RchiOBHm_Chr7g0240871

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004033
Physical Location & Seq
Reverse (-)
66850736 .. 66851563
828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21588

Sequence Viewer

Length: 828 bp
ATGAGGAAGCGAAATCGATGGGAACGCCGGGAAACTACGGCGTTTCCGTTATTGAACACCAAGCAAGGAGGCGAACTCCATCACAAAATCTTCTGGAAAACCAGCAACCGATTCTCCACATCATCCCCAAGGGATTTCTCGGATCTTCCCCAAGAACTGGTAACCAAAATCGGTGCGTCGCTCAGCTACGGCAACCTAAAAGCGGCGTCGTTGGTGTGCAAGTCGTGGTGCGACGCGCTTCGGCCGGCGAGAAAGGCCATGAAGTACAAAGAATACGAGCGTTGGGGAAAGCAGTTCAAGCAAGGCCTCTGTGGTTTTCTACCTAATATACACAATGCTCTCAAGATGTTCTTGAAGGCTGCGGAGTACGGATCAACAAGGGCTATGGTAGACGCCGGACTGATATATTGGAAGAGAGGCGAGAAAGACAAGGCCTGTGATTTGTATCGGAGAGCTGCGGAGCTCGGAGACCGGAATGCGCAGTTCAATTTGGGACTTTCATATGTGCCAGTTCAACCTCCTCCAGAGGAAGCTATAAAGTGGTTATCTCTTGCTGCTTTTCAAGGCCATGCCGGAGCTCAATACCAACTTGCACATTGTCTGCGTCAGGGTGGGAACATGGAAGAAGCGGCCGGGTGGTGTTTGAGAGCCGCAGAAGGTGGTTATGTACGTGCTATGTATAATGTATCCATGTGCTACAAGTATGGGGAAGGGTTAGTTCAGTGTGATCACCAAGCAAGAAAGTGGATGAAGTTGGCAGCTGATTGTGGCCACATTAAAGCTCAAGATTATGTACTTCGTCACCAGAAAGTTTACTCCATCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

275

Amino Acids

31.37

Weight (kDa)

