Rh7DG479400

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004033
Physical Location & Seq
Reverse (-)
68439142 .. 68449658
10517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG479400.1

Sequence Viewer

Length: 993 bp
ATGTTTAATTTGTTTAGCAATCCTACAACCTCAGTTGACGTACATCAGCAAAAATCCAGATACATAAACGGAATGAGGAAGCGAAGTCGATGGGAACGCCGGGAAACTACGGCGTTTCCGTTATTGAACACCAAGCAGGGAGGCGAACTCCATCACAAAATCTTCTGGAAAACCAGCAACCGATTCTCCACATCATCCCCAAGGGATTTCTCGGATCTTCCCCAAGAACTGGTAACCAAAATCGGTGCGTCGCTCAGCTACGGGAACCTAAAAGCGGCGTCGTTGGTGTGCAAGTCGTGGTGCGACGCGCTTCGGCTGGCGAGAAAGGCCATGAAGTACAAAGAATACGAGCGTTGGGGAAAGCAGTTCAAGCAAGGCCTCTGTGGTTTTCTACCTAATATACACAATGCTCTCAAGATGTTCTTGAAGGCTGCGGAGTACGGATCAACAAGGGCTATGGTAAACGCCGGACTGATATATTGGAAGAGAGGCGAGAAAGACAAGGCCTGTGGTTTGTATCGGAGAGCTGCGGAGCTCGGAGACCGGAATGCGCAGTTCAATTTGGGACTTTCATATGTGCTAGTTCAACCTCCTCCAGAGGAAGCTATAAAGTGGTTATCTCTTGCTGCTTTTCAAGGCCATGCCGGAGCTCAATACCAACTTGCACATTGTCTGCGTCAGGGTGGGAACATGGAAGAAGCGGCCGGGTGGTGTTTGAGAGCCGCAGAAGGTGGTTATGTACGTGCTATGTATAATGTATCCATGTGCTACAAGTATGGGGAAGGGTTAGTTCAGTGTGATCACCAAGCAAGAAAGTGGATGAAGTTGGCAGCTGATTGTGGCCACAGTAAAGCTCAAGATTATGTACTTCATCACCAGGAGGCTTTGCTTTCTTATCTTACGAGTGGGAGTGATGTACAAGTTTCGAGTTCATTGACTGTGCTGGCTACTTTGTTGCAGACAAAAGGTTATGTTATTGTATGGCAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

330

Amino Acids

37.31

Weight (kDa)

