Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002313.1

Orthogroup ID

OG0004033

Physical Location & Seq

Genomic Coordinates Forward (+)

71524 .. 73151

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002313.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgggaaaggggacggggaatccccagtatcttattacggggattggggagggtacggggatggagaatgaagtcaggtatggggatgtcgacgtacatcagcaaaaatccagatacataaacggaatgaggaagcgaagtcgatgggaacgccgggaaactacggcgtttccgttattgaacaccaagcaaggaggcgaactccatcacaaaatcttctggaaaaccagcaaccgattctccacatcatccccaagggatttctcggatcttccccaagaactggtaaccaaaatcggtgcgtcgctcagctacggcaacctaaaagcggcgtcgttggtgtgcaagtcgtggtgcgacgcgcttcggccggcgagaaaggccatgaagtacaaagaatacgagcgttggggaaagcagttcaagcaaggcctctgtggttttctacgtaatatacacaatgctctcaagatgttcttgaaggctgcggagtacggatcaacaagggctatggtagacgccggactgatatattggaagagaggcgagaaagagaaggcctgtgttttgtatcggagagctgcggagctcggagaccggaatgggcagttcaatttgggactttcatatgtgctagttcaacctcctccagaggaagctataaagtggttatctcttgctgcttttcaaggtcatgccggagctcaataccaacttgcacattgtctgcgtcagggtgggaacatggaagaagcggccgggtggtgtttgagagccgcagaaggtggttatgtacgtgctatgtataatgtatccatgtgctacaagtatggggaagggttagttcagtgtgatcaccaagcaagaaagtggatgaagttggcagctgattgtggccacagtaaagctcaagattatgtacttcatcaccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Sel1

Protein Analysis

311

Amino Acids

35.22

Weight (kDa)

