Rorug03G0346700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004033
Physical Location & Seq
Forward (+)
42051676 .. 42051972
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0346700.1

Sequence Viewer

Length: 297 bp
ATGGCTTCTCTTGAGGAAGTTACTGCAAGCTTCCAAGCGTCTCTTGCCCTAGCAGGAGATGATGTAGTTGATATAACTATGCTGTCACGTGGAAAAACTAGAAGAAATTCTCAAGCCTACTTGTTGGGAAGATCCCTATCTCCCAAGCCTGTGGAGATCAATGATCTTCATCGTCACTTTCGTAGGATTTGGGTGGTGGAAAAAAGCTTCAAAATTCAAGAGAGATCAAACTCCCGTTTCCTCTTCTCTTTTGATCATCGTGGCGACCTGCGCAAGGTGATTAGGGGAGGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.21

Weight (kDa)

10.52

Isoelectric Point (pI)

47.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 39 - 98 2.5e-08 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 276
AclWI GGATC 1 cut(s) 126
AcsI RAATTY 2 cut(s) 106, 213
AcvI CACGTG 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 211, 218
AluBI AGCT 2 cut(s) 30, 207
AluI AGCT 2 cut(s) 30, 207
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 126
AoxI GGCC 1 cut(s) 290
ApoI RAATTY 2 cut(s) 106, 213
Asp700I GAANNNNTTC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 289
BbrPI CACGTG 1 cut(s) 89
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 2 cut(s) 50, 99
BfuAI ACCTGC 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 32, 96
BsaAI YACGTR 1 cut(s) 89
BsaBI GATNNNNATC 2 cut(s) 136, 168
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse8I GATNNNNATC 2 cut(s) 136, 168
BseJI GATNNNNATC 2 cut(s) 136, 168
BseLI CCNNNNNNNGG 1 cut(s) 274
BshFI GGCC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsnI GGCC 1 cut(s) 292
Bsp143I GATC 5 cut(s) 131, 156, 163, 224, 253
BspANI GGCC 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 1 cut(s) 126
BssMI GATC 5 cut(s) 131, 156, 163, 224, 253
Bst6I CTCTTC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 294
BstENI CCTNNNNNAGG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 5 cut(s) 134, 159, 166, 227, 256
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 5 cut(s) 131, 156, 163, 224, 253
BstMWI GCNNNNNNNGC 2 cut(s) 44, 270
BstX2I RGATCY 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 1 cut(s) 292
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 290
CseI GACGC 1 cut(s) 27
CviJI RGCY 6 cut(s) 5, 30, 116, 148, 207, 292
CviKI_1 RGCY 6 cut(s) 5, 30, 116, 148, 207, 292
DdeI CTNAG 1 cut(s) 294
DpnI GATC 5 cut(s) 133, 158, 165, 226, 255
DpnII GATC 5 cut(s) 131, 156, 163, 224, 253
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco72I CACGTG 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 290
Esp3I CGTCTC 1 cut(s) 45
FaiI YATR 2 cut(s) 74, 80
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FbaI TGATCA 1 cut(s) 253
FspBI CTAG 2 cut(s) 50, 99
FspI TGCGCA 1 cut(s) 272
GlaI GCGC 1 cut(s) 272
HaeIII GGCC 1 cut(s) 292
HgaI GACGC 1 cut(s) 27
HhaI GCGC 1 cut(s) 273
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 28, 205
HphI GGTGA 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 11, 218
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 270
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 88
HspAI GCGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 5 cut(s) 131, 156, 163, 224, 253
LpnPI CCDG 3 cut(s) 39, 162, 281
MaeI CTAG 2 cut(s) 50, 99
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 3 cut(s) 19, 84, 173
MalI GATC 5 cut(s) 133, 158, 165, 226, 255
MboI GATC 5 cut(s) 131, 156, 163, 224, 253
MboII GAAGA 4 cut(s) 114, 141, 158, 235
MflI RGATCY 1 cut(s) 131
MluCI AATT 2 cut(s) 106, 213
MnlI CCTC 3 cut(s) 7, 251, 281
MroXI GAANNNNTTC 1 cut(s) 106
MwoI GCNNNNNNNGC 2 cut(s) 44, 270
NdeII GATC 5 cut(s) 131, 156, 163, 224, 253
NmuCI GTSAC 2 cut(s) 84, 173
NsbI TGCGCA 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 106
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 89
PspCI CACGTG 1 cut(s) 89
PspPI GGNCC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 131
Sau3AI GATC 5 cut(s) 131, 156, 163, 224, 253
Sau96I GGNCC 1 cut(s) 290
SetI ASST 5 cut(s) 32, 91, 209, 270, 279
SmlI CTYRAG 2 cut(s) 11, 111
SmoI CTYRAG 2 cut(s) 11, 111
Sse9I AATT 2 cut(s) 106, 213
SspMI CTAG 2 cut(s) 50, 99
TaiI ACGT 1 cut(s) 91
TasI AATT 2 cut(s) 106, 213
TseFI GTSAC 2 cut(s) 84, 173
Tsp45I GTSAC 2 cut(s) 84, 173
TspDTI ATGAA 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 2 cut(s) 106, 213
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 2 cut(s) 50, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.