Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004033

Physical Location & Seq

Genomic Coordinates Forward (+)

10381082 .. 10385115

Gene Structure 4034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00341770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAGAAACTCTCTTTCATGTTTAATGTGCTTGTCCTACTAGTACTTCTGTTATCTATAGTATCATCCAAGATTAGTAGCTACGGAACATCCTTGAGATTAGTTGGAGTTAGAAATAGACAACTTCAATATGCCAACAAGTGTAACGCCGGTGCCCAAAATGATTGTTGTGGCTGTGGAGATCAAGGGAGTAGAGATGAGGGAGGTGAGGGAGGCAATAGCAATATCGGTGGTGGAGGCGGATACGGTGGTGGGGTTGTTGATAAAGGGGGTGGAGGAGGCGGTGGCGGTGGTGGTGGAGGTGGTGGAGGAGGCGGAGGAGGAGGTGGTGGCGCCAGCGGTGGTGGTGATGTGGACATAAACAAACTTCAACCACATTTTGAGCAGGATCGGCTTTTGCCTCGTTTGCTAGCAGTGCAGGTGACCATTCTCGTCACCCGGCCCTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

14.71

Weight (kDa)

8.78

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70590
fragaria_vesca	FvH4_4g05690 FvH4_4g25470
malus_domestica	MD13G1102600.v1.1
prunus_persica	Prupe.1G243200_v2.0.a1
pyrus_communis	pycom13g08970
rosa_chinensis	RchiOBHm_Chr1g0318701 RchiOBHm_Chr4g0432791 RchiOBHm_Chr4g0436601 RchiOBHm_Chr7g0240871
rosa_laevigata	RLG00000000615 RLG00000006811 RLG00000009495
rosa_multiflora	Rmu_sc0002313.1_g000016 Rmu_sc0005234.1_g000002 Rmu_sc0012180.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219440 Rroxscaffold_5G00341770 Rroxscaffold_5G00374240
rosa_rugosa	Rorug03G0346700 Rorug04G0262900 Rorug04G0263000 Rorug07G0339800
rosa_samantha	Rh4AG317000 Rh4BG325300 Rh4DG320400 Rh6DG077200 Rh7AG494400 Rh7BG466100 Rh7CG512600 Rh7DG479400
rosa_wichuraiana	Rw4G027580 Rw7G041820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	409
Acc36I	ACCTGC	1 cut(s)	409
AccB1I	GGYRCC	2 cut(s)	152, 332
AciI	CCGC	5 cut(s)	240, 282, 288, 315, 339
AclWI	GGATC	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	128, 371
AhlI	ACTAGT	1 cut(s)	40
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
AlwI	GGATC	1 cut(s)	396
AoxI	GGCC	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	441
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	4 cut(s)	218, 359, 427, 433
AsuNHI	GCTAGC	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	157
BaeI	ACNNNNGTAYC	2 cut(s)	235, 268
BanI	GGYRCC	2 cut(s)	152, 332
BciVI	GTATCC	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	439
BcuI	ACTAGT	1 cut(s)	40
BfaI	CTAG	2 cut(s)	41, 410
BfmI	CTRYAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	336
BfuAI	ACCTGC	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	236
BmcAI	AGTACT	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	439
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	2 cut(s)	154, 334
BmrFI	CCNGG	1 cut(s)	439
BmtI	GCTAGC	1 cut(s)	413
BpuEI	CTTGAG	1 cut(s)	115
BpuMI	CCSGG	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	333
Bse118I	RCCGGY	1 cut(s)	149
BseGI	GGATG	2 cut(s)	65, 89
BseRI	GAGGAG	4 cut(s)	291, 324, 333, 336
BseSI	GKGCMC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	442
BshNI	GGYRCC	2 cut(s)	152, 332
BsiSI	CCGG	2 cut(s)	150, 439
BsnI	GGCC	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	181, 388
BspACI	CCGC	5 cut(s)	240, 282, 288, 315, 339
BspANI	GGCC	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	154, 334
BspMI	ACCTGC	1 cut(s)	409
BspOI	GCTAGC	1 cut(s)	413
BspPI	GGATC	1 cut(s)	396
BspT107I	GGYRCC	2 cut(s)	152, 332
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssMI	GATC	2 cut(s)	181, 388
BssNI	GRCGYC	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	248
BstACI	GRCGYC	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	337, 411
BstEII	GGTNACC	1 cut(s)	421
BstF5I	GGATG	2 cut(s)	65, 89
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	2 cut(s)	184, 391
BstMBI	GATC	2 cut(s)	181, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	391, 406, 415
BstPI	GGTNACC	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	437
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	157
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	65, 89
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	337, 411
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	4 cut(s)	81, 174, 394, 442
CviKI_1	RGCY	4 cut(s)	81, 174, 394, 442
CviQI	GTAC	1 cut(s)	44
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	2 cut(s)	183, 390
DpnII	GATC	2 cut(s)	181, 388
EciI	GGCGGA	2 cut(s)	255, 330
Eco91I	GGTNACC	1 cut(s)	421
EcoO65I	GGTNACC	1 cut(s)	421
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
FaeI	CATG	1 cut(s)	22
FaiI	YATR	4 cut(s)	20, 59, 132, 359
FatI	CATG	1 cut(s)	18
FokI	GGATG	2 cut(s)	52, 76
FspBI	CTAG	2 cut(s)	41, 410
GlaI	GCGC	1 cut(s)	334
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	2 cut(s)	150, 439
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HpaII	CCGG	2 cut(s)	150, 439
HphI	GGTGA	4 cut(s)	218, 359, 427, 433
Hpy166II	GTNNAC	1 cut(s)	355
Hpy8I	GTNNAC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	391, 406, 415
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	333
KasI	GGCGCC	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	181, 388
LpnPI	CCDG	4 cut(s)	163, 349, 371, 404
MaeI	CTAG	2 cut(s)	41, 410
MaeIII	GTNAC	3 cut(s)	143, 421, 433
MalI	GATC	2 cut(s)	183, 390
MboI	GATC	2 cut(s)	181, 388
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	157
Mly113I	GGCGCC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	85
MseI	TTAA	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	339
MspI	CCGG	2 cut(s)	150, 439
MspR9I	CCNGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	3 cut(s)	391, 406, 415
NarI	GGCGCC	1 cut(s)	333
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	2 cut(s)	181, 388
NheI	GCTAGC	1 cut(s)	409
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	154, 334
NmuCI	GTSAC	2 cut(s)	421, 433
PaqCI	CACCTGC	1 cut(s)	409
PluTI	GGCGCC	1 cut(s)	336
PspEI	GGTNACC	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	154, 334
PspPI	GGNCC	1 cut(s)	441
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	181, 388
Sau96I	GGNCC	1 cut(s)	441
ScaI	AGTACT	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	5 cut(s)	83, 208, 304, 328, 423
SfcI	CTRYAG	1 cut(s)	57
SfoI	GGCGCC	1 cut(s)	334
SgrAI	CRCCGGYG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SpeI	ACTAGT	1 cut(s)	40
SsiI	CCGC	5 cut(s)	240, 282, 288, 315, 339
SspDI	GGCGCC	1 cut(s)	332
SspMI	CTAG	2 cut(s)	41, 410
StyD4I	CCNGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	248
TatI	WGTACW	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	2 cut(s)	421, 433
Tsp45I	GTSAC	2 cut(s)	421, 433
TspDTI	ATGAA	2 cut(s)	7, 17
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	420
XspI	CTAG	2 cut(s)	41, 410
ZrmI	AGTACT	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.