9.56

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 224 - 258 3e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 480
AccB7I CCANNNNNTGG 1 cut(s) 157
AccI GTMKAC 1 cut(s) 390
AccII CGCG 1 cut(s) 236
AciI CCGC 5 cut(s) 203, 362, 458, 629, 651
AclWI GGATC 2 cut(s) 150, 379
AcoI YGGCCR 3 cut(s) 242, 630, 769
AcyI GRCGYC 2 cut(s) 206, 393
AfaI GTAC 4 cut(s) 266, 368, 669, 795
AfiI CCNNNNNNNGG 2 cut(s) 157, 202
AgsI TTSAA 6 cut(s) 55, 298, 355, 487, 515, 563
AluBI AGCT 7 cut(s) 186, 455, 463, 533, 578, 761, 782
AluI AGCT 7 cut(s) 186, 455, 463, 533, 578, 761, 782
Alw21I GWGCWC 2 cut(s) 465, 580
Alw26I GTCTC 1 cut(s) 462
AlwI GGATC 2 cut(s) 150, 379
AoxI GGCC 7 cut(s) 242, 255, 304, 432, 565, 630, 769
ApeKI GCWGC 4 cut(s) 359, 455, 554, 758
AspLEI GCGC 2 cut(s) 238, 481
AsuC2I CCSGG 2 cut(s) 29, 634
AsuHPI GGTGA 2 cut(s) 722, 794
BalI TGGCCA 1 cut(s) 771
BanII GRGCYC 2 cut(s) 465, 580
Bbv12I GWGCWC 2 cut(s) 465, 580
BbvI GCAGC 4 cut(s) 346, 442, 541, 770
BccI CCATC 3 cut(s) 12, 87, 827
BceAI ACGGC 2 cut(s) 54, 205
BciVI GTATCC 1 cut(s) 697
BclI TGATCA 1 cut(s) 727
BcnI CCSGG 2 cut(s) 29, 634
BcoDI GTCTC 1 cut(s) 462
BfuI GTATCC 1 cut(s) 697
BisI GCNGC 7 cut(s) 204, 360, 456, 555, 630, 651, 759
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 7 cut(s) 205, 361, 457, 556, 631, 652, 760
Bme1390I CCNGG 2 cut(s) 29, 634
BmrFI CCNGG 2 cut(s) 29, 634
BplI GAGNNNNNCTC 2 cut(s) 60, 92
BpmI CTGGAG 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 182
BpuEI CTTGAG 2 cut(s) 326, 768
BpuMI CCSGG 2 cut(s) 29, 634
Bsa29I ATCGAT 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 671
BsaBI GATNNNNATC 1 cut(s) 444
BsaHI GRCGYC 2 cut(s) 206, 393
BsaI GGTCTC 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 202
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 162, 509
Bse8I GATNNNNATC 1 cut(s) 444
BseCI ATCGAT 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 122, 753
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 157, 202
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 2 cut(s) 162, 509
BseRI GAGGAG 1 cut(s) 510
BseX3I CGGCCG 2 cut(s) 242, 630
BseXI GCAGC 4 cut(s) 346, 442, 541, 770
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 2 cut(s) 245, 633
BshFI GGCC 7 cut(s) 244, 257, 306, 434, 567, 632, 771
BshVI ATCGAT 1 cut(s) 16
BsiEI CGRYCG 2 cut(s) 245, 633
BsiHKAI GWGCWC 2 cut(s) 465, 580
BsiSI CCGG 6 cut(s) 28, 245, 396, 472, 573, 633
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 157, 202
BsmAI GTCTC 1 cut(s) 462
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 7 cut(s) 244, 257, 306, 434, 567, 632, 771
Bso31I GGTCTC 1 cut(s) 462
Bsp1286I GDGCHC 2 cut(s) 465, 580
Bsp143I GATC 3 cut(s) 142, 371, 727
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 5 cut(s) 203, 362, 458, 629, 651
BspANI GGCC 7 cut(s) 244, 257, 306, 434, 567, 632, 771
BspCNI CTCAG 1 cut(s) 195
BspDI ATCGAT 1 cut(s) 16
BspFNI CGCG 1 cut(s) 236
BspPI GGATC 2 cut(s) 150, 379
BspTNI GGTCTC 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 2 cut(s) 162, 509
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 3 cut(s) 142, 371, 727
BssNI GRCGYC 2 cut(s) 206, 393
BssT1I CCWWGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 2 cut(s) 206, 393
BstBAI YACGTR 1 cut(s) 671
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 182
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 2 cut(s) 122, 753
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 2 cut(s) 238, 481
BstKTI GATC 3 cut(s) 145, 374, 730
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 3 cut(s) 142, 371, 727
BstMCI CGRYCG 2 cut(s) 245, 633
BstMWI GCNNNNNNNGC 2 cut(s) 254, 298
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 27, 632
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 4 cut(s) 346, 442, 541, 770
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BstZI CGGCCG 2 cut(s) 242, 630
Bsu15I ATCGAT 1 cut(s) 16
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 7 cut(s) 244, 257, 306, 434, 567, 632, 771
BsuTUI ATCGAT 1 cut(s) 16
BtsCI GGATG 2 cut(s) 122, 753
BtsIMutI CAGTG 1 cut(s) 728
Cac8I GCNNGC 1 cut(s) 246
CfoI GCGC 2 cut(s) 238, 481
Cfr10I RCCGGY 1 cut(s) 244
ClaI ATCGAT 1 cut(s) 16
CseI GACGC 5 cut(s) 165, 195, 242, 401, 593
Csp6I GTAC 4 cut(s) 265, 367, 668, 794
CviAII CATG 4 cut(s) 259, 569, 619, 691
CviQI GTAC 4 cut(s) 265, 367, 668, 794
DdeI CTNAG 1 cut(s) 182
DpnI GATC 3 cut(s) 144, 373, 729
DpnII GATC 3 cut(s) 142, 371, 727
EaeI YGGCCR 3 cut(s) 242, 630, 769
EagI CGGCCG 2 cut(s) 242, 630
