f-box protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G70590 |
| fragaria_vesca | FvH4_4g05690 FvH4_4g25470 |
| malus_domestica | MD13G1102600.v1.1 |
| prunus_persica | Prupe.1G243200_v2.0.a1 |
| pyrus_communis | pycom13g08970 |
| rosa_chinensis | RchiOBHm_Chr1g0318701 RchiOBHm_Chr4g0432791 RchiOBHm_Chr4g0436601 RchiOBHm_Chr7g0240871 |
| rosa_laevigata | RLG00000000615 RLG00000006811 RLG00000009495 |
| rosa_multiflora | Rmu_sc0002313.1_g000016 Rmu_sc0005234.1_g000002 Rmu_sc0012180.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00219440 Rroxscaffold_5G00341770 Rroxscaffold_5G00374240 |
| rosa_rugosa | Rorug03G0346700 Rorug04G0262900 Rorug04G0263000 Rorug07G0339800 |
| rosa_samantha | Rh4AG317000 Rh4BG325300 Rh4DG320400 Rh6DG077200 Rh7AG494400 Rh7BG466100 Rh7CG512600 Rh7DG479400 |
| rosa_wichuraiana | Rw4G027580 Rw7G041820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 461 |
| AccBSI | CCGCTC | 1 cut(s) | 239 |
| AccI | GTMKAC | 2 cut(s) | 882, 990 |
| AccII | CGCG | 4 cut(s) | 168, 374, 389, 763 |
| AciI | CCGC | 5 cut(s) | 239, 281, 319, 389, 671 |
| AcoI | YGGCCR | 5 cut(s) | 23, 40, 278, 331, 640 |
| AcsI | RAATTY | 2 cut(s) | 522, 743 |
| AcuI | CTGAAG | 2 cut(s) | 401, 876 |
| AcvI | CACGTG | 1 cut(s) | 968 |
| AcyI | GRCGYC | 1 cut(s) | 242 |
| AfaI | GTAC | 4 cut(s) | 188, 266, 614, 722 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 238, 340, 810, 906, 907 |
| AflIII | ACRYGT | 1 cut(s) | 372 |
| AgsI | TTSAA | 5 cut(s) | 156, 325, 542, 688, 947 |
| AjiI | CACGTC | 1 cut(s) | 54 |
| AjnI | CCWGG | 3 cut(s) | 25, 489, 498 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 500, 532 |
| AleI | CACNNNNGTG | 1 cut(s) | 642 |
| AluBI | AGCT | 9 cut(s) | 97, 482, 563, 619, 692, 824, 875, 923, 952 |
| AluI | AGCT | 9 cut(s) | 97, 482, 563, 619, 692, 824, 875, 923, 952 |
| Alw21I | GWGCWC | 2 cut(s) | 74, 99 |
| Alw26I | GTCTC | 2 cut(s) | 280, 489 |
| Ama87I | CYCGRG | 1 cut(s) | 900 |
| AoxI | GGCC | 9 cut(s) | 23, 28, 40, 177, 278, 331, 445, 595, 640 |
| ApeKI | GCWGC | 4 cut(s) | 482, 692, 765, 800 |
| ApoI | RAATTY | 2 cut(s) | 522, 743 |
| AspLEI | GCGC | 3 cut(s) | 389, 763, 765 |
| AspS9I | GGNCC | 4 cut(s) | 178, 343, 399, 595 |
| AsuC2I | CCSGG | 1 cut(s) | 424 |
| AvaI | CYCGRG | 1 cut(s) | 900 |
| AvaII | GGWCC | 2 cut(s) | 343, 399 |
| BaeGI | GKGCMC | 2 cut(s) | 610, 816 |
| BalI | TGGCCA | 1 cut(s) | 25 |
| BanII | GRGCYC | 1 cut(s) | 99 |
| BauI | CACGAG | 1 cut(s) | 92 |
| BbrPI | CACGTG | 1 cut(s) | 968 |
| Bbv12I | GWGCWC | 2 cut(s) | 74, 99 |
| BbvI | GCAGC | 4 cut(s) | 469, 679, 777, 812 |
| BccI | CCATC | 1 cut(s) | 672 |
| BceAI | ACGGC | 5 cut(s) | 27, 169, 346, 627, 655 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 101, 135 |
| BciT130I | CCWGG | 3 cut(s) | 27, 491, 500 |
| BcnI | CCSGG | 1 cut(s) | 424 |
| BcoDI | GTCTC | 2 cut(s) | 280, 489 |
| BfmI | CTRYAG | 3 cut(s) | 483, 693, 876 |
| BisI | GCNGC | 8 cut(s) | 240, 281, 390, 483, 672, 693, 766, 801 |
| BlpI | GCTNAGC | 1 cut(s) | 218 |
| BlsI | GCNGC | 8 cut(s) | 241, 282, 391, 484, 673, 694, 767, 802 |
| Bme1390I | CCNGG | 4 cut(s) | 27, 424, 491, 500 |
| Bme18I | GGWCC | 2 cut(s) | 343, 399 |
| BmeT110I | CYCGRG | 1 cut(s) | 900 |
| BmgBI | CACGTC | 1 cut(s) | 54 |
| BmgT120I | GGNCC | 4 cut(s) | 178, 343, 399, 595 |
| BmiI | GGNNCC | 3 cut(s) | 344, 400, 401 |
| BmrFI | CCNGG | 4 cut(s) | 27, 424, 491, 500 |
| BmrI | ACTGGG | 2 cut(s) | 445, 604 |
| BmsI | GCATC | 6 cut(s) | 149, 285, 409, 593, 643, 926 |
