RLG00000000615

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004033
Physical Location & Seq
Forward (+)
2637905 .. 2639194
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000615

Sequence Viewer

Length: 903 bp
ATGAGGAAGCGAAGTCGATGGGAACGCCGGGAAACTACGGCGTTTCCGTTATTGAACACCAAGCAGGGAGGCGAACTCCATCACAAAATCTTCTGGAAAACCAGCAACCGATTCTCCACATCATCCCCAAGGGATTTCTCGGATCTTCCCCAAGAACTGGTAACCAAAATCGGTGCGTCGCTCAGCTACGGGAACCTAAAAACGGCGTCGTTGGTGTGCAGGTCGTGGTGCGACGCTCTTCGGCCGGCGAGAAAGGCCATGAAGTACAAAGAATACGAGCGCTGTGGAAAGCAGTTCAAGCATGGCCTCTCTGGTTTTCTACCTAATATACACAATGCTCTCAAGATGTTTTTGAAGGCTGCGGAGTACGGATCAACAAAAGCTATGGTGAACGCCGGACTGATATATTGGAAGAGAGGCGAGACCGGCAAAGCCTGTGGTTTGTACCGAAGAGCTGCGGAGCTCGGAGACCGGAATGCGCAGTTCAATTTGGGACTTTCATATGTGCTAGTTCAACCTCCAAATCCAGAGGAAGCTATAAAGTGGTTAGCTCTCGCTTCTTTTCAAGGCCATGCCGGAGCTCAATACCAACTTGCACATTGTCTGCGTCAGGGTGGGAACATGGAAGAAGCGGCCGGATGGTGTTTGAGAGCTGCAGAAGGTGGTTATGTACGTGCTATGTATAATGTATCCATGTGCTACAAGTATGGGGAAGGGTTAGTTCAGTGTGATCACCAAGCAAGAAAGTGGATGAAGTTGGCAGCTGATTGTGGCCACAAAACGATTGATTTCATCCATCTTTCTCTAGTTGCTTTTAATAATACCGCTTCCAAAGAAAAGAGTTTCATAGCAAAAGTTCTCTTAAAGAAGCGATCCAAACTGAGTTCAAAACTAGTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

301

Amino Acids

33.83

Weight (kDa)

