Rroxscaffold_3G00219440

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004033
Physical Location & Seq
Forward (+)
1561329 .. 1562126
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219440.1

Sequence Viewer

Length: 798 bp
ATGAGGAAGCGAGGTCAATCGGAACGCTGTAGTTTCCGGGCGTTTCCCTTATCGAACACCAAGGGAGGCAAACTCCATCACAAAATCTTCAGGAAGCCCAGCAACCGATTCTCCACATTATCCATAAGGGATTTCTCGGATCTGCCCCAAGAACTGGTAACCAAAATCGGGGCGTCGCTCAGCTACCAGAGCCTGAAAACGGCGTCGAGGGTGTGCAAGTGGTGGTGCGACGCGCTTCGGCCTGCGAGAAAGGCCATGAAGTACAAAGACTGCGAGCATTGGGGAGAGCAGTTCAAGTACGGCCGCGGTGGTTTTCAACGTAGTATACACAATACTCTCAAGATGTTCTTGAAGGCTGCGGAGTACGGATCAACAAGGGCTATGGTGAACGCCGGACTGATATATTGGAAGAGAGGCGAGAACGACAAGGCCTGTGGTTTGTATCGGAGAGCTGCGGAGCTCGGAGACCGGAATGCGCAGTTCGATTTGGGACTTTCATATGTGCTAGCTCAACCTCCAAGTTCAGAGGAAGCTATAAAGTGGTTATATCTCGCTTCTTTTCAAGGCCATGTCCGAGCTCAATACCAACTTGCACATTGTCTGCGTCAGGGTGGGGACATGAAAGAAGCGGCGGGGTGGTTTTTGAGAGCTGCAGAAGGTGGTTATGCACGTGCTATGTATAATGTATCCATGTGCTACAAGGACGGGGAAGGGTTAGTGCAGAGTGATAGCCAAGCAAGAGAGTGGATGAAGTTGGCAGCTGATCGTGGCCACTGTAAAGCTCAATATTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

265

Amino Acids

30.26

Weight (kDa)

9.69

Isoelectric Point (pI)

