Rroxscaffold_5G00374240

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
55277134 .. 55279664
2531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374240.1

Sequence Viewer

Length: 1035 bp
ATGAGCAAGCAGACAACATGCCCAGCTCGATCCGACGGCTCTCGTTTCCACGGCGGACGAAGCCGGCACCGACACCACCACAAGAACAGCTTCTGGAAGCACAGCACCCGTACAGAGTCCACGTCATCCTCCTCGGGCTATGATTTCTCGGATCTGCCTCGGGAATTGGTAGCCAAAATCGGGGCCTCTCTCAGCTACCACAGCCTCAAAACGGCGTCGTTGGTCTGCAGGTCGTGGTGCGAGGCCCTCCGGCCGGCCAGGGAGGCCACGAAGTTCTTGACTTGGGGGAAGCAGTTCAAGCACGGCCGCGGCGATTTCAGACCTAGCGTCGACAATGCTCTCAAGATGTTCTTGAAGGCTGCCGAGCTGGGGTCCACGAAGGCGATGGTCGATGCCGGACTCATATTCTGGGAGAGAGGCGACAAGGATAAGGCGTTTGGGTTGTACCGGGAAGCTGCCGAGGCCGGTGACCGGAATGCTCAGGGCAATTTGGGAATGTGGTATTTGCAAGTTGAACCTCCAAATCCAAAGGAAGCTGTAAAGTGGTTATATCTTGCTTCTTTTCAGGGCCATGTCCGAGCTCAATACCAACTTGCAATTTGTCTGTATCAGGGACGTGGGGCAGATCGTAACATGAAAGAAGCAGCCAGGTGGTATTTGAGAGCCGCAGAACGTGGTTATGCGCGTGCTATGTATAATGTATCGCTGTGCTACAAGTATGGGGAAGGGTTAGTGCAGAATCATCGCCGAGCAAGAAAGTGGATGAAGTGGGCAGCTGATCTTGGCCATAGTAAAGCTCAATACGAGCATGGACTCACTCTCTTTTCGTATATGATTGATGGAGGTTTGGATGATAAATCTGTTCAGGAGGGTGAAAAGATTACAGCTTTAGTGTACTTGGAACTTGCAACCCGAGCTGGGGAAAGAGCAGCAATACATATCAAGGATGTAATTCGCGAACAGCTTTCACCAACTTCGCGGTATAATGCCATGCTTTTAGTGGAGAATTGGCGTGCTTTACCTTCATCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

344

Amino Acids

39.05

Weight (kDa)

