Rh6DG077200

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004033
Physical Location & Seq
Forward (+)
8778606 .. 8780787
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG077200.1

Sequence Viewer

Length: 333 bp
ATGTATACTGTCTTTTCAAGGGCGCCACACCAAAAGCAGCTCTTCTCCACCGTCATCACTTCATTTCTCCTTTTAAAGGAGGCCACGAAGTTCTTGACTTGGAGGAAGCAGTTCAAGCACGGCCGCGGCGACTTCAAACCTAACGTCAACAATGCTCTCAAGATGTTCTTGAAGGCTGCCGAGCTTGGGTCCATGAAGGCGATGGTCGATGCCGGACTCATATTCTGGGAGAGAGGCGACAAGGTTAAGGCGTTTGGGTTGTACCGGGAAGCTGCCGAGGCCGGTGACCGGAATGCGCAGGGCAATTTGGGATTGTGGTATTTGCAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

110

Amino Acids

12.59

Weight (kDa)

9.87

Isoelectric Point (pI)

12.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 297
AccB1I GGYRCC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 124, 126
AcoI YGGCCR 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 3 cut(s) 76, 186, 288
AgsI TTSAA 4 cut(s) 18, 115, 136, 172
AluBI AGCT 3 cut(s) 40, 184, 272
AluI AGCT 3 cut(s) 40, 184, 272
AoxI GGCC 3 cut(s) 81, 121, 279
ApeKI GCWGC 3 cut(s) 37, 176, 272
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 2 cut(s) 25, 298
AspS9I GGNCC 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 296
AvaII GGWCC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 22
BbvI GCAGC 3 cut(s) 49, 163, 259
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 136
BcnI CCSGG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 5 cut(s) 38, 124, 127, 177, 273
BlsI GCNGC 5 cut(s) 39, 125, 128, 178, 274
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 24, 190
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 124, 276
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 186, 288
Bse118I RCCGGY 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 124, 276
BseLI CCNNNNNNNGG 3 cut(s) 76, 186, 288
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 49, 163, 259
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 3 cut(s) 83, 123, 281
BshNI GGYRCC 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 4 cut(s) 213, 265, 282, 289
BslI CCNNNNNNNGG 3 cut(s) 76, 186, 288
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 3 cut(s) 83, 123, 281
BspACI CCGC 2 cut(s) 124, 126
BspANI GGCC 3 cut(s) 83, 123, 281
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 24, 190
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 124, 276
BssNAI GTATAC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 23
Bst1107I GTATAC 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 10, 52
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 124
BstEII GGTNACC 1 cut(s) 284
BstENI CCTNNNNNAGG 1 cut(s) 74
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 2 cut(s) 25, 298
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 2 cut(s) 115, 278
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 264
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 49, 163, 259
BstZ17I GTATAC 1 cut(s) 6
BstZI CGGCCG 1 cut(s) 121
BsuRI GGCC 3 cut(s) 83, 123, 281
BtgI CCRYGG 1 cut(s) 124
BtgZI GCGATG 1 cut(s) 215
CfoI GCGC 2 cut(s) 25, 298
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 189
Cfr42I CCGCGG 1 cut(s) 127
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 193
CviJI RGCY 7 cut(s) 40, 83, 123, 176, 184, 272, 281
CviKI_1 RGCY 7 cut(s) 40, 83, 123, 176, 184, 272, 281
CviQI GTAC 1 cut(s) 262
DinI GGCGCC 1 cut(s) 24
DraI TTTAAA 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 121
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EclXI CGGCCG 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 189
Eco52I CGGCCG 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 284
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
FaeI CATG 1 cut(s) 196
FaiI YATR 3 cut(s) 6, 194, 221
FalI AAGNNNNNCTT 4 cut(s) 26, 58, 152, 184
FatI CATG 1 cut(s) 192
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 5 cut(s) 38, 124, 127, 177, 273
Fsp4HI GCNGC 5 cut(s) 38, 124, 127, 177, 273
FspI TGCGCA 1 cut(s) 297
GlaI GCGC 2 cut(s) 24, 297
GluI GCNGC 5 cut(s) 38, 124, 127, 177, 273
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 3 cut(s) 83, 123, 281
HapII CCGG 4 cut(s) 213, 265, 282, 289
HhaI GCGC 2 cut(s) 25, 298
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 2 cut(s) 23, 296
HinP1I GCGC 2 cut(s) 23, 296
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 216
HpaII CCGG 4 cut(s) 213, 265, 282, 289
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 6, 148
Hpy188III TCNNGA 3 cut(s) 94, 160, 169
Hpy8I GTNNAC 2 cut(s) 6, 148
HpyAV CCTTC 2 cut(s) 166, 190
HpyCH4III ACNGT 2 cut(s) 10, 52
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 278
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 2 cut(s) 23, 296
KasI GGCGCC 1 cut(s) 22
KspI CCGCGG 1 cut(s) 127
LguI GCTCTTC 1 cut(s) 47
LpnPI CCDG 6 cut(s) 211, 226, 278, 284, 295, 302
Lsp1109I GCAGC 3 cut(s) 49, 163, 259
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 284
MboII GAAGA 1 cut(s) 34
MluCI AATT 1 cut(s) 304
Mly113I GGCGCC 1 cut(s) 23
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 4 cut(s) 73, 96, 227, 271
MroXI GAANNNNTTC 1 cut(s) 110
MseI TTAA 2 cut(s) 74, 246
MspA1I CMGCKG 1 cut(s) 126
MspI CCGG 4 cut(s) 213, 265, 282, 289
MspR9I CCNGG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 298
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 115, 278
NarI GGCGCC 1 cut(s) 23
NciI CCSGG 1 cut(s) 266
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 24, 190
NmeAIII GCCGAG 2 cut(s) 205, 301
NmuCI GTSAC 1 cut(s) 284
NsbI TGCGCA 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 110
PkrI GCNGC 5 cut(s) 39, 125, 128, 178, 274
PleI GAGTC 1 cut(s) 210
PluTI GGCGCC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 24, 190
PspPI GGNCC 1 cut(s) 189
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SacII CCGCGG 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 74, 246
SatI GCNGC 5 cut(s) 38, 124, 127, 177, 273
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 266
SetI ASST 6 cut(s) 42, 142, 147, 186, 246, 274
SfaNI GCATC 1 cut(s) 199
SfoI GGCGCC 1 cut(s) 24
Sfr303I CCGCGG 1 cut(s) 127
SgrBI CCGCGG 1 cut(s) 127
SinI GGWCC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 304
SsiI CCGC 2 cut(s) 124, 126
SspDI GGCGCC 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 264
TaaI ACNGT 2 cut(s) 10, 52
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 207
TasI AATT 1 cut(s) 304
TauI GCSGC 2 cut(s) 126, 129
Tru1I TTAA 2 cut(s) 74, 246
Tru9I TTAA 2 cut(s) 74, 246
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 3 cut(s) 37, 176, 272
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 51, 209
VpaK11BI GGWCC 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.