9.48

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70590
fragaria_vesca	FvH4_4g05690 FvH4_4g25470
malus_domestica	MD13G1102600.v1.1
prunus_persica	Prupe.1G243200_v2.0.a1
pyrus_communis	pycom13g08970
rosa_chinensis	RchiOBHm_Chr1g0318701 RchiOBHm_Chr4g0432791 RchiOBHm_Chr4g0436601 RchiOBHm_Chr7g0240871
rosa_laevigata	RLG00000000615 RLG00000006811 RLG00000009495
rosa_multiflora	Rmu_sc0002313.1_g000016 Rmu_sc0005234.1_g000002 Rmu_sc0012180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219440 Rroxscaffold_5G00341770 Rroxscaffold_5G00374240
rosa_rugosa	Rorug03G0346700 Rorug04G0262900 Rorug04G0263000 Rorug07G0339800
rosa_samantha	Rh4AG317000 Rh4BG325300 Rh4DG320400 Rh6DG077200 Rh7AG494400 Rh7BG466100 Rh7CG512600 Rh7DG479400
rosa_wichuraiana	Rw4G027580 Rw7G041820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccI	GTMKAC	2 cut(s)	90, 516
AccII	CGCG	1 cut(s)	362
AciI	CCGC	5 cut(s)	329, 488, 584, 755, 777
AclWI	GGATC	2 cut(s)	276, 505
AcoI	YGGCCR	3 cut(s)	368, 756, 895
AcyI	GRCGYC	2 cut(s)	332, 519
AfaI	GTAC	6 cut(s)	55, 96, 392, 494, 795, 921
AfiI	CCNNNNNNNGG	2 cut(s)	283, 328
AgsI	TTSAA	6 cut(s)	181, 424, 481, 613, 641, 689
AluBI	AGCT	7 cut(s)	312, 581, 589, 659, 704, 887, 908
AluI	AGCT	7 cut(s)	312, 581, 589, 659, 704, 887, 908
Alw21I	GWGCWC	2 cut(s)	591, 706
Alw26I	GTCTC	1 cut(s)	588
AlwI	GGATC	2 cut(s)	276, 505
AoxI	GGCC	6 cut(s)	368, 381, 430, 558, 756, 895
ApeKI	GCWGC	4 cut(s)	485, 581, 680, 884
AspLEI	GCGC	1 cut(s)	364
AsuC2I	CCSGG	2 cut(s)	155, 760
AsuHPI	GGTGA	2 cut(s)	848, 920
BalI	TGGCCA	1 cut(s)	897
BanII	GRGCYC	2 cut(s)	591, 706
Bbv12I	GWGCWC	2 cut(s)	591, 706
BbvI	GCAGC	4 cut(s)	472, 568, 667, 896
BccI	CCATC	3 cut(s)	55, 138, 213
BceAI	ACGGC	2 cut(s)	180, 331
BciVI	GTATCC	1 cut(s)	823
BclI	TGATCA	1 cut(s)	853
BcnI	CCSGG	2 cut(s)	155, 760
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	1 cut(s)	635
BfuI	GTATCC	1 cut(s)	823
BisI	GCNGC	7 cut(s)	330, 486, 582, 681, 756, 777, 885
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	7 cut(s)	331, 487, 583, 682, 757, 778, 886
Bme1390I	CCNGG	2 cut(s)	155, 760
BmrFI	CCNGG	2 cut(s)	155, 760
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
BpmI	CTGGAG	1 cut(s)	633
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	452, 894
BpuMI	CCSGG	2 cut(s)	155, 760
BsaAI	YACGTR	2 cut(s)	449, 797
BsaHI	GRCGYC	2 cut(s)	332, 519
BsaI	GGTCTC	1 cut(s)	588
BsaJI	CCNNGG	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	597
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 328
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	3 cut(s)	25, 288, 931
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	4 cut(s)	66, 91, 248, 879
BseLI	CCNNNNNNNGG	2 cut(s)	283, 328
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	3 cut(s)	25, 288, 931
BseRI	GAGGAG	1 cut(s)	636
BseX3I	CGGCCG	2 cut(s)	368, 756
BseXI	GCAGC	4 cut(s)	472, 568, 667, 896
Bsh1236I	CGCG	1 cut(s)	362
Bsh1285I	CGRYCG	2 cut(s)	371, 759
BshFI	GGCC	6 cut(s)	370, 383, 432, 560, 758, 897
BsiEI	CGRYCG	2 cut(s)	371, 759
BsiHKAI	GWGCWC	2 cut(s)	591, 706
BsiSI	CCGG	6 cut(s)	154, 371, 522, 598, 699, 759
BslFI	GGGAC	2 cut(s)	25, 633
BslI	CCNNNNNNNGG	2 cut(s)	283, 328
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	2 cut(s)	25, 633