37.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 223 - 258 3.4e-08 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 477
AccB7I CCANNNNNTGG 1 cut(s) 154
AccI GTMKAC 1 cut(s) 325
AccII CGCG 2 cut(s) 233, 306
AciI CCGC 6 cut(s) 304, 306, 359, 455, 629, 632
AclWI GGATC 2 cut(s) 147, 376
AcoI YGGCCR 2 cut(s) 301, 769
AcuI CTGAAG 1 cut(s) 73
AcvI CACGTG 1 cut(s) 671
AcyI GRCGYC 2 cut(s) 173, 203
AfaI GTAC 3 cut(s) 263, 299, 365
AfiI CCNNNNNNNGG 3 cut(s) 154, 168, 199
AgsI TTSAA 4 cut(s) 295, 317, 352, 563
AluBI AGCT 9 cut(s) 183, 452, 460, 509, 533, 578, 650, 761, 782
AluI AGCT 9 cut(s) 183, 452, 460, 509, 533, 578, 650, 761, 782
Alw21I GWGCWC 2 cut(s) 462, 580
Alw26I GTCTC 1 cut(s) 459
AlwI GGATC 2 cut(s) 147, 376
AlwNI CAGNNNCTG 1 cut(s) 193
AoxI GGCC 6 cut(s) 239, 252, 301, 429, 565, 769
ApeKI GCWGC 4 cut(s) 356, 452, 650, 758
AspLEI GCGC 2 cut(s) 235, 478
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 397
AsuNHI GCTAGC 1 cut(s) 505
BalI TGGCCA 1 cut(s) 771
BanII GRGCYC 2 cut(s) 462, 580
BbrPI CACGTG 1 cut(s) 671
Bbv12I GWGCWC 2 cut(s) 462, 580
BbvI GCAGC 4 cut(s) 343, 439, 637, 770
BccI CCATC 1 cut(s) 84
BceAI ACGGC 2 cut(s) 216, 316
BciVI GTATCC 1 cut(s) 697
BcnI CCSGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 459
BfaI CTAG 1 cut(s) 506
BfmI CTRYAG 2 cut(s) 28, 651
BfuI GTATCC 1 cut(s) 697
BisI GCNGC 6 cut(s) 304, 357, 453, 630, 651, 759
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 6 cut(s) 305, 358, 454, 631, 652, 760
Bme1390I CCNGG 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 38
BmtI GCTAGC 1 cut(s) 509
BplI GAGNNNNNCTC 2 cut(s) 57, 89
Bpu1102I GCTNAGC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 323
BpuMI CCSGG 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 671
BsaHI GRCGYC 2 cut(s) 173, 203
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 60, 304
BsaWI WCCGGW 1 cut(s) 468
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 168, 199
Bse1I ACTGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 60, 304
BseGI GGATG 1 cut(s) 753
BseLI CCNNNNNNNGG 3 cut(s) 154, 168, 199
BseMII CTCAG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 159
BseX3I CGGCCG 1 cut(s) 301
BseXI GCAGC 4 cut(s) 343, 439, 637, 770
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 740
Bsh1236I CGCG 2 cut(s) 233, 306
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 6 cut(s) 241, 254, 303, 431, 567, 771
BsiEI CGRYCG 1 cut(s) 304
BsiHKAI GWGCWC 2 cut(s) 462, 580
BsiSI CCGG 3 cut(s) 37, 393, 469
BslFI GGGAC 2 cut(s) 504, 629
BslI CCNNNNNNNGG 3 cut(s) 154, 168, 199
BsmAI GTCTC 1 cut(s) 459
BsmFI GGGAC 2 cut(s) 504, 629
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 6 cut(s) 241, 254, 303, 431, 567, 771
Bso31I GGTCTC 1 cut(s) 459
Bsp1286I GDGCHC 2 cut(s) 462, 580
Bsp143I GATC 3 cut(s) 139, 368, 763
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 6 cut(s) 304, 306, 359, 455, 629, 632
BspANI GGCC 6 cut(s) 241, 254, 303, 431, 567, 771
BspCNI CTCAG 1 cut(s) 192
BspFNI CGCG 2 cut(s) 233, 306
BspMAI CTGCAG 1 cut(s) 655
BspOI GCTAGC 1 cut(s) 509
BspPI GGATC 2 cut(s) 147, 376
BspTNI GGTCTC 1 cut(s) 459
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 60, 304
BssMI GATC 3 cut(s) 139, 368, 763
BssNAI GTATAC 1 cut(s) 326
BssNI GRCGYC 2 cut(s) 173, 203
BssT1I CCWWGG 1 cut(s) 60
Bst1107I GTATAC 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 776
Bst6I CTCTTC 1 cut(s) 404
BstACI GRCGYC 2 cut(s) 173, 203
BstBAI YACGTR 1 cut(s) 671
BstC8I GCNNGC 3 cut(s) 243, 275, 507
BstDEI CTNAG 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 304
BstEII GGTNACC 1 cut(s) 157
BstF5I GGATG 1 cut(s) 753
BstFNI CGCG 2 cut(s) 233, 306
BstHHI GCGC 2 cut(s) 235, 478
BstKTI GATC 3 cut(s) 142, 371, 766
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 3 cut(s) 139, 368, 763
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 2 cut(s) 189, 251
BstPI GGTNACC 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 2 cut(s) 28, 651
BstUI CGCG 2 cut(s) 233, 306
BstV1I GCAGC 4 cut(s) 343, 439, 637, 770
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BstZ17I GTATAC 1 cut(s) 326
BstZI CGGCCG 1 cut(s) 301
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 6 cut(s) 241, 254, 303, 431, 567, 771
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 1 cut(s) 753
BtsIMutI CAGTG 1 cut(s) 772
Cac8I GCNNGC 3 cut(s) 243, 275, 507
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 2 cut(s) 235, 478
Cfr42I CCGCGG 1 cut(s) 307
CseI GACGC 4 cut(s) 162, 192, 239, 593
Csp6I GTAC 3 cut(s) 262, 298, 364
CspCI CAANNNNNGTGG 2 cut(s) 415, 450
CviAII CATG 4 cut(s) 256, 569, 619, 691
CviQI GTAC 3 cut(s) 262, 298, 364
