130I CCWGG 2 cut(s) 274, 664
BcnI CCSGG 1 cut(s) 464
BfmI CTRYAG 1 cut(s) 241
BfuAI ACCTGC 1 cut(s) 234
BglI GCCNNNNNGGC 1 cut(s) 278
Bme1390I CCNGG 3 cut(s) 274, 464, 664
Bme18I GGWCC 1 cut(s) 387
BmeT110I CYCGRG 1 cut(s) 888
BmgBI CACGTC 2 cut(s) 138, 632
BmgT120I GGNCC 4 cut(s) 198, 259, 387, 583
BmiI GGNNCC 2 cut(s) 199, 388
BmrFI CCNGG 3 cut(s) 274, 464, 664
BmsI GCATC 1 cut(s) 397
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 273, 322, 474
BsaWI WCCGGW 1 cut(s) 486
Bsc4I CCNNNNNNNGG 7 cut(s) 195, 226, 268, 384, 486, 894, 895
Bse118I RCCGGY 2 cut(s) 268, 479
Bse1I ACTGG 1 cut(s) 186
Bse21I CCTNAGG 1 cut(s) 174
BseBI CCWGG 2 cut(s) 274, 664
BseDI CCNNGG 3 cut(s) 273, 322, 474
BseGI GGATG 3 cut(s) 140, 783, 928
BseLI CCNNNNNNNGG 7 cut(s) 195, 226, 268, 384, 486, 894, 895
BseMII CTCAG 2 cut(s) 188, 220
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 136
BseX3I CGGCCG 2 cut(s) 266, 319
BseXI GCAGC 5 cut(s) 114, 361, 457, 800, 917
BseYI CCCAGC 2 cut(s) 22, 893
BsgI GTGCAG 1 cut(s) 770
Bsh1236I CGCG 3 cut(s) 324, 700, 955
Bsh1285I CGRYCG 2 cut(s) 269, 322
BsiEI CGRYCG 2 cut(s) 269, 322
BsiHKAI GWGCWC 1 cut(s) 598
BsiHKCI CYCGRG 1 cut(s) 888
BsiSI CCGG 6 cut(s) 265, 269, 411, 463, 480, 487
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 7 cut(s) 195, 226, 268, 384, 486, 894, 895
BsmFI GGGAC 1 cut(s) 642
BsmI GAATGC 1 cut(s) 496
BsoBI CYCGRG 1 cut(s) 888
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 4 cut(s) 29, 166, 640, 793
BspACI CCGC 7 cut(s) 78, 88, 322, 324, 659, 681, 955
BspCNI CTCAG 2 cut(s) 187, 219
BspFNI CGCG 3 cut(s) 324, 700, 955
BspLI GGNNCC 2 cut(s) 199, 388
BspMAI CTGCAG 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 234
BspPI GGATC 2 cut(s) 24, 174
BsrFI RCCGGY 2 cut(s) 268, 479
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 2 cut(s) 268, 479
BssECI CCNNGG 3 cut(s) 273, 322, 474
BssMI GATC 4 cut(s) 29, 166, 640, 793
BssNI GRCGYC 1 cut(s) 230
Bst2UI CCWGG 2 cut(s) 274, 664
BstACI GRCGYC 1 cut(s) 230
BstC8I GCNNGC 4 cut(s) 8, 270, 702, 990
BstDEI CTNAG 2 cut(s) 174, 206
BstDSI CCRYGG 1 cut(s) 322
BstEII GGTNACC 1 cut(s) 482
BstF5I GGATG 3 cut(s) 140, 783, 928
BstFNI CGCG 3 cut(s) 324, 700, 955
BstHHI GCGC 2 cut(s) 496, 700
BstKTI GATC 4 cut(s) 32, 169, 643, 796
BstMBI GATC 4 cut(s) 29, 166, 640, 793
BstMCI CGRYCG 2 cut(s) 269, 322
BstMWI GCNNNNNNNGC 6 cut(s) 84, 216, 278, 313, 476, 890
BstNI CCWGG 2 cut(s) 274, 664
BstNSI RCATGY 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 482
BstSCI CCNGG 3 cut(s) 272, 462, 662
BstSFI CTRYAG 1 cut(s) 241
BstUI CGCG 3 cut(s) 324, 700, 955
BstV1I GCAGC 5 cut(s) 114, 361, 457, 800, 917
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BstZI CGGCCG 2 cut(s) 266, 319
Bsu36I CCTNAGG 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 322