9.68

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 49 - 82 9.5e-06 F-box-like
Sel1 PF08238 193 - 227 5.7e-08 Sel1 repeat
Sel1 PF08238 228 - 263 1.3e-07 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 330
AccII CGCG 4 cut(s) 309, 685, 957, 979
AciI CCGC 5 cut(s) 54, 307, 309, 666, 979
AclWI GGATC 2 cut(s) 24, 159
AcoI YGGCCR 4 cut(s) 251, 255, 304, 784
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 3 cut(s) 112, 446, 896
AfiI CCNNNNNNNGG 7 cut(s) 180, 211, 253, 369, 471, 918, 919
AgsI TTSAA 3 cut(s) 298, 355, 515
AhdI GACNNNNNGTC 1 cut(s) 326
AjiI CACGTC 2 cut(s) 123, 617
AjnI CCWGG 2 cut(s) 257, 647
Alw21I GWGCWC 1 cut(s) 583
AlwI GGATC 2 cut(s) 24, 159
AlwNI CAGNNNCTG 1 cut(s) 93
Ama87I CYCGRG 3 cut(s) 133, 159, 912
AoxI GGCC 9 cut(s) 183, 243, 251, 255, 264, 304, 462, 568, 784
ApeKI GCWGC 5 cut(s) 359, 455, 644, 773, 929
Asp700I GAANNNNTTC 2 cut(s) 89, 293
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 4 cut(s) 183, 244, 372, 568
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 479, 884, 960
AvaI CYCGRG 3 cut(s) 133, 159, 912
AvaII GGWCC 1 cut(s) 372
BalI TGGCCA 1 cut(s) 786
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 5 cut(s) 346, 442, 656, 785, 941
BccI CCATC 2 cut(s) 379, 833
BceAI ACGGC 4 cut(s) 52, 67, 228, 319
BcgI CGANNNNNNTGC 2 cut(s) 725, 759
BciT130I CCWGG 2 cut(s) 259, 649
BcnI CCSGG 1 cut(s) 449
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 226
BfuAI ACCTGC 1 cut(s) 219
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 8 cut(s) 307, 310, 360, 456, 645, 666, 774, 930
BlsI GCNGC 8 cut(s) 308, 311, 361, 457, 646, 667, 775, 931
Bme1390I CCNGG 3 cut(s) 259, 449, 649
Bme18I GGWCC 1 cut(s) 372
BmeRI GACNNNNNGTC 1 cut(s) 326
BmeT110I CYCGRG 3 cut(s) 133, 159, 912
BmgBI CACGTC 2 cut(s) 123, 617
BmgT120I GGNCC 4 cut(s) 183, 244, 372, 568
BmiI GGNNCC 3 cut(s) 68, 184, 373
BmrFI CCNGG 3 cut(s) 259, 449, 649
BmsI GCATC 1 cut(s) 382
Bpu10I CCTNAGC 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 449
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 6 cut(s) 49, 132, 158, 258, 307, 459
BsaWI WCCGGW 1 cut(s) 471
Bsc4I CCNNNNNNNGG 7 cut(s) 180, 211, 253, 369, 471, 918, 919
Bse118I RCCGGY 3 cut(s) 63, 253, 464
BseBI CCWGG 2 cut(s) 259, 649
BseDI CCNNGG 6 cut(s) 49, 132, 158, 258, 307, 459
BseGI GGATG 4 cut(s) 125, 768, 856, 952
BseLI CCNNNNNNNGG 7 cut(s) 180, 211, 253, 369, 471, 918, 919
BseMII CTCAG 2 cut(s) 205, 494
BseRI GAGGAG 1 cut(s) 121
BseX3I CGGCCG 2 cut(s) 251, 304
BseXI GCAGC 5 cut(s) 346, 442, 656, 785, 941
BseYI CCCAGC 3 cut(s) 22, 367, 917
BsgI GTGCAG 1 cut(s) 755
Bsh1236I CGCG 4 cut(s) 309, 685, 957, 979
Bsh1285I CGRYCG 2 cut(s) 254, 307
BshFI GGCC 9 cut(s) 185, 245, 253, 257, 266, 306, 464, 570, 786
