Rorug07G0339800

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004033
Physical Location & Seq
Reverse (-)
37412490 .. 37413104
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0339800.1

Sequence Viewer

Length: 615 bp
ATGGCTAGAAGGAAGGTGAGACTACACTACATTGCCAATGAGACTTCCCGACGAATGACATTTAGAAAAAGAAAGAAAGGCCTTTTGAAAAAGGTGGGTGAGATAACCACTCTCTGTGACATCAAGGCCGCGGCGATCATCTACAAGCCCTTTGACGCCGAGCCGGAGGTGTTCCTAAATCATCCGAAAGTCCACGAACTGCTAATGAAGTTCCGAGATATGCCGCAGATAGATAAGACAAGAAAGATGATCAACCAGGAGACCTTTTTACGACAGCGAATTGACAAAGTCCGGGAGCATATCAGAAAGCAAAGAAGAGACAACCGAGAAAAGGAGATCACTCAAGTTCTGAAGAAGGTGGGTGAGATAACCACTCTCTGTGACATCAAGGCCGCGGCGATCATCTACAGCTCCTTTGACTCAGAGCCGGAGGTGTTCCCAAGTCATCCGGAAGTCCACGAACTGCTAATGAAGTTCCGAGATATGCCGCAGATGGACAAGACAAGAGAGATGGTTGACCAGAAGACATTCTATGACAACGAATCGACAAAATTTGGGAGCAGATCAAAAAGCAAAGACGAGACAATCGAGAAAAGGAGATCACTCAAGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

204

Amino Acids

24.39

Weight (kDa)

9.89

Isoelectric Point (pI)

