Rh7BG466100

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004033
Physical Location & Seq
Reverse (-)
55158139 .. 55166238
8100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG466100.1

Sequence Viewer

Length: 924 bp
ATGAGGAAGCGAAGTCGATGGGAACGCCGGGAAACTACGGCGTTTCCGTTATTGAACACCAAGCAAGGAGGCGAACTCCATCACAAAATCTTCTGGAAAACCAGCAACCGATTCTCCACATCATCCCCAAGGGATTTCTCGGATCTTCCCCAAGAACTGGTAACCAAAATCGGTGCGTCGCTCAGCTACGGGAACCTAAAAGCGGCGTCGTTGGTGTGCAAGTCGTGGTGCGTCGCGCTTCGGCCGGCGAGAAAGGCCATGAAGTACAAAGAATACGAGCGTTGGGGAATGCAGTTCAAGCAAGGCCTCTGTGGTTTTCTACCTAATATACACAATGCTCTCAAGATGTTCTTGAAGGCTGCGGAGTACGGATCAACAAGGGCTATGGTAAACCCCGGACTGATATATTGGAAGAGAGGCGAGAAAGACAAGGCCTGTGGTTTGTATCGGAGAGCTGCGGAGCTCGGCGACCGGAATGCGCAGTTCAATTTGGGACTTTCATATGTGCTAGTTCAACCTCCAAATCCAGAGGAAGCTATAAAGTGGTTATCTCTTGCTGCTTTTCAAGGCCATGCCGGAGCTCAATACCAACTTGCACATTGTCTGCGTCAGGGCGGGAACATGGAAGAAGCGGCCGGGTGGTGTTTGAGAGCCGCAGAAGGTGGTTATGTACGTGCTATGTATAATGTATCCATGTGCTACAAGTATGGGGAAGGGTTAGTTCAGTGTGATCACCAAGCAAGAAAGTGGATGAAGTTGGCAGCTGATTGTGGCCACAGTAAAGCTCAAGATTATGTACTTCATCACCAGGAGGCTTTGCTTTCTTATCTTACGAGTGGGAGTGATGTACAAGTTTCGAGTTCATTGAGTGTGCTGGCTACTTTGTTGCAGACAAAAGGTTATATTATTGTATGGCAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

307

Amino Acids

34.66

Weight (kDa)