BshNI GGYRCC 1 cut(s) 66
BsiEI CGRYCG 2 cut(s) 254, 307
BsiHKAI GWGCWC 1 cut(s) 583
BsiHKCI CYCGRG 3 cut(s) 133, 159, 912
BsiSI CCGG 7 cut(s) 64, 250, 254, 396, 448, 465, 472
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 7 cut(s) 180, 211, 253, 369, 471, 918, 919
BsmFI GGGAC 1 cut(s) 627
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 9 cut(s) 185, 245, 253, 257, 266, 306, 464, 570, 786
BsoBI CYCGRG 3 cut(s) 133, 159, 912
Bsp1286I GDGCHC 1 cut(s) 583
Bsp143I GATC 4 cut(s) 29, 151, 625, 778
Bsp68I TCGCGA 1 cut(s) 957
BspACI CCGC 5 cut(s) 54, 307, 309, 666, 979
BspANI GGCC 9 cut(s) 185, 245, 253, 257, 266, 306, 464, 570, 786
BspCNI CTCAG 2 cut(s) 204, 493
BspFNI CGCG 4 cut(s) 309, 685, 957, 979
BspLI GGNNCC 3 cut(s) 68, 184, 373
BspMAI CTGCAG 1 cut(s) 230
BspMI ACCTGC 1 cut(s) 219
BspPI GGATC 2 cut(s) 24, 159
BspT107I GGYRCC 1 cut(s) 66
BsrFI RCCGGY 3 cut(s) 63, 253, 464
BssAI RCCGGY 3 cut(s) 63, 253, 464
BssECI CCNNGG 6 cut(s) 49, 132, 158, 258, 307, 459
BssMI GATC 4 cut(s) 29, 151, 625, 778
BssNI GRCGYC 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 259, 649
BstACI GRCGYC 1 cut(s) 215
BstC8I GCNNGC 5 cut(s) 8, 65, 255, 687, 1014
BstDEI CTNAG 2 cut(s) 191, 480
BstDSI CCRYGG 2 cut(s) 49, 307
BstEII GGTNACC 1 cut(s) 467
BstF5I GGATG 4 cut(s) 125, 768, 856, 952
BstFNI CGCG 4 cut(s) 309, 685, 957, 979
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 4 cut(s) 32, 154, 628, 781
BstMBI GATC 4 cut(s) 29, 151, 625, 778
BstMCI CGRYCG 2 cut(s) 254, 307
BstMWI GCNNNNNNNGC 6 cut(s) 60, 201, 263, 298, 461, 914
BstNI CCWGG 2 cut(s) 259, 649
BstNSI RCATGY 1 cut(s) 21
BstPI GGTNACC 1 cut(s) 467
BstSCI CCNGG 3 cut(s) 257, 447, 647
BstSFI CTRYAG 1 cut(s) 226
BstUI CGCG 4 cut(s) 309, 685, 957, 979
BstV1I GCAGC 5 cut(s) 346, 442, 656, 785, 941
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BstZI CGGCCG 2 cut(s) 251, 304
BsuRI GGCC 9 cut(s) 185, 245, 253, 257, 266, 306, 464, 570, 786
BtgI CCRYGG 2 cut(s) 49, 307
BtgZI GCGATG 2 cut(s) 398, 728
BtrI CACGTC 2 cut(s) 123, 617
BtsCI GGATG 4 cut(s) 125, 768, 856, 952
BtuMI TCGCGA 1 cut(s) 957
BveI ACCTGC 1 cut(s) 219
Cac8I GCNNGC 5 cut(s) 8, 65, 255, 687, 1014
CaiI CAGNNNCTG 1 cut(s) 93
CfoI GCGC 1 cut(s) 685
Cfr10I RCCGGY 3 cut(s) 63, 253, 464
Cfr13I GGNCC 4 cut(s) 183, 244, 372, 568
Cfr42I CCGCGG 1 cut(s) 310
CseI GACGC 2 cut(s) 204, 316
Csp6I GTAC 3 cut(s) 111, 445, 895
CviAII CATG 5 cut(s) 18, 572, 634, 809, 991
CviQI GTAC 3 cut(s) 111, 445, 895
DdeI CTNAG 2 cut(s) 191, 480
DpnI GATC 4 cut(s) 31, 153, 627, 780
DpnII GATC 4 cut(s) 29, 151, 625, 778
DriI GACNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 4 cut(s) 251, 255, 304, 784
EagI CGGCCG 2 cut(s) 251, 304
Eam1105I GACNNNNNGTC 1 cut(s) 326