9.52

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 248 - 282 3.8e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 552
AccB7I CCANNNNNTGG 1 cut(s) 229
AccII CGCG 1 cut(s) 308
AciI CCGC 5 cut(s) 275, 434, 530, 701, 723
AclWI GGATC 2 cut(s) 222, 451
AcoI YGGCCR 2 cut(s) 702, 841
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 6 cut(s) 42, 338, 440, 741, 867, 918
AfiI CCNNNNNNNGG 2 cut(s) 229, 274
AgsI TTSAA 6 cut(s) 127, 370, 427, 559, 587, 635
AjnI CCWGG 1 cut(s) 876
AluBI AGCT 7 cut(s) 258, 527, 535, 605, 650, 833, 854
AluI AGCT 7 cut(s) 258, 527, 535, 605, 650, 833, 854
Alw21I GWGCWC 2 cut(s) 537, 652
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 2 cut(s) 222, 451
AoxI GGCC 6 cut(s) 327, 376, 504, 637, 702, 841
ApeKI GCWGC 4 cut(s) 431, 527, 626, 830
AspLEI GCGC 2 cut(s) 310, 553
AsuC2I CCSGG 2 cut(s) 101, 706
AsuHPI GGTGA 2 cut(s) 794, 866
BalI TGGCCA 1 cut(s) 843
BanII GRGCYC 2 cut(s) 537, 652
Bbv12I GWGCWC 2 cut(s) 537, 652
BbvI GCAGC 4 cut(s) 418, 514, 613, 842
BccI CCATC 2 cut(s) 84, 159
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 878
BciVI GTATCC 1 cut(s) 769
BclI TGATCA 1 cut(s) 799
BcnI CCSGG 2 cut(s) 101, 706
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 1 cut(s) 581
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 7 cut(s) 276, 432, 528, 627, 702, 723, 831
BlpI GCTNAGC 1 cut(s) 254
BlsI GCNGC 7 cut(s) 277, 433, 529, 628, 703, 724, 832
Bme1390I CCNGG 3 cut(s) 101, 706, 878
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 3 cut(s) 101, 706, 878
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BpmI CTGGAG 1 cut(s) 579
Bpu1102I GCTNAGC 1 cut(s) 254
BpuEI CTTGAG 2 cut(s) 398, 840
BpuMI CCSGG 2 cut(s) 101, 706
BsaAI YACGTR 1 cut(s) 743
BsaHI GRCGYC 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 543
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 274
Bse1I ACTGG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 878
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 2 cut(s) 194, 825
BseLI CCNNNNNNNGG 2 cut(s) 229, 274
BseMII CTCAG 2 cut(s) 45, 268
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 582
BseX3I CGGCCG 1 cut(s) 702
BseXI GCAGC 4 cut(s) 418, 514, 613, 842
Bsh1236I CGCG 1 cut(s) 308
Bsh1285I CGRYCG 1 cut(s) 705
BshFI GGCC 6 cut(s) 329, 378, 506, 639, 704, 843
BsiEI CGRYCG 1 cut(s) 705
BsiHKAI GWGCWC 2 cut(s) 537, 652
BsiSI CCGG 5 cut(s) 100, 468, 544, 645, 705
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 2 cut(s) 229, 274
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 6 cut(s) 329, 378, 506, 639, 704, 843
Bso31I GGTCTC 1 cut(s) 534
Bsp1286I GDGCHC 2 cut(s) 537, 652
Bsp1407I TGTACA 1 cut(s) 916
Bsp143I GATC 3 cut(s) 214, 443, 799
Bsp1720I GCTNAGC 1 cut(s) 254
BspACI CCGC 5 cut(s) 275, 434, 530, 701, 723
BspANI GGCC 6 cut(s) 329, 378, 506, 639, 704, 843
BspCNI CTCAG 2 cut(s) 44, 267
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 2 cut(s) 222, 451
BspTNI GGTCTC 1 cut(s) 534
BsrGI TGTACA 1 cut(s) 916
BsrI ACTGG 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 3 cut(s) 214, 443, 799
