Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004033

Physical Location & Seq

Genomic Coordinates Reverse (-)

10737690 .. 10740270

Gene Structure 2581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006811

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAGCAAGCAGACGACATGGTCAGCTCGATCCGACGGCTCTCGTTTCACGGCCTTTCCCTTACTCAAAACCAACGGCGGACGAAGCCGCCACCACCACCACCACAAGAGAAGCTTCTGGAAGCACAGCACCCGTACAGAGTCCACGTCGTCCTCCTCGCGCTATGATTTCTCCGATCTGCCTCCGGAATTGGTAGCCAAAATCGGAGCCTCTCTCAGCTACCACAGCCTCAAAACGGCGTCGTTGGTCTGCACGTCGTGGTGCGAGGCCCTCCGGCCGGCCAGAGAGGCCGCGAAGTTCTTGACTTGGGGCAAGCAGTTCAAGCACGGCCGCGGCGATTTCAAACCTAACGTCAACAATGCTCTCAAGATGTTCTTGAAGGCTGCCGAGCTTGGGTCCACGAAGGCGATGGTCGATGCCGGACTCATATTCTGGGAGAGAGGCGACAAGGATAAGGCGTTTGGGTTGTACCGGGAAGCTGCCGAGGCCGGTGACCGGAATGCGCAGGGCAATTTGGGAATGTGGTATTTGCAAGTTGAACCTCCAAATCCAAAGGAAGCTGTAAAGTGGTTATATCTTGCTTCTTTTCAGGGCCATGTCCGAGCTCAATACCAACTTGCAATTTGTCTGTATCAGGGACGTGGGGCAGATCGTAACATGAAAGAAGCGGCCAGGTGGTATTTGAGAGCCGCAGAACGTGGTTATGCGCGTGCTATGTATAATGTATCACTGTGCTACAAGTATGGGGAAGGGTTAGTGCAGAATCATCGCCGAGCAAGAAAGTGGATGAAGTGGGCAGCTGATCTTGGCCATAGTAAAGCTCAATATGAGTATGGACTCACTCTCTTTTCGGAGGGTGAAAAGATTACAGCTTTAGTGTACTTGGAACTTGCAACCCGAGCTGGGGAAAGAGCAGCAATACATATCAAGGATGTAATTCGCGAACAGCTTTCACCAACTTTGCGGTATAATGCCATGCTTTTAGTGGAGAATTGGCGTGCTTTACCTTCATCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Sel1

Protein Analysis

340

Amino Acids

38.58

Weight (kDa)