60.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 50 4e-14 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 131, 395
AccIII TCCGGA 1 cut(s) 448
AciI CCGC 6 cut(s) 129, 131, 224, 393, 395, 488
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
Alw26I GTCTC 5 cut(s) 13, 35, 254, 312, 575
Aor13HI TCCGGA 1 cut(s) 448
AoxI GGCC 3 cut(s) 79, 126, 390
ApoI RAATTY 1 cut(s) 551
Asp700I GAANNNNTTC 1 cut(s) 527
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 3 cut(s) 28, 110, 374
BbsI GAAGAC 1 cut(s) 530
BccI CCATC 2 cut(s) 487, 505
BciT130I CCWGG 1 cut(s) 257
BclI TGATCA 1 cut(s) 249
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 5 cut(s) 13, 35, 254, 312, 575
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 406
BisI GCNGC 6 cut(s) 129, 132, 224, 393, 396, 488
BlsI GCNGC 6 cut(s) 130, 133, 225, 394, 397, 489
Bme1390I CCNGG 2 cut(s) 257, 293
BmrFI CCNGG 2 cut(s) 257, 293
BpiI GAAGAC 1 cut(s) 530
BpuEI CTTGAG 2 cut(s) 327, 590
BpuMI CCSGG 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 129, 393
BsaWI WCCGGW 1 cut(s) 448
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse3DI GCAATG 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 448
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 2 cut(s) 129, 393
BseGI GGATG 2 cut(s) 181, 445
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 435
Bsh1236I CGCG 2 cut(s) 131, 395
BshFI GGCC 3 cut(s) 81, 128, 392
BsiSI CCGG 4 cut(s) 164, 292, 428, 449
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 5 cut(s) 13, 35, 254, 312, 575
BsnI GGCC 3 cut(s) 81, 128, 392
Bso31I GGTCTC 1 cut(s) 254
Bsp13I TCCGGA 1 cut(s) 448
Bsp143I GATC 6 cut(s) 135, 249, 336, 399, 563, 599
BspACI CCGC 6 cut(s) 129, 131, 224, 393, 395, 488
BspANI GGCC 3 cut(s) 81, 128, 392
BspCNI CTCAG 1 cut(s) 434
BspEI TCCGGA 1 cut(s) 448
BspFNI CGCG 2 cut(s) 131, 395
BspTNI GGTCTC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 129, 393
BssMI GATC 6 cut(s) 135, 249, 336, 399, 563, 599
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 421
BstDSI CCRYGG 2 cut(s) 129, 393
BstF5I GGATG 2 cut(s) 181, 445
BstFNI CGCG 2 cut(s) 131, 395
BstKTI GATC 6 cut(s) 138, 252, 339, 402, 566, 602
BstMAI GTCTC 5 cut(s) 13, 35, 254, 312, 575
BstMBI GATC 6 cut(s) 135, 249, 336, 399, 563, 599
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 2 cut(s) 255, 291
BstSFI CTRYAG 1 cut(s) 406
BstUI CGCG 2 cut(s) 131, 395
BstV2I GAAGAC 1 cut(s) 530
BsuRI GGCC 3 cut(s) 81, 128, 392
BtgI CCRYGG 2 cut(s) 129, 393
BtsCI GGATG 2 cut(s) 181, 445
Cfr42I CCGCGG 2 cut(s) 132, 396
CseI GACGC 1 cut(s) 164
CviJI RGCY 8 cut(s) 5, 81, 128, 148, 163, 392, 411, 427
CviKI_1 RGCY 8 cut(s) 5, 81, 128, 148, 163, 392, 411, 427
DdeI CTNAG 1 cut(s) 421
DpnI GATC 6 cut(s) 137, 251, 338, 401, 565, 601
DpnII GATC 6 cut(s) 135, 249, 336, 399, 563, 599
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 81
Eco31I GGTCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 255
FaiI YATR 4 cut(s) 221, 300, 485, 534
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 6 cut(s) 129, 132, 224, 393, 396, 488
FokI GGATG 2 cut(s) 168, 432
Fsp4HI GCNGC 6 cut(s) 129, 132, 224, 393, 396, 488
FspBI CTAG 1 cut(s) 6
GluI GCNGC 6 cut(s) 129, 132, 224, 393, 396, 488
HaeIII GGCC 3 cut(s) 81, 128, 392
HapII CCGG 4 cut(s) 164, 292, 428, 449
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 156
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 2 cut(s) 419, 542
HpaII CCGG 4 cut(s) 164, 292, 428, 449
HphI GGTGA 3 cut(s) 28, 110, 374
Hpy166II GTNNAC 3 cut(s) 193, 457, 517
Hpy188I TCNGA 7 cut(s) 186, 215, 305, 351, 424, 479, 614
Hpy188III TCNNGA 3 cut(s) 48, 449, 589
Hpy8I GTNNAC 3 cut(s) 193, 457, 517
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 3 cut(s) 3, 7, 349
HpyF3I CTNAG 1 cut(s) 421
Hsp92I GRCGYC 1 cut(s) 156
Kpn2I TCCGGA 1 cut(s) 448
Ksp22I TGATCA 1 cut(s) 249
KspI CCGCGG 2 cut(s) 132, 396
Kzo9I GATC 6 cut(s) 135, 249, 336, 399, 563, 599
LmnI GCTCC 3 cut(s) 295, 416, 558
LpnPI CCDG 7 cut(s) 177, 242, 269, 305, 441, 462, 533
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 116, 380
MalI GATC 6 cut(s) 137, 251, 338, 401, 565, 601
MboI GATC 6 cut(s) 135, 249, 336, 399, 563, 599
MboII GAAGA 3 cut(s) 327, 364, 535
MluCI AATT 2 cut(s) 279, 551
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 2 cut(s) 160, 424
MroI TCCGGA 1 cut(s) 448
MroXI GAANNNNTTC 1 cut(s) 527
MspA1I CMGCKG 2 cut(s) 131, 395
MspI CCGG 4 cut(s) 164, 292, 428, 449
MspR9I CCNGG 2 cut(s) 257, 293
MvaI CCWGG 1 cut(s) 257
MvnI CGCG 2 cut(s) 131, 395
NciI CCSGG 1 cut(s) 293
NdeII GATC 6 cut(s) 135, 249, 336, 399, 563, 599
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 116, 380
PceI AGGCCT 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 1 cut(s) 542
PflFI GACNNNGTC 1 cut(s) 287
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 6 cut(s) 130, 133, 225, 394, 397, 489
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PsyI GACNNNGTC 1 cut(s) 287
SacII CCGCGG 2 cut(s) 132, 396
SatI GCNGC 6 cut(s) 129, 132, 224, 393, 396, 488
Sau3AI GATC 6 cut(s) 135, 249, 336, 399, 563, 599
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 257, 293
SetI ASST 7 cut(s) 18, 96, 171, 266, 360, 413, 435
SfcI CTRYAG 1 cut(s) 406
Sfr303I CCGCGG 2 cut(s) 132, 396
SgrBI CCGCGG 2 cut(s) 132, 396
SmlI CTYRAG 2 cut(s) 342, 605
SmoI CTYRAG 2 cut(s) 342, 605
Sse9I AATT 2 cut(s) 279, 551
SseBI AGGCCT 1 cut(s) 81
SsiI CCGC 6 cut(s) 129, 131, 224, 393, 395, 488
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 255, 291
TaqI TCGA 2 cut(s) 545, 588
TasI AATT 2 cut(s) 279, 551
TauI GCSGC 6 cut(s) 131, 134, 226, 395, 398, 490
TfiI GAWTC 1 cut(s) 542
TseFI GTSAC 2 cut(s) 116, 380
Tsp45I GTSAC 2 cut(s) 116, 380
TspDTI ATGAA 2 cut(s) 221, 485
Tth111I GACNNNGTC 1 cut(s) 287
XapI RAATTY 1 cut(s) 551
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.