BssNI GRCGYC 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 878
Bst4CI ACNGT 2 cut(s) 848, 940
Bst6I CTCTTC 1 cut(s) 479
BstACI GRCGYC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 916
BstBAI YACGTR 1 cut(s) 743
BstC8I GCNNGC 2 cut(s) 318, 945
BstDEI CTNAG 2 cut(s) 31, 254
BstEII GGTNACC 1 cut(s) 232
BstF5I GGATG 2 cut(s) 194, 825
BstFNI CGCG 1 cut(s) 308
BstHHI GCGC 2 cut(s) 310, 553
BstKTI GATC 3 cut(s) 217, 446, 802
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 3 cut(s) 214, 443, 799
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 2 cut(s) 326, 370
BstNI CCWGG 1 cut(s) 878
BstPI GGTNACC 1 cut(s) 232
BstSCI CCNGG 3 cut(s) 99, 704, 876
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 4 cut(s) 418, 514, 613, 842
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZI CGGCCG 1 cut(s) 702
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 6 cut(s) 329, 378, 506, 639, 704, 843
BtsCI GGATG 2 cut(s) 194, 825
BtsIMutI CAGTG 1 cut(s) 800
Cac8I GCNNGC 2 cut(s) 318, 945
CfoI GCGC 2 cut(s) 310, 553
CseI GACGC 4 cut(s) 237, 267, 314, 665
Csp6I GTAC 6 cut(s) 41, 337, 439, 740, 866, 917
CspCI CAANNNNNGTGG 2 cut(s) 490, 525
CviAII CATG 4 cut(s) 331, 641, 691, 763
CviQI GTAC 6 cut(s) 41, 337, 439, 740, 866, 917
DdeI CTNAG 2 cut(s) 31, 254
DpnI GATC 3 cut(s) 216, 445, 801
DpnII GATC 3 cut(s) 214, 443, 799
EaeI YGGCCR 2 cut(s) 702, 841
EagI CGGCCG 1 cut(s) 702
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
Ecl136II GAGCTC 2 cut(s) 535, 650
EclXI CGGCCG 1 cut(s) 702
Eco130I CCWWGG 1 cut(s) 200
Eco147I AGGCCT 2 cut(s) 378, 506
Eco24I GRGCYC 2 cut(s) 537, 652
Eco31I GGTCTC 1 cut(s) 534
Eco52I CGGCCG 1 cut(s) 702
Eco53kI GAGCTC 2 cut(s) 535, 650
Eco91I GGTNACC 1 cut(s) 232
EcoICRI GAGCTC 2 cut(s) 535, 650
EcoO65I GGTNACC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 876
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 2 cut(s) 537, 652
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 4 cut(s) 334, 644, 694, 766
FalI AAGNNNNNCTT 2 cut(s) 407, 439
FaqI GGGAC 1 cut(s) 579
FatI CATG 4 cut(s) 330, 640, 690, 762
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 7 cut(s) 276, 432, 528, 627, 702, 723, 831
FokI GGATG 2 cut(s) 181, 832
FriOI GRGCYC 2 cut(s) 537, 652
Fsp4HI GCNGC 7 cut(s) 276, 432, 528, 627, 702, 723, 831
FspBI CTAG 1 cut(s) 581
FspI TGCGCA 1 cut(s) 552
GlaI GCGC 2 cut(s) 309, 552
GluI GCNGC 7 cut(s) 276, 432, 528, 627, 702, 723, 831
GsuI CTGGAG 1 cut(s) 579
HaeIII GGCC 6 cut(s) 329, 378, 506, 639, 704, 843
HapII CCGG 5 cut(s) 100, 468, 544, 645, 705
HgaI GACGC 4 cut(s) 237, 267, 314, 665
HhaI GCGC 2 cut(s) 310, 553
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 4 cut(s) 334, 644, 694, 766
Hin6I GCGC 2 cut(s) 308, 551
HinP1I GCGC 2 cut(s) 308, 551
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HinfI GANTC 1 cut(s) 183
HpaII CCGG 5 cut(s) 100, 468, 544, 645, 705
HphI GGTGA 2 cut(s) 794, 866
Hpy166II GTNNAC 2 cut(s) 37, 463
Hpy188I TCNGA 3 cut(s) 214, 522, 539
Hpy188III TCNNGA 6 cut(s) 57, 166, 415, 424, 596, 857
Hpy8I GTNNAC 2 cut(s) 37, 463