BsnI	GGCC	6 cut(s)	370, 383, 432, 560, 758, 897
Bso31I	GGTCTC	1 cut(s)	588
Bsp1286I	GDGCHC	2 cut(s)	591, 706
Bsp143I	GATC	3 cut(s)	268, 497, 853
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	5 cut(s)	329, 488, 584, 755, 777
BspANI	GGCC	6 cut(s)	370, 383, 432, 560, 758, 897
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	362
BspPI	GGATC	2 cut(s)	276, 505
BspTNI	GGTCTC	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	3 cut(s)	25, 288, 931
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	3 cut(s)	268, 497, 853
BssNI	GRCGYC	2 cut(s)	332, 519
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	902
Bst6I	CTCTTC	1 cut(s)	533
BstACI	GRCGYC	2 cut(s)	332, 519
BstBAI	YACGTR	2 cut(s)	449, 797
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	308
BstEII	GGTNACC	1 cut(s)	286
BstF5I	GGATG	4 cut(s)	66, 91, 248, 879
BstFNI	CGCG	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	3 cut(s)	271, 500, 856
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	3 cut(s)	268, 497, 853
BstMCI	CGRYCG	2 cut(s)	371, 759
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 424
BstPI	GGTNACC	1 cut(s)	286
BstSCI	CCNGG	2 cut(s)	153, 758
BstSNI	TACGTA	1 cut(s)	449
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	4 cut(s)	472, 568, 667, 896
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BstZI	CGGCCG	2 cut(s)	368, 756
BsuI	GTATCC	1 cut(s)	823
BsuRI	GGCC	6 cut(s)	370, 383, 432, 560, 758, 897
BtsCI	GGATG	4 cut(s)	66, 91, 248, 879
BtsIMutI	CAGTG	1 cut(s)	854
Cac8I	GCNNGC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	370
CseI	GACGC	5 cut(s)	291, 321, 368, 527, 719
Csp6I	GTAC	6 cut(s)	54, 95, 391, 493, 794, 920
CviAII	CATG	4 cut(s)	385, 695, 745, 817
CviQI	GTAC	6 cut(s)	54, 95, 391, 493, 794, 920
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	3 cut(s)	270, 499, 855
DpnII	GATC	3 cut(s)	268, 497, 853
EaeI	YGGCCR	3 cut(s)	368, 756, 895
EagI	CGGCCG	2 cut(s)	368, 756
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Ecl136II	GAGCTC	2 cut(s)	589, 704
EclXI	CGGCCG	2 cut(s)	368, 756
Eco105I	TACGTA	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	254
Eco147I	AGGCCT	2 cut(s)	432, 560
Eco24I	GRGCYC	2 cut(s)	591, 706
Eco31I	GGTCTC	1 cut(s)	588
Eco52I	CGGCCG	2 cut(s)	368, 756
Eco53kI	GAGCTC	2 cut(s)	589, 704
Eco91I	GGTNACC	1 cut(s)	286
EcoICRI	GAGCTC	2 cut(s)	589, 704
EcoO65I	GGTNACC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	254
EcoT38I	GRGCYC	2 cut(s)	591, 706
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	4 cut(s)	388, 698, 748, 820
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	2 cut(s)	25, 633
FatI	CATG	4 cut(s)	384, 694, 744, 816
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	2 cut(s)	90, 516
Fnu4HI	GCNGC	7 cut(s)	330, 486, 582, 681, 756, 777, 885
FokI	GGATG	4 cut(s)	73, 98, 235, 886
FriOI	GRGCYC	2 cut(s)	591, 706
Fsp4HI	GCNGC	7 cut(s)	330, 486, 582, 681, 756, 777, 885
FspBI	CTAG	1 cut(s)	635
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	7 cut(s)	330, 486, 582, 681, 756, 777, 885
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	6 cut(s)	370, 383, 432, 560, 758, 897
HapII	CCGG	6 cut(s)	154, 371, 522, 598, 699, 759
HgaI	GACGC	5 cut(s)	291, 321, 368, 527, 719
HhaI	GCGC	1 cut(s)	364
Hin1I	GRCGYC	2 cut(s)	332, 519