9.83

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 225 - 259 3.4e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 480
Acc36I ACCTGC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 157
AciI CCGC 4 cut(s) 362, 458, 632, 825
AclWI GGATC 3 cut(s) 150, 379, 867
AcoI YGGCCR 3 cut(s) 242, 633, 772
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 4 cut(s) 266, 368, 446, 672
AfeI AGCGCT 1 cut(s) 281
AfiI CCNNNNNNNGG 2 cut(s) 157, 202
AgsI TTSAA 7 cut(s) 55, 298, 355, 487, 515, 566, 888
AhlI ACTAGT 1 cut(s) 892
AluBI AGCT 9 cut(s) 186, 383, 455, 463, 536, 551, 581, 653, 764
AluI AGCT 9 cut(s) 186, 383, 455, 463, 536, 551, 581, 653, 764
Alw21I GWGCWC 2 cut(s) 465, 583
Alw26I GTCTC 2 cut(s) 416, 462
AlwI GGATC 3 cut(s) 150, 379, 867
Aor51HI AGCGCT 1 cut(s) 281
AoxI GGCC 6 cut(s) 242, 255, 304, 568, 633, 772
ApeKI GCWGC 4 cut(s) 359, 455, 653, 761
AspLEI GCGC 2 cut(s) 282, 481
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 400, 725
BalI TGGCCA 1 cut(s) 774
BanII GRGCYC 2 cut(s) 465, 583
Bbv12I GWGCWC 2 cut(s) 465, 583
BbvI GCAGC 4 cut(s) 346, 442, 640, 773
BccI CCATC 4 cut(s) 12, 87, 633, 804
BceAI ACGGC 2 cut(s) 54, 219
BciVI GTATCC 1 cut(s) 700
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 416, 462
BcuI ACTAGT 1 cut(s) 892
BfaI CTAG 4 cut(s) 509, 806, 893, 901
BfmI CTRYAG 1 cut(s) 654
BfoI RGCGCY 1 cut(s) 283
BfuAI ACCTGC 1 cut(s) 210
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 5 cut(s) 360, 456, 633, 654, 762
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 5 cut(s) 361, 457, 634, 655, 763
Bme1390I CCNGG 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 60, 92
Bpu1102I GCTNAGC 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 29
BsaAI YACGTR 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 206
BsaI GGTCTC 2 cut(s) 416, 462
BsaJI CCNNGG 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 202
Bse118I RCCGGY 2 cut(s) 244, 425
Bse1I ACTGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 4 cut(s) 122, 644, 756, 792
BseLI CCNNNNNNNGG 2 cut(s) 157, 202
BseMII CTCAG 2 cut(s) 196, 872
BseNI ACTGG 1 cut(s) 162
BseX3I CGGCCG 2 cut(s) 242, 633
BseXI GCAGC 4 cut(s) 346, 442, 640, 773
BsgI GTGCAG 1 cut(s) 238
Bsh1285I CGRYCG 2 cut(s) 245, 636
BshFI GGCC 6 cut(s) 244, 257, 306, 570, 635, 774
BsiEI CGRYCG 2 cut(s) 245, 636
BsiHKAI GWGCWC 2 cut(s) 465, 583
BsiSI CCGG 7 cut(s) 28, 245, 396, 426, 472, 576, 636
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 157, 202
BsmAI GTCTC 2 cut(s) 416, 462
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 6 cut(s) 244, 257, 306, 570, 635, 774
Bso31I GGTCTC 2 cut(s) 416, 462
Bsp1286I GDGCHC 2 cut(s) 465, 583
Bsp143I GATC 4 cut(s) 142, 371, 730, 872
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 4 cut(s) 362, 458, 632, 825
BspANI GGCC 6 cut(s) 244, 257, 306, 570, 635, 774
BspCNI CTCAG 2 cut(s) 195, 873
BspLI GGNNCC 1 cut(s) 194
BspMAI CTGCAG 1 cut(s) 658
BspMI ACCTGC 1 cut(s) 210
BspPI GGATC 3 cut(s) 150, 379, 867
BspQI GCTCTTC 2 cut(s) 243, 445
BspTNI GGTCTC 2 cut(s) 416, 462
BsrFI RCCGGY 2 cut(s) 244, 425
BsrI ACTGG 1 cut(s) 162
BssAI RCCGGY 2 cut(s) 244, 425
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 4 cut(s) 142, 371, 730, 872
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 128
Bst6I CTCTTC 3 cut(s) 243, 407, 445
BstACI GRCGYC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 182, 881
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 4 cut(s) 122, 644, 756, 792
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 2 cut(s) 282, 481
BstKTI GATC 4 cut(s) 145, 374, 733, 875
BstMAI GTCTC 2 cut(s) 416, 462
BstMBI GATC 4 cut(s) 142, 371, 730, 872
BstMCI CGRYCG 2 cut(s) 245, 636
BstMWI GCNNNNNNNGC 3 cut(s) 254, 298, 426
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 654
BstV1I GCAGC 4 cut(s) 346, 442, 640, 773
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BstZI CGGCCG 2 cut(s) 242, 633
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 6 cut(s) 244, 257, 306, 570, 635, 774
BtsCI GGATG 4 cut(s) 122, 644, 756, 792
BtsIMutI CAGTG 1 cut(s) 731
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 246
CfoI GCGC 2 cut(s) 282, 481
Cfr10I RCCGGY 2 cut(s) 244, 425
CseI GACGC 4 cut(s) 165, 195, 242, 596
Csp6I GTAC 4 cut(s) 265, 367, 445, 671
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 5 cut(s) 259, 302, 572, 622, 694
CviQI GTAC 4 cut(s) 265, 367, 445, 671
DdeI CTNAG 2 cut(s) 182, 881
DpnI GATC 4 cut(s) 144, 373, 732, 874
DpnII GATC 4 cut(s) 142, 371, 730, 872
EaeI YGGCCR 3 cut(s) 242, 633, 772
EagI CGGCCG 2 cut(s) 242, 633
Eam1104I CTCTTC 3 cut(s) 243, 407, 445
EarI CTCTTC 3 cut(s) 243, 407, 445