9.84

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sel1	PF08238	201 - 235	5.6e-08	Sel1 repeat
Sel1	PF08238	236 - 271	1.3e-07	Sel1 repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70590
fragaria_vesca	FvH4_4g05690 FvH4_4g25470
malus_domestica	MD13G1102600.v1.1
prunus_persica	Prupe.1G243200_v2.0.a1
pyrus_communis	pycom13g08970
rosa_chinensis	RchiOBHm_Chr1g0318701 RchiOBHm_Chr4g0432791 RchiOBHm_Chr4g0436601 RchiOBHm_Chr7g0240871
rosa_laevigata	RLG00000000615 RLG00000006811 RLG00000009495
rosa_multiflora	Rmu_sc0002313.1_g000016 Rmu_sc0005234.1_g000002 Rmu_sc0012180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219440 Rroxscaffold_5G00341770 Rroxscaffold_5G00374240
rosa_rugosa	Rorug03G0346700 Rorug04G0262900 Rorug04G0263000 Rorug07G0339800
rosa_samantha	Rh4AG317000 Rh4BG325300 Rh4DG320400 Rh6DG077200 Rh7AG494400 Rh7BG466100 Rh7CG512600 Rh7DG479400
rosa_wichuraiana	Rw4G027580 Rw7G041820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
Acc16I	TGCGCA	1 cut(s)	504
AccII	CGCG	5 cut(s)	160, 293, 333, 709, 942
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	8 cut(s)	78, 88, 291, 331, 333, 668, 690, 964
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	5 cut(s)	275, 279, 328, 669, 808
AcyI	GRCGYC	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	258
AfaI	GTAC	3 cut(s)	136, 470, 881
AfiI	CCNNNNNNNGG	6 cut(s)	235, 277, 393, 495, 903, 904
AgsI	TTSAA	4 cut(s)	322, 343, 379, 539
AjiI	CACGTC	3 cut(s)	147, 255, 641
AjnI	CCWGG	1 cut(s)	671
Alw21I	GWGCWC	1 cut(s)	607
AlwI	GGATC	1 cut(s)	24
Ama87I	CYCGRG	1 cut(s)	897
Aor13HI	TCCGGA	1 cut(s)	184
ApeKI	GCWGC	4 cut(s)	383, 479, 797, 914
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AspLEI	GCGC	3 cut(s)	162, 505, 709
AspS9I	GGNCC	3 cut(s)	268, 396, 592
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	3 cut(s)	503, 869, 945
AvaI	CYCGRG	1 cut(s)	897
AvaII	GGWCC	1 cut(s)	396
BalI	TGGCCA	1 cut(s)	810
BanII	GRGCYC	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	4 cut(s)	370, 466, 809, 926
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	5 cut(s)	52, 66, 91, 252, 343
BcgI	CGANNNNNNTGC	2 cut(s)	749, 783
BciT130I	CCWGG	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	473
BglI	GCCNNNNNGGC	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	473, 673
Bme18I	GGWCC	1 cut(s)	396
BmeT110I	CYCGRG	1 cut(s)	897
BmgBI	CACGTC	3 cut(s)	147, 255, 641
BmgT120I	GGNCC	3 cut(s)	268, 396, 592
BmiI	GGNNCC	2 cut(s)	208, 397
BmrFI	CCNGG	2 cut(s)	473, 673
BmsI	GCATC	1 cut(s)	406
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	331, 483
BsaWI	WCCGGW	2 cut(s)	184, 495
Bsc4I	CCNNNNNNNGG	6 cut(s)	235, 277, 393, 495, 903, 904
Bse118I	RCCGGY	2 cut(s)	277, 488
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	673
BseDI	CCNNGG	2 cut(s)	331, 483
BseGI	GGATG	2 cut(s)	792, 937
BseLI	CCNNNNNNNGG	6 cut(s)	235, 277, 393, 495, 903, 904
BseMII	CTCAG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	145
BseX3I	CGGCCG	2 cut(s)	275, 328
BseXI	GCAGC	4 cut(s)	370, 466, 809, 926
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	2 cut(s)	235, 779
Bsh1236I	CGCG	5 cut(s)	160, 293, 333, 709, 942
Bsh1285I	CGRYCG	2 cut(s)	278, 331
BsiEI	CGRYCG	2 cut(s)	278, 331
BsiHKAI	GWGCWC	1 cut(s)	607
BsiHKCI	CYCGRG	1 cut(s)	897
BsiSI	CCGG	7 cut(s)	185, 274, 278, 420, 472, 489, 496
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	6 cut(s)	235, 277, 393, 495, 903, 904
BsmFI	GGGAC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	505
BsoBI	CYCGRG	1 cut(s)	897
