Rmu_sc0012180.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012180.1
OG0004033
Physical Location & Seq
Reverse (-)
1 .. 834
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012180.1_g000001.1.cds

Sequence Viewer

Length: 524 bp
atgagcaagcagacgacatgcccaggtcgatccgacggctctcgtttcgcggcctttcccttactcaaaaccaacggcggacgaagccgccgccaccaccaccacaagagcagcttctggaagcacagcacccgtacagagtccacgtcatcctcctcacgctatgatttctcggatctgcctcaggaactggtagccaaaatcggggcctctctcagctaccacagcctcaaaacggcgtcgttggtctgcaggtcgtggtgcgaggccctccggccggccagggaggccaccaagttcttgacttgggggaagcagttcaagcacggccgcggcgatttcaaacctaacgtcaacaatgctctcaagatgttcttgaaggctgccgagcttgggtccacgaaggcgatggtcgatgccggactcatattctgggagagaggcgacaaggataaggcgtttgggttgtaccgggaagctgccgaggccggtgaccggaatgcgcagggcaatttgggaatgtg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

174

Amino Acids

19.38

Weight (kDa)

10.01

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 243
AccII CGCG 2 cut(s) 50, 333
AciI CCGC 6 cut(s) 50, 78, 88, 91, 331, 333
AclWI GGATC 2 cut(s) 24, 183
AcoI YGGCCR 3 cut(s) 275, 279, 328
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 2 cut(s) 136, 470
AfiI CCNNNNNNNGG 5 cut(s) 204, 235, 277, 393, 495
AgsI TTSAA 3 cut(s) 322, 343, 379
AjiI CACGTC 1 cut(s) 147
AjnI CCWGG 2 cut(s) 22, 281
AluBI AGCT 4 cut(s) 114, 219, 391, 479
AluI AGCT 4 cut(s) 114, 219, 391, 479
AlwI GGATC 2 cut(s) 24, 183
AlwNI CAGNNNCTG 2 cut(s) 117, 190
AoxI GGCC 8 cut(s) 51, 207, 267, 275, 279, 288, 328, 486
ApeKI GCWGC 3 cut(s) 111, 383, 479
ArsI GACNNNNNNTTYG 2 cut(s) 336, 368
Asp700I GAANNNNTTC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 505
AspS9I GGNCC 3 cut(s) 207, 268, 396
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 503
AvaII GGWCC 1 cut(s) 396
AxyI CCTNAGG 1 cut(s) 183
BbvI GCAGC 3 cut(s) 123, 370, 466
BccI CCATC 1 cut(s) 403
BceAI ACGGC 4 cut(s) 52, 91, 252, 343
BciT130I CCWGG 2 cut(s) 24, 283
BcnI CCSGG 1 cut(s) 473
BfmI CTRYAG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 287
BisI GCNGC 8 cut(s) 51, 88, 91, 112, 331, 334, 384, 480
BlsI GCNGC 8 cut(s) 52, 89, 92, 113, 332, 335, 385, 481
Bme1390I CCNGG 3 cut(s) 24, 283, 473
Bme18I GGWCC 1 cut(s) 396
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 3 cut(s) 207, 268, 396
BmiI GGNNCC 2 cut(s) 208, 397
BmrFI CCNGG 3 cut(s) 24, 283, 473
BmsI GCATC 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 4 cut(s) 22, 282, 331, 483
BsaWI WCCGGW 1 cut(s) 495
Bsc4I CCNNNNNNNGG 5 cut(s) 204, 235, 277, 393, 495
Bse118I RCCGGY 2 cut(s) 277, 488
Bse1I ACTGG 1 cut(s) 195
Bse21I CCTNAGG 1 cut(s) 183
BseBI CCWGG 2 cut(s) 24, 283
BseDI CCNNGG 4 cut(s) 22, 282, 331, 483
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 5 cut(s) 204, 235, 277, 393, 495
BseMII CTCAG 2 cut(s) 197, 229
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 145
BseX3I CGGCCG 2 cut(s) 275, 328
BseXI GCAGC 3 cut(s) 123, 370, 466
Bsh1236I CGCG 2 cut(s) 50, 333
Bsh1285I CGRYCG 2 cut(s) 278, 331
BshFI GGCC 8 cut(s) 53, 209, 269, 277, 281, 290, 330, 488
BsiEI CGRYCG 2 cut(s) 278, 331
BsiSI CCGG 6 cut(s) 274, 278, 420, 472, 489, 496