DdeI CTNAG 1 cut(s) 179
DpnI GATC 3 cut(s) 141, 370, 765
DpnII GATC 3 cut(s) 139, 368, 763
EaeI YGGCCR 2 cut(s) 301, 769
EagI CGGCCG 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Ecl136II GAGCTC 2 cut(s) 460, 578
EclXI CGGCCG 1 cut(s) 301
Eco130I CCWWGG 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 431
Eco24I GRGCYC 2 cut(s) 462, 580
Eco31I GGTCTC 1 cut(s) 459
Eco52I CGGCCG 1 cut(s) 301
Eco53kI GAGCTC 2 cut(s) 460, 578
Eco57I CTGAAG 1 cut(s) 73
Eco72I CACGTG 1 cut(s) 671
Eco91I GGTNACC 1 cut(s) 157
EcoICRI GAGCTC 2 cut(s) 460, 578
EcoO65I GGTNACC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 60
EcoT38I GRGCYC 2 cut(s) 462, 580
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 4 cut(s) 259, 572, 622, 694
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 2 cut(s) 504, 629
FatI CATG 4 cut(s) 255, 568, 618, 690
FauI CCCGC 1 cut(s) 625
FauNDI CATATG 1 cut(s) 499
FblI GTMKAC 1 cut(s) 325
Fnu4HI GCNGC 6 cut(s) 304, 357, 453, 630, 651, 759
FokI GGATG 1 cut(s) 760
FriOI GRGCYC 2 cut(s) 462, 580
Fsp4HI GCNGC 6 cut(s) 304, 357, 453, 630, 651, 759
FspBI CTAG 1 cut(s) 506
FspI TGCGCA 1 cut(s) 477
GlaI GCGC 2 cut(s) 234, 477
GluI GCNGC 6 cut(s) 304, 357, 453, 630, 651, 759
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 6 cut(s) 241, 254, 303, 431, 567, 771
HapII CCGG 3 cut(s) 37, 393, 469
HgaI GACGC 4 cut(s) 162, 192, 239, 593
HhaI GCGC 2 cut(s) 235, 478
Hin1I GRCGYC 2 cut(s) 173, 203
Hin1II CATG 4 cut(s) 259, 572, 622, 694
Hin6I GCGC 2 cut(s) 233, 476
HinP1I GCGC 2 cut(s) 233, 476
HinfI GANTC 1 cut(s) 108
HpaII CCGG 3 cut(s) 37, 393, 469
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 326, 388
Hpy188I TCNGA 6 cut(s) 22, 139, 447, 464, 526, 575
Hpy188III TCNNGA 3 cut(s) 91, 340, 349
Hpy8I GTNNAC 2 cut(s) 326, 388
Hpy99I CGWCG 3 cut(s) 178, 208, 233
HpyAV CCTTC 3 cut(s) 346, 650, 704
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4IV ACGT 2 cut(s) 319, 670
HpyCH4V TGCA 5 cut(s) 216, 593, 653, 668, 721
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 251
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 2 cut(s) 319, 670
Hsp92I GRCGYC 2 cut(s) 173, 203
Hsp92II CATG 4 cut(s) 259, 572, 622, 694
HspAI GCGC 2 cut(s) 233, 476
KspI CCGCGG 1 cut(s) 307
Kzo9I GATC 3 cut(s) 139, 368, 763
LmnI GCTCC 1 cut(s) 457
Lsp1109I GCAGC 4 cut(s) 343, 439, 637, 770
MaeI CTAG 1 cut(s) 506
MaeII ACGT 2 cut(s) 319, 670
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 141, 370, 765
MboI GATC 3 cut(s) 139, 368, 763
MboII GAAGA 2 cut(s) 79, 421
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 462, 580
MlsI TGGCCA 1 cut(s) 771
MluNI TGGCCA 1 cut(s) 771
MnlI CCTC 6 cut(s) 5, 59, 201, 407, 520, 525
Mox20I TGGCCA 1 cut(s) 771
MscI TGGCCA 1 cut(s) 771
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 2 cut(s) 306, 761
MspI CCGG 3 cut(s) 37, 393, 469
MspR9I CCNGG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 478
MvnI CGCG 2 cut(s) 233, 306
MwoI GCNNNNNNNGC 2 cut(s) 189, 251
NciI CCSGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 499
NdeII GATC 3 cut(s) 139, 368, 763
NheI GCTAGC 1 cut(s) 505
NlaIII CATG 4 cut(s) 259, 572, 622, 694
NsbI TGCGCA 1 cut(s) 477
PceI AGGCCT 1 cut(s) 431
PctI GAATGC 1 cut(s) 478
PfeI GAWTC 1 cut(s) 108
PflMI CCANNNNNTGG 1 cut(s) 154
PkrI GCNGC 6 cut(s) 305, 358, 454, 631, 652, 760
PmaCI CACGTG 1 cut(s) 671
PmlI CACGTG 1 cut(s) 671
Ppu21I YACGTR 1 cut(s) 671
Psp124BI GAGCTC 2 cut(s) 462, 580
PspCI CACGTG 1 cut(s) 671
PspEI GGTNACC 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 98
PstI CTGCAG 1 cut(s) 655
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 3 cut(s) 263, 299, 365
RsaNI GTAC 3 cut(s) 262, 298, 364
SacI GAGCTC 2 cut(s) 462, 580
SacII CCGCGG 1 cut(s) 307
SatI GCNGC 6 cut(s) 304, 357, 453, 630, 651, 759
Sau3AI GATC 3 cut(s) 139, 368, 763
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 462, 580
SfcI CTRYAG 2 cut(s) 28, 651
Sfr303I CCGCGG 1 cut(s) 307
SgrBI CCGCGG 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 6 cut(s) 304, 306, 359, 455, 629, 632
SspI AATATT 1 cut(s) 788
SspMI CTAG 1 cut(s) 506
SstI GAGCTC 2 cut(s) 462, 580
StuI AGGCCT 1 cut(s) 431
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 776
TaiI ACGT 2 cut(s) 322, 673
TaqI TCGA 3 cut(s) 53, 206, 483
TatI WGTACW 1 cut(s) 261
TauI GCSGC 2 cut(s) 306, 632
TfiI GAWTC 1 cut(s) 108
TscAI CASTG 1 cut(s) 779
TseI GCWGC 4 cut(s) 356, 452, 650, 758
TspDTI ATGAA 4 cut(s) 272, 486, 635, 764
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 1 cut(s) 779
Van91I CCANNNNNTGG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 325
XspI CTAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.