Ecl136II GAGCTC 2 cut(s) 463, 581
EclXI CGGCCG 2 cut(s) 242, 633
Eco130I CCWWGG 1 cut(s) 128
Eco24I GRGCYC 2 cut(s) 465, 583
Eco31I GGTCTC 2 cut(s) 416, 462
Eco47III AGCGCT 1 cut(s) 281
Eco52I CGGCCG 2 cut(s) 242, 633
Eco53kI GAGCTC 2 cut(s) 463, 581
Eco91I GGTNACC 1 cut(s) 160
EcoICRI GAGCTC 2 cut(s) 463, 581
EcoO65I GGTNACC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 128
EcoT38I GRGCYC 2 cut(s) 465, 583
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 5 cut(s) 262, 305, 575, 625, 697
FaqI GGGAC 1 cut(s) 507
FatI CATG 5 cut(s) 258, 301, 571, 621, 693
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 5 cut(s) 360, 456, 633, 654, 762
FokI GGATG 4 cut(s) 109, 651, 763, 779
FriOI GRGCYC 2 cut(s) 465, 583
Fsp4HI GCNGC 5 cut(s) 360, 456, 633, 654, 762
FspBI CTAG 4 cut(s) 509, 806, 893, 901
FspI TGCGCA 1 cut(s) 480
GlaI GCGC 2 cut(s) 281, 480
GluI GCNGC 5 cut(s) 360, 456, 633, 654, 762
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 6 cut(s) 244, 257, 306, 570, 635, 774
HapII CCGG 7 cut(s) 28, 245, 396, 426, 472, 576, 636
HgaI GACGC 4 cut(s) 165, 195, 242, 596
HhaI GCGC 2 cut(s) 282, 481
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 5 cut(s) 262, 305, 575, 625, 697
Hin6I GCGC 2 cut(s) 280, 479
HinP1I GCGC 2 cut(s) 280, 479
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HinfI GANTC 1 cut(s) 111
HpaII CCGG 7 cut(s) 28, 245, 396, 426, 472, 576, 636
HphI GGTGA 2 cut(s) 400, 725
Hpy166II GTNNAC 2 cut(s) 391, 898
Hpy188I TCNGA 2 cut(s) 142, 467
Hpy188III TCNNGA 3 cut(s) 94, 343, 527
Hpy8I GTNNAC 2 cut(s) 391, 898
Hpy99I CGWCG 3 cut(s) 181, 211, 236
HpyAV CCTTC 3 cut(s) 349, 653, 707
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 3 cut(s) 219, 596, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 298, 426
HpyF3I CTNAG 2 cut(s) 182, 881
HpySE526I ACGT 1 cut(s) 673
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 5 cut(s) 262, 305, 575, 625, 697
HspAI GCGC 2 cut(s) 280, 479
KroI GCCGGC 1 cut(s) 244
KroNI GCCGGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 4 cut(s) 142, 371, 730, 872
LguI GCTCTTC 2 cut(s) 243, 445
LmnI GCTCC 2 cut(s) 460, 578
Lsp1109I GCAGC 4 cut(s) 346, 442, 640, 773
MaeI CTAG 4 cut(s) 509, 806, 893, 901
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 1 cut(s) 160
MalI GATC 4 cut(s) 144, 373, 732, 874
MboI GATC 4 cut(s) 142, 371, 730, 872
MboII GAAGA 6 cut(s) 82, 137, 230, 424, 462, 638
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 2 cut(s) 465, 583
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 1 cut(s) 487
MluNI TGGCCA 1 cut(s) 774
MnlI CCTC 5 cut(s) 62, 317, 410, 523, 528
Mox20I TGGCCA 1 cut(s) 774
MroNI GCCGGC 1 cut(s) 244
MscI TGGCCA 1 cut(s) 774
MseI TTAA 2 cut(s) 816, 863
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 7 cut(s) 28, 245, 396, 426, 472, 576, 636
MspR9I CCNGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 481
MwoI GCNNNNNNNGC 3 cut(s) 254, 298, 426
NaeI GCCGGC 1 cut(s) 246
NciI CCSGG 1 cut(s) 29
NdeI CATATG 1 cut(s) 502
NdeII GATC 4 cut(s) 142, 371, 730, 872
NgoMIV GCCGGC 1 cut(s) 244
NlaIII CATG 5 cut(s) 262, 305, 575, 625, 697
NlaIV GGNNCC 1 cut(s) 194
NsbI TGCGCA 1 cut(s) 480
PciSI GCTCTTC 2 cut(s) 243, 445
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 1 cut(s) 481
PdiI GCCGGC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 5 cut(s) 361, 457, 634, 655, 763
Ppu21I YACGTR 1 cut(s) 674
Psp124BI GAGCTC 2 cut(s) 465, 583
PspEI GGTNACC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 194
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 4 cut(s) 266, 368, 446, 672
RsaNI GTAC 4 cut(s) 265, 367, 445, 671
SacI GAGCTC 2 cut(s) 465, 583
SapI GCTCTTC 2 cut(s) 243, 445
SaqAI TTAA 2 cut(s) 816, 863
SatI GCNGC 5 cut(s) 360, 456, 633, 654, 762
Sau3AI GATC 4 cut(s) 142, 371, 730, 872
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 2 cut(s) 465, 583
SfcI CTRYAG 1 cut(s) 654
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SpeI ACTAGT 1 cut(s) 892
Sse9I AATT 1 cut(s) 487
SsiI CCGC 4 cut(s) 362, 458, 632, 825
SspMI CTAG 4 cut(s) 509, 806, 893, 901
SstI GAGCTC 2 cut(s) 465, 583
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 128
TaiI ACGT 1 cut(s) 676
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 487
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 2 cut(s) 816, 863
Tru9I TTAA 2 cut(s) 816, 863
TscAI CASTG 1 cut(s) 731
TseI GCWGC 4 cut(s) 359, 455, 653, 761
TspDTI ATGAA 5 cut(s) 275, 489, 767, 781, 835
TspGWI ACGGA 2 cut(s) 36, 384
TspRI CASTG 1 cut(s) 731
Van91I CCANNNNNTGG 1 cut(s) 157
XspI CTAG 4 cut(s) 509, 806, 893, 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.