Hin1II	CATG	4 cut(s)	388, 698, 748, 820
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	19, 237
HpaII	CCGG	6 cut(s)	154, 371, 522, 598, 699, 759
HphI	GGTGA	2 cut(s)	848, 920
Hpy166II	GTNNAC	2 cut(s)	91, 517
Hpy188I	TCNGA	3 cut(s)	268, 576, 593
Hpy188III	TCNNGA	6 cut(s)	111, 220, 469, 478, 650, 911
Hpy8I	GTNNAC	2 cut(s)	91, 517
Hpy99I	CGWCG	4 cut(s)	95, 307, 337, 362
HpyAV	CCTTC	4 cut(s)	475, 550, 776, 830
HpyCH4III	ACNGT	1 cut(s)	902
HpyCH4IV	ACGT	3 cut(s)	93, 448, 796
HpyCH4V	TGCA	2 cut(s)	345, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 424
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	3 cut(s)	93, 448, 796
Hsp92I	GRCGYC	2 cut(s)	332, 519
Hsp92II	CATG	4 cut(s)	388, 698, 748, 820
HspAI	GCGC	1 cut(s)	362
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	3 cut(s)	268, 497, 853
LmnI	GCTCC	2 cut(s)	586, 701
Lsp1109I	GCAGC	4 cut(s)	472, 568, 667, 896
MaeI	CTAG	1 cut(s)	635
MaeII	ACGT	3 cut(s)	93, 448, 796
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	270, 499, 855
MboI	GATC	3 cut(s)	268, 497, 853
MboII	GAAGA	4 cut(s)	208, 263, 550, 761
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	591, 706
MlsI	TGGCCA	1 cut(s)	897
MluCI	AATT	1 cut(s)	613
MluNI	TGGCCA	1 cut(s)	897
MnlI	CCTC	8 cut(s)	43, 123, 188, 443, 536, 646, 654, 657
Mox20I	TGGCCA	1 cut(s)	897
MroNI	GCCGGC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	897
Msp20I	TGGCCA	1 cut(s)	897
MspA1I	CMGCKG	1 cut(s)	887
MspI	CCGG	6 cut(s)	154, 371, 522, 598, 699, 759
MspR9I	CCNGG	2 cut(s)	155, 760
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	380, 424
NaeI	GCCGGC	1 cut(s)	372
NciI	CCSGG	2 cut(s)	155, 760
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	3 cut(s)	268, 497, 853
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	4 cut(s)	388, 698, 748, 820
PceI	AGGCCT	2 cut(s)	432, 560
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	19, 237
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	7 cut(s)	331, 487, 583, 682, 757, 778, 886
Ppu21I	YACGTR	2 cut(s)	449, 797
Psp124BI	GAGCTC	2 cut(s)	591, 706
PspEI	GGTNACC	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	6 cut(s)	55, 96, 392, 494, 795, 921
RsaNI	GTAC	6 cut(s)	54, 95, 391, 493, 794, 920
SacI	GAGCTC	2 cut(s)	591, 706
SalI	GTCGAC	1 cut(s)	89
SatI	GCNGC	7 cut(s)	330, 486, 582, 681, 756, 777, 885
Sau3AI	GATC	3 cut(s)	268, 497, 853
ScrFI	CCNGG	2 cut(s)	155, 760
SduI	GDGCHC	2 cut(s)	591, 706
SmlI	CTYRAG	2 cut(s)	467, 909
SmoI	CTYRAG	2 cut(s)	467, 909
SnaBI	TACGTA	1 cut(s)	449
Sse9I	AATT	1 cut(s)	613
SseBI	AGGCCT	2 cut(s)	432, 560
SsiI	CCGC	5 cut(s)	329, 488, 584, 755, 777
SspMI	CTAG	1 cut(s)	635
SstI	GAGCTC	2 cut(s)	591, 706
StuI	AGGCCT	2 cut(s)	432, 560
StyD4I	CCNGG	2 cut(s)	153, 758
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	902
TaiI	ACGT	3 cut(s)	96, 451, 799
TaqI	TCGA	2 cut(s)	90, 142
TasI	AATT	1 cut(s)	613
TatI	WGTACW	2 cut(s)	390, 919
TauI	GCSGC	3 cut(s)	332, 758, 779
TfiI	GAWTC	2 cut(s)	19, 237
TscAI	CASTG	1 cut(s)	854
TseI	GCWGC	4 cut(s)	485, 581, 680, 884
TspDTI	ATGAA	5 cut(s)	84, 401, 615, 890, 914
TspGWI	ACGGA	3 cut(s)	138, 162, 510
TspRI	CASTG	1 cut(s)	854
Van91I	CCANNNNNTGG	1 cut(s)	283
XmiI	GTMKAC	2 cut(s)	90, 516
XspI	CTAG	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.