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	29, 175, 649, 802
Bsp68I	TCGCGA	1 cut(s)	942
BspACI	CCGC	8 cut(s)	78, 88, 291, 331, 333, 668, 690, 964
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	184
BspFNI	CGCG	5 cut(s)	160, 293, 333, 709, 942
BspLI	GGNNCC	2 cut(s)	208, 397
BspPI	GGATC	1 cut(s)	24
BsrFI	RCCGGY	2 cut(s)	277, 488
BssAI	RCCGGY	2 cut(s)	277, 488
BssECI	CCNNGG	2 cut(s)	331, 483
BssMI	GATC	4 cut(s)	29, 175, 649, 802
BssNI	GRCGYC	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	673
Bst4CI	ACNGT	1 cut(s)	732
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	5 cut(s)	8, 279, 314, 711, 999
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	331
BstEII	GGTNACC	1 cut(s)	491
BstF5I	GGATG	2 cut(s)	792, 937
BstFNI	CGCG	5 cut(s)	160, 293, 333, 709, 942
BstHHI	GCGC	3 cut(s)	162, 505, 709
BstKTI	GATC	4 cut(s)	32, 178, 652, 805
BstMBI	GATC	4 cut(s)	29, 175, 649, 802
BstMCI	CGRYCG	2 cut(s)	278, 331
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 225, 287, 322, 485, 899
BstNI	CCWGG	1 cut(s)	673
BstPI	GGTNACC	1 cut(s)	491
BstSCI	CCNGG	2 cut(s)	471, 671
BstUI	CGCG	5 cut(s)	160, 293, 333, 709, 942
BstV1I	GCAGC	4 cut(s)	370, 466, 809, 926
BstZI	CGGCCG	2 cut(s)	275, 328
BtgI	CCRYGG	1 cut(s)	331
BtgZI	GCGATG	2 cut(s)	422, 752
BtrI	CACGTC	3 cut(s)	147, 255, 641
BtsCI	GGATG	2 cut(s)	792, 937
BtsIMutI	CAGTG	1 cut(s)	728
BtuMI	TCGCGA	1 cut(s)	942
Cac8I	GCNNGC	5 cut(s)	8, 279, 314, 711, 999
CfoI	GCGC	3 cut(s)	162, 505, 709
Cfr10I	RCCGGY	2 cut(s)	277, 488
Cfr13I	GGNCC	3 cut(s)	268, 396, 592
Cfr42I	CCGCGG	1 cut(s)	334
CseI	GACGC	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	135, 469, 880
CviAII	CATG	4 cut(s)	18, 596, 658, 976
CviQI	GTAC	3 cut(s)	135, 469, 880
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	4 cut(s)	31, 177, 651, 804
DpnII	GATC	4 cut(s)	29, 175, 649, 802
DraIII	CACNNNGTG	1 cut(s)	258
DrdI	GACNNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	5 cut(s)	275, 279, 328, 669, 808
EagI	CGGCCG	2 cut(s)	275, 328
EciI	GGCGGA	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	605
EclXI	CGGCCG	2 cut(s)	275, 328
Eco24I	GRGCYC	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	396
Eco52I	CGGCCG	2 cut(s)	275, 328
Eco53kI	GAGCTC	1 cut(s)	605
Eco88I	CYCGRG	1 cut(s)	897
Eco91I	GGTNACC	1 cut(s)	491
EcoICRI	GAGCTC	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	268
EcoO65I	GGTNACC	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	671
EcoT38I	GRGCYC	1 cut(s)	607
FaeI	CATG	4 cut(s)	21, 599, 661, 979
FalI	AAGNNNNNCTT	4 cut(s)	98, 130, 359, 391
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	4 cut(s)	17, 595, 657, 975
FokI	GGATG	2 cut(s)	799, 944
FriOI	GRGCYC	1 cut(s)	607
FseI	GGCCGGCC	1 cut(s)	281
FspI	TGCGCA	1 cut(s)	504
GlaI	GCGC	3 cut(s)	161, 504, 708
GsaI	CCCAGC	1 cut(s)	906
HapII	CCGG	7 cut(s)	185, 274, 278, 420, 472, 489, 496
HgaI	GACGC	1 cut(s)	228
HhaI	GCGC	3 cut(s)	162, 505, 709
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	21, 599, 661, 979
Hin6I	GCGC	3 cut(s)	160, 503, 707
HinP1I	GCGC	3 cut(s)	160, 503, 707
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	4 cut(s)	140, 423, 763, 837
HpaII	CCGG	7 cut(s)	185, 274, 278, 420, 472, 489, 496
HphI	GGTGA	3 cut(s)	503, 869, 945
Hpy166II	GTNNAC	4 cut(s)	144, 355, 399, 880
Hpy188I	TCNGA	5 cut(s)	34, 175, 206, 602, 853
Hpy188III	TCNNGA	7 cut(s)	118, 185, 301, 367, 376, 941, 1017
Hpy8I	GTNNAC	4 cut(s)	144, 355, 399, 880
Hpy99I	CGWCG	4 cut(s)	38, 151, 244, 259
HpyAV	CCTTC	4 cut(s)	373, 397, 743, 1017
HpyCH4III	ACNGT	1 cut(s)	732