EciI GGCGGA 1 cut(s) 69
Ecl136II GAGCTC 1 cut(s) 581
EclXI CGGCCG 2 cut(s) 251, 304
Eco24I GRGCYC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 372
Eco52I CGGCCG 2 cut(s) 251, 304
Eco53kI GAGCTC 1 cut(s) 581
Eco88I CYCGRG 3 cut(s) 133, 159, 912
Eco91I GGTNACC 1 cut(s) 467
EcoICRI GAGCTC 1 cut(s) 581
EcoO109I RGGNCCY 2 cut(s) 183, 244
EcoO65I GGTNACC 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 257, 647
EcoT38I GRGCYC 1 cut(s) 583
FaeI CATG 5 cut(s) 21, 575, 637, 812, 994
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 335, 367
FaqI GGGAC 1 cut(s) 627
FatI CATG 5 cut(s) 17, 571, 633, 808, 990
FblI GTMKAC 1 cut(s) 330
Fnu4HI GCNGC 8 cut(s) 307, 310, 360, 456, 645, 666, 774, 930
FokI GGATG 4 cut(s) 112, 775, 863, 959
FriOI GRGCYC 1 cut(s) 583
FseI GGCCGGCC 1 cut(s) 257
Fsp4HI GCNGC 8 cut(s) 307, 310, 360, 456, 645, 666, 774, 930
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 684
GluI GCNGC 8 cut(s) 307, 310, 360, 456, 645, 666, 774, 930
GsaI CCCAGC 3 cut(s) 26, 371, 921
HaeIII GGCC 9 cut(s) 185, 245, 253, 257, 266, 306, 464, 570, 786
HapII CCGG 7 cut(s) 64, 250, 254, 396, 448, 465, 472
HgaI GACGC 2 cut(s) 204, 316
HhaI GCGC 1 cut(s) 685
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 5 cut(s) 21, 575, 637, 812, 994
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 4 cut(s) 116, 399, 739, 813
HpaII CCGG 7 cut(s) 64, 250, 254, 396, 448, 465, 472
HphI GGTGA 3 cut(s) 479, 884, 960
Hpy166II GTNNAC 4 cut(s) 120, 331, 375, 895
Hpy188I TCNGA 4 cut(s) 34, 151, 320, 578
Hpy188III TCNNGA 8 cut(s) 94, 161, 277, 343, 352, 866, 956, 1032
Hpy8I GTNNAC 4 cut(s) 120, 331, 375, 895
Hpy99I CGWCG 3 cut(s) 38, 220, 332
HpyAV CCTTC 4 cut(s) 349, 373, 719, 1032
HpyCH4IV ACGT 3 cut(s) 122, 616, 673
HpyCH4V TGCA 5 cut(s) 228, 508, 596, 736, 908
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 201, 263, 298, 461, 914
HpyF3I CTNAG 2 cut(s) 191, 480
HpySE526I ACGT 3 cut(s) 122, 616, 673
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 5 cut(s) 21, 575, 637, 812, 994
HspAI GCGC 1 cut(s) 683
KroI GCCGGC 2 cut(s) 63, 253
KroNI GCCGGC 2 cut(s) 65, 255
KspI CCGCGG 1 cut(s) 310
Kzo9I GATC 4 cut(s) 29, 151, 625, 778
Lsp1109I GCAGC 5 cut(s) 346, 442, 656, 785, 941
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 324
MaeII ACGT 3 cut(s) 122, 616, 673
MaeIII GTNAC 2 cut(s) 467, 629
MalI GATC 4 cut(s) 31, 153, 627, 780
MboI GATC 4 cut(s) 29, 151, 625, 778
MboII GAAGA 1 cut(s) 1020
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 583
MlsI TGGCCA 1 cut(s) 786
MluCI AATT 5 cut(s) 164, 487, 597, 951, 1006
MluNI TGGCCA 1 cut(s) 786
MlyI GAGTC 3 cut(s) 125, 393, 807
MmeI TCCRAC 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 786