BslI CCNNNNNNNGG 5 cut(s) 204, 235, 277, 393, 495
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 8 cut(s) 53, 209, 269, 277, 281, 290, 330, 488
Bsp143I GATC 2 cut(s) 29, 175
BspACI CCGC 6 cut(s) 50, 78, 88, 91, 331, 333
BspANI GGCC 8 cut(s) 53, 209, 269, 277, 281, 290, 330, 488
BspCNI CTCAG 2 cut(s) 196, 228
BspFNI CGCG 2 cut(s) 50, 333
BspLI GGNNCC 2 cut(s) 208, 397
BspMAI CTGCAG 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 2 cut(s) 24, 183
BsrFI RCCGGY 2 cut(s) 277, 488
BsrI ACTGG 1 cut(s) 195
BssAI RCCGGY 2 cut(s) 277, 488
BssECI CCNNGG 4 cut(s) 22, 282, 331, 483
BssMI GATC 2 cut(s) 29, 175
BssNI GRCGYC 1 cut(s) 239
Bst2UI CCWGG 2 cut(s) 24, 283
BstACI GRCGYC 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 8, 279
BstDEI CTNAG 2 cut(s) 183, 215
BstDSI CCRYGG 1 cut(s) 331
BstEII GGTNACC 1 cut(s) 491
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 2 cut(s) 50, 333
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 2 cut(s) 32, 178
BstMBI GATC 2 cut(s) 29, 175
BstMCI CGRYCG 2 cut(s) 278, 331
BstMWI GCNNNNNNNGC 5 cut(s) 84, 225, 287, 322, 485
BstNI CCWGG 2 cut(s) 24, 283
BstNSI RCATGY 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 491
BstSCI CCNGG 3 cut(s) 22, 281, 471
BstSFI CTRYAG 1 cut(s) 250
BstUI CGCG 2 cut(s) 50, 333
BstV1I GCAGC 3 cut(s) 123, 370, 466
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BstZI CGGCCG 2 cut(s) 275, 328
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 8 cut(s) 53, 209, 269, 277, 281, 290, 330, 488
BtgI CCRYGG 1 cut(s) 331
BtgZI GCGATG 1 cut(s) 422
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 149
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 8, 279
CaiI CAGNNNCTG 2 cut(s) 117, 190
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 2 cut(s) 277, 488
Cfr13I GGNCC 3 cut(s) 207, 268, 396
Cfr42I CCGCGG 1 cut(s) 334
CseI GACGC 1 cut(s) 228
Csp6I GTAC 2 cut(s) 135, 469
CviAII CATG 1 cut(s) 18
CviQI GTAC 2 cut(s) 135, 469
DdeI CTNAG 2 cut(s) 183, 215
DpnI GATC 2 cut(s) 31, 177
DpnII GATC 2 cut(s) 29, 175
EaeI YGGCCR 3 cut(s) 275, 279, 328
EagI CGGCCG 2 cut(s) 275, 328
EciI GGCGGA 1 cut(s) 93
EclXI CGGCCG 2 cut(s) 275, 328
Eco47I GGWCC 1 cut(s) 396
Eco52I CGGCCG 2 cut(s) 275, 328
Eco81I CCTNAGG 1 cut(s) 183
Eco91I GGTNACC 1 cut(s) 491
EcoO109I RGGNCCY 2 cut(s) 207, 268
EcoO65I GGTNACC 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 22, 281
FaeI CATG 1 cut(s) 21
FaiI YATR 3 cut(s) 19, 165, 428
FalI AAGNNNNNCTT 4 cut(s) 98, 130, 359, 391
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 8 cut(s) 51, 88, 91, 112, 331, 334, 384, 480
FokI GGATG 1 cut(s) 136
FseI GGCCGGCC 1 cut(s) 281
Fsp4HI GCNGC 8 cut(s) 51, 88, 91, 112, 331, 334, 384, 480
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 1 cut(s) 504
GluI GCNGC 8 cut(s) 51, 88, 91, 112, 331, 334, 384, 480
HaeIII GGCC 8 cut(s) 53, 209, 269, 277, 281, 290, 330, 488
HapII CCGG 6 cut(s) 274, 278, 420, 472, 489, 496
HgaI GACGC 1 cut(s) 228
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 1 cut(s) 21
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 2 cut(s) 140, 423