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Ecl136II GAGCTC 2 cut(s) 463, 578
EclXI CGGCCG 2 cut(s) 242, 630
Eco130I CCWWGG 1 cut(s) 128
Eco147I AGGCCT 2 cut(s) 306, 434
Eco24I GRGCYC 2 cut(s) 465, 580
Eco31I GGTCTC 1 cut(s) 462
Eco52I CGGCCG 2 cut(s) 242, 630
Eco53kI GAGCTC 2 cut(s) 463, 578
Eco91I GGTNACC 1 cut(s) 160
EcoICRI GAGCTC 2 cut(s) 463, 578
EcoO65I GGTNACC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 128
EcoT38I GRGCYC 2 cut(s) 465, 580
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 4 cut(s) 262, 572, 622, 694
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FaqI GGGAC 1 cut(s) 507
FatI CATG 4 cut(s) 258, 568, 618, 690
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 727
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 7 cut(s) 204, 360, 456, 555, 630, 651, 759
FokI GGATG 2 cut(s) 109, 760
FriOI GRGCYC 2 cut(s) 465, 580
Fsp4HI GCNGC 7 cut(s) 204, 360, 456, 555, 630, 651, 759
FspI TGCGCA 1 cut(s) 480
GlaI GCGC 2 cut(s) 237, 480
GluI GCNGC 7 cut(s) 204, 360, 456, 555, 630, 651, 759
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 7 cut(s) 244, 257, 306, 434, 567, 632, 771
HapII CCGG 6 cut(s) 28, 245, 396, 472, 573, 633
HgaI GACGC 5 cut(s) 165, 195, 242, 401, 593
HhaI GCGC 2 cut(s) 238, 481
Hin1I GRCGYC 2 cut(s) 206, 393
Hin1II CATG 4 cut(s) 262, 572, 622, 694
Hin6I GCGC 2 cut(s) 236, 479
HinP1I GCGC 2 cut(s) 236, 479
HinfI GANTC 1 cut(s) 111
HpaII CCGG 6 cut(s) 28, 245, 396, 472, 573, 633
HphI GGTGA 2 cut(s) 722, 794
Hpy166II GTNNAC 2 cut(s) 391, 814
Hpy188I TCNGA 3 cut(s) 142, 450, 467
Hpy188III TCNNGA 5 cut(s) 94, 343, 352, 524, 785
Hpy8I GTNNAC 2 cut(s) 391, 814
Hpy99I CGWCG 3 cut(s) 181, 211, 236
HpyAV CCTTC 3 cut(s) 349, 650, 704
HpyCH4IV ACGT 1 cut(s) 670
HpyCH4V TGCA 2 cut(s) 219, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 298
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 670
Hsp92I GRCGYC 2 cut(s) 206, 393
Hsp92II CATG 4 cut(s) 262, 572, 622, 694
HspAI GCGC 2 cut(s) 236, 479
KroI GCCGGC 1 cut(s) 244
KroNI GCCGGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 3 cut(s) 142, 371, 727
LmnI GCTCC 2 cut(s) 460, 575
Lsp1109I GCAGC 4 cut(s) 346, 442, 541, 770
MaeII ACGT 1 cut(s) 670
MaeIII GTNAC 2 cut(s) 160, 800
MalI GATC 3 cut(s) 144, 373, 729
MboI GATC 3 cut(s) 142, 371, 727
MboII GAAGA 4 cut(s) 82, 137, 424, 635
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 2 cut(s) 465, 580
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 1 cut(s) 487
MluNI TGGCCA 1 cut(s) 771
MnlI CCTC 6 cut(s) 62, 317, 410, 520, 528, 531
Mox20I TGGCCA 1 cut(s) 771
MroNI GCCGGC 1 cut(s) 244
MscI TGGCCA 1 cut(s) 771
MseI TTAA 1 cut(s) 777
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 6 cut(s) 28, 245, 396, 472, 573, 633
MspR9I CCNGG 2 cut(s) 29, 634
Mva1269I GAATGC 1 cut(s) 481
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 254, 298
NaeI GCCGGC 1 cut(s) 246
NciI CCSGG 2 cut(s) 29, 634
NdeI CATATG 1 cut(s) 502
NdeII GATC 3 cut(s) 142, 371, 727
NgoMIV GCCGGC 1 cut(s) 244
NlaIII CATG 4 cut(s) 262, 572, 622, 694
NmuCI GTSAC 1 cut(s) 800
NsbI TGCGCA 1 cut(s) 480
PceI AGGCCT 2 cut(s) 306, 434
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 1 cut(s) 481
PdiI GCCGGC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 7 cut(s) 205, 361, 457, 556, 631, 652, 760
Ppu21I YACGTR 1 cut(s) 671
Psp124BI GAGCTC 2 cut(s) 465, 580
PspEI GGTNACC 1 cut(s) 160
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 4 cut(s) 266, 368, 669, 795
RsaNI GTAC 4 cut(s) 265, 367, 668, 794
SacI GAGCTC 2 cut(s) 465, 580
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 7 cut(s) 204, 360, 456, 555, 630, 651, 759
Sau3AI GATC 3 cut(s) 142, 371, 727
ScrFI CCNGG 2 cut(s) 29, 634
SduI GDGCHC 2 cut(s) 465, 580
SmlI CTYRAG 2 cut(s) 341, 783
SmoI CTYRAG 2 cut(s) 341, 783
Sse9I AATT 1 cut(s) 487
SseBI AGGCCT 2 cut(s) 306, 434
SsiI CCGC 5 cut(s) 203, 362, 458, 629, 651
SstI GAGCTC 2 cut(s) 465, 580
StuI AGGCCT 2 cut(s) 306, 434
StyD4I CCNGG 2 cut(s) 27, 632
StyI CCWWGG 1 cut(s) 128
TaiI ACGT 1 cut(s) 673
TaqI TCGA 1 cut(s) 16
TasI AATT 1 cut(s) 487
TatI WGTACW 2 cut(s) 264, 793
TauI GCSGC 3 cut(s) 206, 632, 653
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 1 cut(s) 728
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 4 cut(s) 359, 455, 554, 758
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 3 cut(s) 275, 489, 764
TspGWI ACGGA 2 cut(s) 36, 384
TspRI CASTG 1 cut(s) 728
Van91I CCANNNNNTGG 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.