BtgZI GCGATG 2 cut(s) 413, 743
BtrI CACGTC 2 cut(s) 138, 632
BtsCI GGATG 3 cut(s) 140, 783, 928
BveI ACCTGC 1 cut(s) 234
Cac8I GCNNGC 4 cut(s) 8, 270, 702, 990
CaiI CAGNNNCTG 2 cut(s) 108, 181
CfoI GCGC 2 cut(s) 496, 700
Cfr10I RCCGGY 2 cut(s) 268, 479
Cfr13I GGNCC 4 cut(s) 198, 259, 387, 583
Cfr42I CCGCGG 1 cut(s) 325
CseI GACGC 1 cut(s) 219
Csp6I GTAC 3 cut(s) 126, 460, 871
CviAII CATG 5 cut(s) 18, 587, 649, 824, 967
CviQI GTAC 3 cut(s) 126, 460, 871
DdeI CTNAG 2 cut(s) 174, 206
DpnI GATC 4 cut(s) 31, 168, 642, 795
DpnII GATC 4 cut(s) 29, 166, 640, 793
EaeI YGGCCR 5 cut(s) 266, 270, 319, 660, 799
EagI CGGCCG 2 cut(s) 266, 319
EciI GGCGGA 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 596
EclXI CGGCCG 2 cut(s) 266, 319
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 1 cut(s) 387
Eco52I CGGCCG 2 cut(s) 266, 319
Eco53kI GAGCTC 1 cut(s) 596
Eco81I CCTNAGG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 888
Eco91I GGTNACC 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 596
EcoO109I RGGNCCY 2 cut(s) 198, 259
EcoO65I GGTNACC 1 cut(s) 482
EcoRII CCWGG 2 cut(s) 272, 662
EcoT38I GRGCYC 1 cut(s) 598
FaeI CATG 5 cut(s) 21, 590, 652, 827, 970
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 350, 382
FaqI GGGAC 1 cut(s) 642
FatI CATG 5 cut(s) 17, 586, 648, 823, 966
FokI GGATG 3 cut(s) 127, 790, 935
FriOI GRGCYC 1 cut(s) 598
FseI GGCCGGCC 1 cut(s) 272
FspI TGCGCA 1 cut(s) 495
GlaI GCGC 2 cut(s) 495, 699
GsaI CCCAGC 2 cut(s) 26, 897
HapII CCGG 6 cut(s) 265, 269, 411, 463, 480, 487
HgaI GACGC 1 cut(s) 219
HhaI GCGC 2 cut(s) 496, 700
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 5 cut(s) 21, 590, 652, 827, 970
Hin6I GCGC 2 cut(s) 494, 698
HinP1I GCGC 2 cut(s) 494, 698
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 4 cut(s) 131, 414, 754, 828
HpaII CCGG 6 cut(s) 265, 269, 411, 463, 480, 487
HphI GGTGA 2 cut(s) 494, 936
Hpy166II GTNNAC 5 cut(s) 135, 346, 390, 871, 935
Hpy188I TCNGA 4 cut(s) 34, 166, 593, 844
Hpy188III TCNNGA 7 cut(s) 109, 176, 292, 358, 367, 932, 1008
Hpy8I GTNNAC 5 cut(s) 135, 346, 390, 871, 935
Hpy99I CGWCG 2 cut(s) 38, 235
HpyAV CCTTC 4 cut(s) 364, 388, 734, 1008
HpyCH4IV ACGT 4 cut(s) 137, 342, 631, 688
HpyCH4V TGCA 5 cut(s) 243, 523, 611, 751, 884
HpyF10VI GCNNNNNNNGC 6 cut(s) 84, 216, 278, 313, 476, 890
HpyF3I CTNAG 2 cut(s) 174, 206
HpySE526I ACGT 4 cut(s) 137, 342, 631, 688
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 5 cut(s) 21, 590, 652, 827, 970
HspAI GCGC 2 cut(s) 494, 698
KroI GCCGGC 1 cut(s) 268
KroNI GCCGGC 1 cut(s) 270
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 4 cut(s) 29, 166, 640, 793
LmnI GCTCC 1 cut(s) 844
Lsp1109I GCAGC 5 cut(s) 114, 361, 457, 800, 917
LweI GCATC 1 cut(s) 397
MaeII ACGT 4 cut(s) 137, 342, 631, 688
MaeIII GTNAC 2 cut(s) 482, 644