HpyCH4IV	ACGT	5 cut(s)	146, 254, 351, 640, 697
HpyCH4V	TGCA	5 cut(s)	252, 532, 620, 760, 893
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 225, 287, 322, 485, 899
HpyF3I	CTNAG	1 cut(s)	215
HpySE526I	ACGT	5 cut(s)	146, 254, 351, 640, 697
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	4 cut(s)	21, 599, 661, 979
HspAI	GCGC	3 cut(s)	160, 503, 707
Kpn2I	TCCGGA	1 cut(s)	184
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
KspI	CCGCGG	1 cut(s)	334
Kzo9I	GATC	4 cut(s)	29, 175, 649, 802
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	4 cut(s)	370, 466, 809, 926
LweI	GCATC	1 cut(s)	406
MaeII	ACGT	5 cut(s)	146, 254, 351, 640, 697
MaeIII	GTNAC	2 cut(s)	491, 653
MalI	GATC	4 cut(s)	31, 177, 651, 804
MboI	GATC	4 cut(s)	29, 175, 649, 802
MboII	GAAGA	1 cut(s)	1005
MhlI	GDGCHC	1 cut(s)	607
MlsI	TGGCCA	1 cut(s)	810
MluCI	AATT	5 cut(s)	188, 511, 621, 936, 991
MluNI	TGGCCA	1 cut(s)	810
MlyI	GAGTC	3 cut(s)	149, 417, 831
MmeI	TCCRAC	1 cut(s)	57
Mox20I	TGGCCA	1 cut(s)	810
MroI	TCCGGA	1 cut(s)	184
MroNI	GCCGGC	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	810
Msp20I	TGGCCA	1 cut(s)	810
MspA1I	CMGCKG	2 cut(s)	333, 800
MspI	CCGG	7 cut(s)	185, 274, 278, 420, 472, 489, 496
MspR9I	CCNGG	2 cut(s)	473, 673
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	673
MvnI	CGCG	5 cut(s)	160, 293, 333, 709, 942
MwoI	GCNNNNNNNGC	6 cut(s)	84, 225, 287, 322, 485, 899
NaeI	GCCGGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	473
NdeII	GATC	4 cut(s)	29, 175, 649, 802
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	4 cut(s)	21, 599, 661, 979
NlaIV	GGNNCC	2 cut(s)	208, 397
NmeAIII	GCCGAG	3 cut(s)	412, 508, 797
NmuCI	GTSAC	1 cut(s)	491
NruI	TCGCGA	1 cut(s)	942
NsbI	TGCGCA	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	1 cut(s)	505
PdiI	GCCGGC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	763
PflFI	GACNNNGTC	1 cut(s)	19
PleI	GAGTC	3 cut(s)	148, 417, 831
PpsI	GAGTC	3 cut(s)	148, 417, 831
Psp124BI	GAGCTC	1 cut(s)	607
Psp6I	CCWGG	1 cut(s)	671
PspEI	GGTNACC	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	902
PspGI	CCWGG	1 cut(s)	671
PspN4I	GGNNCC	2 cut(s)	208, 397
PspPI	GGNCC	3 cut(s)	268, 396, 592
PsyI	GACNNNGTC	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	800
RigI	GGCCGGCC	1 cut(s)	281
RruI	TCGCGA	1 cut(s)	942
RsaI	GTAC	3 cut(s)	136, 470, 881
RsaNI	GTAC	3 cut(s)	135, 469, 880
SacI	GAGCTC	1 cut(s)	607
SacII	CCGCGG	1 cut(s)	334
Sau3AI	GATC	4 cut(s)	29, 175, 649, 802
Sau96I	GGNCC	3 cut(s)	268, 396, 592
SchI	GAGTC	3 cut(s)	149, 417, 831
ScrFI	CCNGG	2 cut(s)	473, 673
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	1 cut(s)	406
SfiI	GGCCNNNNNGGCC	1 cut(s)	287
Sfr303I	CCGCGG	1 cut(s)	334
SgrBI	CCGCGG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	5 cut(s)	188, 511, 621, 936, 991
SsiI	CCGC	8 cut(s)	78, 88, 291, 331, 333, 668, 690, 964
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	2 cut(s)	471, 671
TaaI	ACNGT	1 cut(s)	732
TaiI	ACGT	5 cut(s)	149, 257, 354, 643, 700
TaqI	TCGA	2 cut(s)	28, 414
TasI	AATT	5 cut(s)	188, 511, 621, 936, 991
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	6 cut(s)	90, 293, 333, 336, 671, 692
TfiI	GAWTC	1 cut(s)	763
TscAI	CASTG	1 cut(s)	735
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	4 cut(s)	383, 479, 797, 914
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	674, 803, 999
TspRI	CASTG	1 cut(s)	735
Tth111I	GACNNNGTC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	396
XcmI	CCANNNNNNNNNTGG	2 cut(s)	406, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.