9.51

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sel1 PF08238 225 - 259 3.5e-06 Sel1 repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 480
AccB7I CCANNNNNTGG 1 cut(s) 157
AccII CGCG 1 cut(s) 236
AciI CCGC 6 cut(s) 203, 362, 458, 615, 632, 654
AclWI GGATC 2 cut(s) 150, 379
AcoI YGGCCR 3 cut(s) 242, 633, 772
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 5 cut(s) 266, 368, 672, 798, 849
AfiI CCNNNNNNNGG 2 cut(s) 157, 202
AgsI TTSAA 6 cut(s) 55, 298, 355, 487, 515, 566
AjnI CCWGG 1 cut(s) 807
AluBI AGCT 7 cut(s) 186, 455, 463, 536, 581, 764, 785
AluI AGCT 7 cut(s) 186, 455, 463, 536, 581, 764, 785
Alw21I GWGCWC 2 cut(s) 465, 583
AlwI GGATC 2 cut(s) 150, 379
AoxI GGCC 7 cut(s) 242, 255, 304, 432, 568, 633, 772
ApeKI GCWGC 4 cut(s) 359, 455, 557, 761
AspLEI GCGC 2 cut(s) 238, 481
AsuC2I CCSGG 3 cut(s) 29, 396, 637
AsuHPI GGTGA 2 cut(s) 725, 797
BalI TGGCCA 1 cut(s) 774
BanII GRGCYC 2 cut(s) 465, 583
Bbv12I GWGCWC 2 cut(s) 465, 583
BbvI GCAGC 4 cut(s) 346, 442, 544, 773
BccI CCATC 2 cut(s) 12, 87
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 1 cut(s) 809
BciVI GTATCC 1 cut(s) 700
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 3 cut(s) 29, 396, 637
BfaI CTAG 1 cut(s) 509
BfuI GTATCC 1 cut(s) 700
BisI GCNGC 7 cut(s) 204, 360, 456, 558, 633, 654, 762
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 7 cut(s) 205, 361, 457, 559, 634, 655, 763
Bme1390I CCNGG 4 cut(s) 29, 396, 637, 809
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 4 cut(s) 29, 396, 637, 809
BplI GAGNNNNNCTC 2 cut(s) 60, 92
Bpu1102I GCTNAGC 1 cut(s) 182
BpuEI CTTGAG 2 cut(s) 326, 771
BpuMI CCSGG 3 cut(s) 29, 396, 637
BsaAI YACGTR 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 128, 394
BsaWI WCCGGW 1 cut(s) 471
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 202
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 2 cut(s) 128, 394
BseGI GGATG 2 cut(s) 122, 756
BseLI CCNNNNNNNGG 2 cut(s) 157, 202
BseMII CTCAG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 162
BseX3I CGGCCG 2 cut(s) 242, 633
BseXI GCAGC 4 cut(s) 346, 442, 544, 773
Bsh1236I CGCG 1 cut(s) 236
Bsh1285I CGRYCG 3 cut(s) 245, 472, 636
BshFI GGCC 7 cut(s) 244, 257, 306, 434, 570, 635, 774
BsiEI CGRYCG 3 cut(s) 245, 472, 636
BsiHKAI GWGCWC 2 cut(s) 465, 583
BsiSI CCGG 6 cut(s) 28, 245, 396, 472, 576, 636
BslFI GGGAC 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 157, 202
BsmFI GGGAC 1 cut(s) 507
BsmI GAATGC 2 cut(s) 294, 481
BsnI GGCC 7 cut(s) 244, 257, 306, 434, 570, 635, 774
Bsp1286I GDGCHC 2 cut(s) 465, 583
Bsp1407I TGTACA 1 cut(s) 847
Bsp143I GATC 3 cut(s) 142, 371, 730
Bsp1720I GCTNAGC 1 cut(s) 182
BspACI CCGC 6 cut(s) 203, 362, 458, 615, 632, 654
BspANI GGCC 7 cut(s) 244, 257, 306, 434, 570, 635, 774
BspCNI CTCAG 1 cut(s) 195
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 194
BspPI GGATC 2 cut(s) 150, 379
BsrFI RCCGGY 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 847
BsrI ACTGG 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 2 cut(s) 128, 394
BssMI GATC 3 cut(s) 142, 371, 730
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 1 cut(s) 779
Bst6I CTCTTC 1 cut(s) 407
BstACI GRCGYC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 847
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 246, 876
BstDEI CTNAG 1 cut(s) 182
BstEII GGTNACC 1 cut(s) 160
BstF5I GGATG 2 cut(s) 122, 756
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 2 cut(s) 238, 481
BstKTI GATC 3 cut(s) 145, 374, 733
BstMBI GATC 3 cut(s) 142, 371, 730
BstMCI CGRYCG 3 cut(s) 245, 472, 636
BstMWI GCNNNNNNNGC 2 cut(s) 254, 298
BstNI CCWGG 1 cut(s) 809
BstPI GGTNACC 1 cut(s) 160
BstSCI CCNGG 4 cut(s) 27, 394, 635, 807
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 4 cut(s) 346, 442, 544, 773
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BstZI CGGCCG 2 cut(s) 242, 633
BsuI GTATCC 1 cut(s) 700
BsuRI GGCC 7 cut(s) 244, 257, 306, 434, 570, 635, 774
BtsCI GGATG 2 cut(s) 122, 756
BtsIMutI CAGTG 1 cut(s) 731
Cac8I GCNNGC 2 cut(s) 246, 876
CfoI GCGC 2 cut(s) 238, 481
Cfr10I RCCGGY 1 cut(s) 244
CseI GACGC 4 cut(s) 165, 195, 220, 596
Csp6I GTAC 5 cut(s) 265, 367, 671, 797, 848
CspCI CAANNNNNGTGG 2 cut(s) 418, 453
CviAII CATG 4 cut(s) 259, 572, 622, 694
CviQI GTAC 5 cut(s) 265, 367, 671, 797, 848
DdeI CTNAG 1 cut(s) 182
DpnI GATC 3 cut(s) 144, 373, 732
DpnII GATC 3 cut(s) 142, 371, 730
EaeI YGGCCR 3 cut(s) 242, 633, 772
EagI CGGCCG 2 cut(s) 242, 633
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Ecl136II GAGCTC 2 cut(s) 463, 581
EclXI CGGCCG 2 cut(s) 242, 633
Eco130I CCWWGG 1 cut(s) 128
Eco147I AGGCCT 2 cut(s) 306, 434