Hpy99I CGWCG 3 cut(s) 253, 283, 308
HpyAV CCTTC 3 cut(s) 421, 722, 776
HpyCH4III ACNGT 2 cut(s) 848, 940
HpyCH4IV ACGT 2 cut(s) 39, 742
HpyCH4V TGCA 3 cut(s) 291, 665, 958
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 370
HpyF3I CTNAG 2 cut(s) 31, 254
HpySE526I ACGT 2 cut(s) 39, 742
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 4 cut(s) 334, 644, 694, 766
HspAI GCGC 2 cut(s) 308, 551
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 3 cut(s) 214, 443, 799
LmnI GCTCC 2 cut(s) 532, 647
Lsp1109I GCAGC 4 cut(s) 418, 514, 613, 842
MaeI CTAG 1 cut(s) 581
MaeII ACGT 2 cut(s) 39, 742
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 216, 445, 801
MboI GATC 3 cut(s) 214, 443, 799
MboII GAAGA 4 cut(s) 154, 209, 496, 707
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 537, 652
MlsI TGGCCA 1 cut(s) 843
MluCI AATT 2 cut(s) 7, 559
MluNI TGGCCA 1 cut(s) 843
MnlI CCTC 9 cut(s) 40, 69, 134, 389, 482, 592, 600, 603, 874
Mox20I TGGCCA 1 cut(s) 843
MscI TGGCCA 1 cut(s) 843
MseI TTAA 2 cut(s) 6, 991
Msp20I TGGCCA 1 cut(s) 843
MspA1I CMGCKG 1 cut(s) 833
MspI CCGG 5 cut(s) 100, 468, 544, 645, 705
MspR9I CCNGG 3 cut(s) 101, 706, 878
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 1 cut(s) 878
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 326, 370
NciI CCSGG 2 cut(s) 101, 706
NdeI CATATG 1 cut(s) 574
NdeII GATC 3 cut(s) 214, 443, 799
NlaIII CATG 4 cut(s) 334, 644, 694, 766
NlaIV GGNNCC 1 cut(s) 266
NsbI TGCGCA 1 cut(s) 552
PceI AGGCCT 2 cut(s) 378, 506
PcsI WCGNNNNNNNCGW 1 cut(s) 116
PctI GAATGC 1 cut(s) 553
PfeI GAWTC 1 cut(s) 183
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 7 cut(s) 277, 433, 529, 628, 703, 724, 832
Ppu21I YACGTR 1 cut(s) 743
Psp124BI GAGCTC 2 cut(s) 537, 652
Psp6I CCWGG 1 cut(s) 876
PspEI GGTNACC 1 cut(s) 232
PspGI CCWGG 1 cut(s) 876
PspN4I GGNNCC 1 cut(s) 266
PsuI RGATCY 1 cut(s) 214
PvuII CAGCTG 1 cut(s) 833
RsaI GTAC 6 cut(s) 42, 338, 440, 741, 867, 918
RsaNI GTAC 6 cut(s) 41, 337, 439, 740, 866, 917
SacI GAGCTC 2 cut(s) 537, 652
SaqAI TTAA 2 cut(s) 6, 991
SatI GCNGC 7 cut(s) 276, 432, 528, 627, 702, 723, 831
Sau3AI GATC 3 cut(s) 214, 443, 799
ScrFI CCNGG 3 cut(s) 101, 706, 878
SduI GDGCHC 2 cut(s) 537, 652
SmlI CTYRAG 2 cut(s) 413, 855
SmoI CTYRAG 2 cut(s) 413, 855
Sse9I AATT 2 cut(s) 7, 559
SseBI AGGCCT 2 cut(s) 378, 506
SsiI CCGC 5 cut(s) 275, 434, 530, 701, 723
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 2 cut(s) 537, 652
StuI AGGCCT 2 cut(s) 378, 506
StyD4I CCNGG 3 cut(s) 99, 704, 876
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 848, 940
TaiI ACGT 2 cut(s) 42, 745
TaqI TCGA 2 cut(s) 88, 926
TasI AATT 2 cut(s) 7, 559
TatI WGTACW 3 cut(s) 336, 865, 916
TauI GCSGC 3 cut(s) 278, 704, 725
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 2 cut(s) 6, 991
Tru9I TTAA 2 cut(s) 6, 991
TscAI CASTG 1 cut(s) 800
TseI GCWGC 4 cut(s) 431, 527, 626, 830
TspDTI ATGAA 5 cut(s) 347, 561, 836, 860, 921
TspGWI ACGGA 3 cut(s) 84, 108, 456
TspRI CASTG 1 cut(s) 800
Van91I CCANNNNNTGG 1 cut(s) 229
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.