MroNI GCCGGC 2 cut(s) 63, 253
MroXI GAANNNNTTC 2 cut(s) 89, 293
MscI TGGCCA 1 cut(s) 786
Msp20I TGGCCA 1 cut(s) 786
MspA1I CMGCKG 2 cut(s) 309, 776
MspI CCGG 7 cut(s) 64, 250, 254, 396, 448, 465, 472
MspR9I CCNGG 3 cut(s) 259, 449, 649
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 2 cut(s) 259, 649
MvnI CGCG 4 cut(s) 309, 685, 957, 979
MwoI GCNNNNNNNGC 6 cut(s) 60, 201, 263, 298, 461, 914
NaeI GCCGGC 2 cut(s) 65, 255
NciI CCSGG 1 cut(s) 449
NdeII GATC 4 cut(s) 29, 151, 625, 778
NgoMIV GCCGGC 2 cut(s) 63, 253
NlaIII CATG 5 cut(s) 21, 575, 637, 812, 994
NlaIV GGNNCC 3 cut(s) 68, 184, 373
NmeAIII GCCGAG 3 cut(s) 388, 484, 773
NmuCI GTSAC 1 cut(s) 467
NruI TCGCGA 1 cut(s) 957
NspI RCATGY 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 481
PdiI GCCGGC 2 cut(s) 65, 255
PdmI GAANNNNTTC 2 cut(s) 89, 293
PfeI GAWTC 1 cut(s) 739
PkrI GCNGC 8 cut(s) 308, 311, 361, 457, 646, 667, 775, 931
PleI GAGTC 3 cut(s) 124, 393, 807
PpsI GAGTC 3 cut(s) 124, 393, 807
Psp124BI GAGCTC 1 cut(s) 583
Psp6I CCWGG 2 cut(s) 257, 647
PspEI GGTNACC 1 cut(s) 467
PspFI CCCAGC 3 cut(s) 22, 367, 917
PspGI CCWGG 2 cut(s) 257, 647
PspN4I GGNNCC 3 cut(s) 68, 184, 373
PspPI GGNCC 4 cut(s) 183, 244, 372, 568
PstI CTGCAG 1 cut(s) 230
PstNI CAGNNNCTG 1 cut(s) 93
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 1 cut(s) 776
RigI GGCCGGCC 1 cut(s) 257
RruI TCGCGA 1 cut(s) 957
RsaI GTAC 3 cut(s) 112, 446, 896
RsaNI GTAC 3 cut(s) 111, 445, 895
SacI GAGCTC 1 cut(s) 583
SacII CCGCGG 1 cut(s) 310
SalI GTCGAC 1 cut(s) 329
SatI GCNGC 8 cut(s) 307, 310, 360, 456, 645, 666, 774, 930
Sau3AI GATC 4 cut(s) 29, 151, 625, 778
Sau96I GGNCC 4 cut(s) 183, 244, 372, 568
SchI GAGTC 3 cut(s) 125, 393, 807
ScrFI CCNGG 3 cut(s) 259, 449, 649
SduI GDGCHC 1 cut(s) 583
SfaNI GCATC 1 cut(s) 382
SfcI CTRYAG 1 cut(s) 226
SfiI GGCCNNNNNGGCC 1 cut(s) 263
Sfr303I CCGCGG 1 cut(s) 310
SgrBI CCGCGG 1 cut(s) 310
SinI GGWCC 1 cut(s) 372
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 5 cut(s) 164, 487, 597, 951, 1006
SsiI CCGC 5 cut(s) 54, 307, 309, 666, 979
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 583
StyD4I CCNGG 3 cut(s) 257, 447, 647
TaiI ACGT 3 cut(s) 125, 619, 676
TaqI TCGA 3 cut(s) 28, 330, 390
TasI AATT 5 cut(s) 164, 487, 597, 951, 1006
TatI WGTACW 1 cut(s) 894
TauI GCSGC 3 cut(s) 309, 312, 668
TfiI GAWTC 1 cut(s) 739
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 5 cut(s) 359, 455, 644, 773, 929
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 3 cut(s) 650, 779, 1014
VpaK11BI GGWCC 1 cut(s) 372
XceI RCATGY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 2 cut(s) 382, 997
XmiI GTMKAC 1 cut(s) 330
XmnI GAANNNNTTC 2 cut(s) 89, 293
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.