Eco24I GRGCYC 2 cut(s) 465, 583
Eco52I CGGCCG 2 cut(s) 242, 633
Eco53kI GAGCTC 2 cut(s) 463, 581
Eco91I GGTNACC 1 cut(s) 160
EcoICRI GAGCTC 2 cut(s) 463, 581
EcoO65I GGTNACC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 807
EcoT14I CCWWGG 1 cut(s) 128
EcoT38I GRGCYC 2 cut(s) 465, 583
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 4 cut(s) 262, 575, 625, 697
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FaqI GGGAC 1 cut(s) 507
FatI CATG 4 cut(s) 258, 571, 621, 693
FauI CCCGC 1 cut(s) 608
FauNDI CATATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 7 cut(s) 204, 360, 456, 558, 633, 654, 762
FokI GGATG 2 cut(s) 109, 763
FriOI GRGCYC 2 cut(s) 465, 583
Fsp4HI GCNGC 7 cut(s) 204, 360, 456, 558, 633, 654, 762
FspBI CTAG 1 cut(s) 509
FspI TGCGCA 1 cut(s) 480
GlaI GCGC 2 cut(s) 237, 480
GluI GCNGC 7 cut(s) 204, 360, 456, 558, 633, 654, 762
HaeIII GGCC 7 cut(s) 244, 257, 306, 434, 570, 635, 774
HapII CCGG 6 cut(s) 28, 245, 396, 472, 576, 636
HgaI GACGC 4 cut(s) 165, 195, 220, 596
HhaI GCGC 2 cut(s) 238, 481
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 4 cut(s) 262, 575, 625, 697
Hin6I GCGC 2 cut(s) 236, 479
HinP1I GCGC 2 cut(s) 236, 479
HinfI GANTC 1 cut(s) 111
HpaII CCGG 6 cut(s) 28, 245, 396, 472, 576, 636
HphI GGTGA 2 cut(s) 725, 797
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 142, 450
Hpy188III TCNNGA 5 cut(s) 94, 343, 352, 527, 788
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 3 cut(s) 181, 211, 236
HpyAV CCTTC 3 cut(s) 349, 653, 707
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 4 cut(s) 219, 292, 596, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 298
HpyF3I CTNAG 1 cut(s) 182
HpySE526I ACGT 1 cut(s) 673
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 4 cut(s) 262, 575, 625, 697
HspAI GCGC 2 cut(s) 236, 479
KroI GCCGGC 1 cut(s) 244
KroNI GCCGGC 1 cut(s) 246
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 3 cut(s) 142, 371, 730
LmnI GCTCC 2 cut(s) 460, 578
Lsp1109I GCAGC 4 cut(s) 346, 442, 544, 773
MaeI CTAG 1 cut(s) 509
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 1 cut(s) 160
MalI GATC 3 cut(s) 144, 373, 732
MboI GATC 3 cut(s) 142, 371, 730
MboII GAAGA 4 cut(s) 82, 137, 424, 638
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 2 cut(s) 465, 583
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 1 cut(s) 487
MluNI TGGCCA 1 cut(s) 774
MnlI CCTC 6 cut(s) 62, 317, 410, 523, 528, 805
Mox20I TGGCCA 1 cut(s) 774
MroNI GCCGGC 1 cut(s) 244
MscI TGGCCA 1 cut(s) 774
MseI TTAA 1 cut(s) 922
Msp20I TGGCCA 1 cut(s) 774
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 6 cut(s) 28, 245, 396, 472, 576, 636
MspR9I CCNGG 4 cut(s) 29, 396, 637, 809
Mva1269I GAATGC 2 cut(s) 294, 481
MvaI CCWGG 1 cut(s) 809
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 254, 298
NaeI GCCGGC 1 cut(s) 246
NciI CCSGG 3 cut(s) 29, 396, 637
NdeI CATATG 1 cut(s) 502
NdeII GATC 3 cut(s) 142, 371, 730
NgoMIV GCCGGC 1 cut(s) 244
NlaIII CATG 4 cut(s) 262, 575, 625, 697
NlaIV GGNNCC 1 cut(s) 194
NmeAIII GCCGAG 1 cut(s) 444
NsbI TGCGCA 1 cut(s) 480
PceI AGGCCT 2 cut(s) 306, 434
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 2 cut(s) 294, 481
PdiI GCCGGC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 7 cut(s) 205, 361, 457, 559, 634, 655, 763
Ppu21I YACGTR 1 cut(s) 674
Psp124BI GAGCTC 2 cut(s) 465, 583
Psp6I CCWGG 1 cut(s) 807
PspEI GGTNACC 1 cut(s) 160
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 1 cut(s) 194
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 5 cut(s) 266, 368, 672, 798, 849
RsaNI GTAC 5 cut(s) 265, 367, 671, 797, 848
SacI GAGCTC 2 cut(s) 465, 583
SaqAI TTAA 1 cut(s) 922
SatI GCNGC 7 cut(s) 204, 360, 456, 558, 633, 654, 762
Sau3AI GATC 3 cut(s) 142, 371, 730
ScrFI CCNGG 4 cut(s) 29, 396, 637, 809
SduI GDGCHC 2 cut(s) 465, 583
SmlI CTYRAG 2 cut(s) 341, 786
SmoI CTYRAG 2 cut(s) 341, 786
Sse9I AATT 1 cut(s) 487
SseBI AGGCCT 2 cut(s) 306, 434
SsiI CCGC 6 cut(s) 203, 362, 458, 615, 632, 654
SspMI CTAG 1 cut(s) 509
SstI GAGCTC 2 cut(s) 465, 583
StuI AGGCCT 2 cut(s) 306, 434
StyD4I CCNGG 4 cut(s) 27, 394, 635, 807
StyI CCWWGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 779
TaiI ACGT 1 cut(s) 676
TaqI TCGA 2 cut(s) 16, 857
TasI AATT 1 cut(s) 487
TatI WGTACW 3 cut(s) 264, 796, 847
TauI GCSGC 3 cut(s) 206, 635, 656
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 922
Tru9I TTAA 1 cut(s) 922
TscAI CASTG 1 cut(s) 731
TseI GCWGC 4 cut(s) 359, 455, 557, 761
TspDTI ATGAA 5 cut(s) 275, 489, 767, 791, 852
TspGWI ACGGA 2 cut(s) 36, 384
TspRI CASTG 1 cut(s) 731
Van91I CCANNNNNTGG 1 cut(s) 157
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.