HpaII CCGG 6 cut(s) 274, 278, 420, 472, 489, 496
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 3 cut(s) 144, 355, 399
Hpy188I TCNGA 2 cut(s) 34, 175
Hpy188III TCNNGA 5 cut(s) 118, 185, 301, 367, 376
Hpy8I GTNNAC 3 cut(s) 144, 355, 399
Hpy99I CGWCG 2 cut(s) 38, 244
HpyAV CCTTC 2 cut(s) 373, 397
HpyCH4IV ACGT 2 cut(s) 146, 351
HpyCH4V TGCA 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 225, 287, 322, 485
HpyF3I CTNAG 2 cut(s) 183, 215
HpySE526I ACGT 2 cut(s) 146, 351
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 1 cut(s) 21
HspAI GCGC 1 cut(s) 503
KroI GCCGGC 1 cut(s) 277
KroNI GCCGGC 1 cut(s) 279
KspI CCGCGG 1 cut(s) 334
Kzo9I GATC 2 cut(s) 29, 175
Lsp1109I GCAGC 3 cut(s) 123, 370, 466
LweI GCATC 1 cut(s) 406
MaeII ACGT 2 cut(s) 146, 351
MaeIII GTNAC 1 cut(s) 491
MalI GATC 2 cut(s) 31, 177
MboI GATC 2 cut(s) 29, 175
MflI RGATCY 1 cut(s) 175
MluCI AATT 1 cut(s) 511
MlyI GAGTC 2 cut(s) 149, 417
MmeI TCCRAC 1 cut(s) 57
MroNI GCCGGC 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 6 cut(s) 274, 278, 420, 472, 489, 496
MspR9I CCNGG 3 cut(s) 24, 283, 473
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 2 cut(s) 24, 283
MvnI CGCG 2 cut(s) 50, 333
MwoI GCNNNNNNNGC 5 cut(s) 84, 225, 287, 322, 485
NaeI GCCGGC 1 cut(s) 279
NciI CCSGG 1 cut(s) 473
NdeII GATC 2 cut(s) 29, 175
NgoMIV GCCGGC 1 cut(s) 277
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 2 cut(s) 208, 397
NmeAIII GCCGAG 2 cut(s) 412, 508
NmuCI GTSAC 1 cut(s) 491
NsbI TGCGCA 1 cut(s) 504
NspI RCATGY 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 505
PdiI GCCGGC 1 cut(s) 279
PdmI GAANNNNTTC 1 cut(s) 317
PkrI GCNGC 8 cut(s) 52, 89, 92, 113, 332, 335, 385, 481
PleI GAGTC 2 cut(s) 148, 417
PpsI GAGTC 2 cut(s) 148, 417
Psp6I CCWGG 2 cut(s) 22, 281
PspEI GGTNACC 1 cut(s) 491
PspGI CCWGG 2 cut(s) 22, 281
PspN4I GGNNCC 2 cut(s) 208, 397
PspPI GGNCC 3 cut(s) 207, 268, 396
PstI CTGCAG 1 cut(s) 254
PstNI CAGNNNCTG 2 cut(s) 117, 190
PsuI RGATCY 1 cut(s) 175
RigI GGCCGGCC 1 cut(s) 281
RsaI GTAC 2 cut(s) 136, 470
RsaNI GTAC 2 cut(s) 135, 469
SacII CCGCGG 1 cut(s) 334
SatI GCNGC 8 cut(s) 51, 88, 91, 112, 331, 334, 384, 480
Sau3AI GATC 2 cut(s) 29, 175
Sau96I GGNCC 3 cut(s) 207, 268, 396
SchI GAGTC 2 cut(s) 149, 417
ScrFI CCNGG 3 cut(s) 24, 283, 473
SetI ASST 9 cut(s) 28, 116, 149, 221, 257, 349, 354, 393, 481
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 1 cut(s) 250
SfiI GGCCNNNNNGGCC 1 cut(s) 287
Sfr303I CCGCGG 1 cut(s) 334
SgrBI CCGCGG 1 cut(s) 334
SinI GGWCC 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
Sse9I AATT 1 cut(s) 511
SsiI CCGC 6 cut(s) 50, 78, 88, 91, 331, 333
StyD4I CCNGG 3 cut(s) 22, 281, 471
TaiI ACGT 2 cut(s) 149, 354
TaqI TCGA 2 cut(s) 28, 414
TasI AATT 1 cut(s) 511
TauI GCSGC 5 cut(s) 53, 90, 93, 333, 336
TseFI GTSAC 1 cut(s) 491
TseI GCWGC 3 cut(s) 111, 383, 479
Tsp45I GTSAC 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 396
XceI RCATGY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmnI GAANNNNTTC 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.