MalI GATC 4 cut(s) 31, 168, 642, 795
MboI GATC 4 cut(s) 29, 166, 640, 793
MboII GAAGA 1 cut(s) 996
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 598
MlsI TGGCCA 1 cut(s) 801
MluCI AATT 4 cut(s) 502, 612, 927, 982
MluNI TGGCCA 1 cut(s) 801
MlyI GAGTC 3 cut(s) 140, 408, 822
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 801
MroNI GCCGGC 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 308
MscI TGGCCA 1 cut(s) 801
Msp20I TGGCCA 1 cut(s) 801
MspA1I CMGCKG 2 cut(s) 324, 791
MspI CCGG 6 cut(s) 265, 269, 411, 463, 480, 487
MspR9I CCNGG 3 cut(s) 274, 464, 664
Mva1269I GAATGC 1 cut(s) 496
MvaI CCWGG 2 cut(s) 274, 664
MvnI CGCG 3 cut(s) 324, 700, 955
MwoI GCNNNNNNNGC 6 cut(s) 84, 216, 278, 313, 476, 890
NaeI GCCGGC 1 cut(s) 270
NciI CCSGG 1 cut(s) 464
NdeII GATC 4 cut(s) 29, 166, 640, 793
NgoMIV GCCGGC 1 cut(s) 268
NlaIII CATG 5 cut(s) 21, 590, 652, 827, 970
NlaIV GGNNCC 2 cut(s) 199, 388
NmeAIII GCCGAG 2 cut(s) 403, 499
NmuCI GTSAC 1 cut(s) 482
NsbI TGCGCA 1 cut(s) 495
NspI RCATGY 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PctI GAATGC 1 cut(s) 496
PdiI GCCGGC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 754
PleI GAGTC 3 cut(s) 139, 408, 822
PpsI GAGTC 3 cut(s) 139, 408, 822
Psp124BI GAGCTC 1 cut(s) 598
Psp6I CCWGG 2 cut(s) 272, 662
PspEI GGTNACC 1 cut(s) 482
PspFI CCCAGC 2 cut(s) 22, 893
PspGI CCWGG 2 cut(s) 272, 662
PspN4I GGNNCC 2 cut(s) 199, 388
PspPI GGNCC 4 cut(s) 198, 259, 387, 583
PstI CTGCAG 1 cut(s) 245
PstNI CAGNNNCTG 2 cut(s) 108, 181
PsuI RGATCY 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 791
RigI GGCCGGCC 1 cut(s) 272
RsaI GTAC 3 cut(s) 127, 461, 872
RsaNI GTAC 3 cut(s) 126, 460, 871
SacI GAGCTC 1 cut(s) 598
SacII CCGCGG 1 cut(s) 325
Sau3AI GATC 4 cut(s) 29, 166, 640, 793
Sau96I GGNCC 4 cut(s) 198, 259, 387, 583
SchI GAGTC 3 cut(s) 140, 408, 822
ScrFI CCNGG 3 cut(s) 274, 464, 664
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 1 cut(s) 397
SfcI CTRYAG 1 cut(s) 241
SfiI GGCCNNNNNGGCC 1 cut(s) 278
Sfr303I CCGCGG 1 cut(s) 325
SgrBI CCGCGG 1 cut(s) 325
SinI GGWCC 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 502, 612, 927, 982
SsiI CCGC 7 cut(s) 78, 88, 322, 324, 659, 681, 955
SstI GAGCTC 1 cut(s) 598
StyD4I CCNGG 3 cut(s) 272, 462, 662
TaiI ACGT 4 cut(s) 140, 345, 634, 691
TaqI TCGA 2 cut(s) 28, 405
TasI AATT 4 cut(s) 502, 612, 927, 982
TatI WGTACW 1 cut(s) 870
TauI GCSGC 5 cut(s) 90, 324, 327, 662, 683
TfiI GAWTC 1 cut(s) 754
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 5 cut(s) 102, 374, 470, 788, 905
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 3 cut(s) 665, 794, 990
VpaK11BI GGWCC 1 cut(s) 387
XceI RCATGY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 2 cut(s) 397, 973
XmnI GAANNNNTTC 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.