| BmuI | ACTGGG | 2 cut(s) | 445, 604 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 218 |
| BpuEI | CTTGAG | 1 cut(s) | 434 |
| BpuMI | CCSGG | 1 cut(s) | 424 |
| BsaAI | YACGTR | 1 cut(s) | 968 |
| BsaHI | GRCGYC | 1 cut(s) | 242 |
| BsaI | GGTCTC | 1 cut(s) | 489 |
| BsaJI | CCNNGG | 5 cut(s) | 334, 405, 490, 643, 901 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 238, 340, 810, 906, 907 |
| Bse1I | ACTGG | 2 cut(s) | 440, 610 |
| Bse3DI | GCAATG | 1 cut(s) | 769 |
| BseBI | CCWGG | 3 cut(s) | 27, 491, 500 |
| BseDI | CCNNGG | 5 cut(s) | 334, 405, 490, 643, 901 |
| BseGI | GGATG | 4 cut(s) | 424, 584, 795, 940 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 238, 340, 810, 906, 907 |
| BseMI | GCAATG | 1 cut(s) | 769 |
| BseMII | CTCAG | 3 cut(s) | 209, 247, 275 |
| BseNI | ACTGG | 2 cut(s) | 440, 610 |
| BsePI | GCGCGC | 1 cut(s) | 761 |
| BseRI | GAGGAG | 1 cut(s) | 150 |
| BseSI | GKGCMC | 2 cut(s) | 610, 816 |
| BseX3I | CGGCCG | 3 cut(s) | 278, 331, 640 |
| BseXI | GCAGC | 4 cut(s) | 469, 679, 777, 812 |
| BseYI | CCCAGC | 1 cut(s) | 503 |
| Bsh1236I | CGCG | 4 cut(s) | 168, 374, 389, 763 |
| Bsh1285I | CGRYCG | 6 cut(s) | 35, 166, 281, 334, 643, 808 |
| BshFI | GGCC | 9 cut(s) | 25, 30, 42, 179, 280, 333, 447, 597, 642 |
| BsiEI | CGRYCG | 6 cut(s) | 35, 166, 281, 334, 643, 808 |
| BsiHKAI | GWGCWC | 2 cut(s) | 74, 99 |
| BsiHKCI | CYCGRG | 1 cut(s) | 900 |
| BsiSI | CCGG | 2 cut(s) | 129, 423 |
| BsiWI | CGTACG | 1 cut(s) | 186 |
| BslFI | GGGAC | 1 cut(s) | 385 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 238, 340, 810, 906, 907 |
| BsmAI | GTCTC | 2 cut(s) | 280, 489 |
| BsmFI | GGGAC | 1 cut(s) | 385 |
| BsnI | GGCC | 9 cut(s) | 25, 30, 42, 179, 280, 333, 447, 597, 642 |
| Bso31I | GGTCTC | 1 cut(s) | 489 |
| BsoBI | CYCGRG | 1 cut(s) | 900 |
| Bsp1286I | GDGCHC | 4 cut(s) | 74, 99, 610, 816 |
| Bsp1407I | TGTACA | 1 cut(s) | 720 |
| Bsp143I | GATC | 3 cut(s) | 32, 652, 805 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 218 |
| Bsp19I | CCATGG | 1 cut(s) | 405 |
| Bsp68I | TCGCGA | 1 cut(s) | 168 |
| BspACI | CCGC | 5 cut(s) | 239, 281, 319, 389, 671 |
| BspANI | GGCC | 9 cut(s) | 25, 30, 42, 179, 280, 333, 447, 597, 642 |
| BspCNI | CTCAG | 3 cut(s) | 210, 246, 276 |
| BspFNI | CGCG | 4 cut(s) | 168, 374, 389, 763 |
| BspLI | GGNNCC | 3 cut(s) | 344, 400, 401 |
| BspMAI | CTGCAG | 2 cut(s) | 487, 697 |
| BspTNI | GGTCTC | 1 cut(s) | 489 |
| BsrBI | CCGCTC | 1 cut(s) | 239 |
| BsrDI | GCAATG | 1 cut(s) | 769 |
| BsrGI | TGTACA | 1 cut(s) | 720 |
| BsrI | ACTGG | 2 cut(s) | 440, 610 |
| BssECI | CCNNGG | 5 cut(s) | 334, 405, 490, 643, 901 |
| BssHII | GCGCGC | 1 cut(s) | 761 |
| BssMI | GATC | 3 cut(s) | 32, 652, 805 |
| BssNI | GRCGYC | 1 cut(s) | 242 |
| BssSI | CACGAG | 1 cut(s) | 92 |
| BssT1I | CCWWGG | 1 cut(s) | 405 |
| Bst2BI | CACGAG | 1 cut(s) | 92 |
| Bst2UI | CCWGG | 3 cut(s) | 27, 491, 500 |
| Bst4CI | ACNGT | 3 cut(s) | 164, 735, 818 |
| Bst6I | CTCTTC | 1 cut(s) | 788 |
| BstACI | GRCGYC | 1 cut(s) | 242 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 771 |
| BstAUI | TGTACA | 1 cut(s) | 720 |
| BstBAI | YACGTR | 1 cut(s) | 968 |
| BstC8I | GCNNGC | 4 cut(s) | 621, 714, 763, 1002 |
| BstDEI | CTNAG | 4 cut(s) | 75, 218, 233, 284 |
| BstDSI | CCRYGG | 2 cut(s) | 405, 643 |
| BstF5I | GGATG | 4 cut(s) | 424, 584, 795, 940 |
| BstFNI | CGCG | 4 cut(s) | 168, 374, 389, 763 |
| BstHHI | GCGC | 3 cut(s) | 389, 763, 765 |
| BstKTI | GATC | 3 cut(s) | 35, 655, 808 |
| BstMAI | GTCTC | 2 cut(s) | 280, 489 |
| BstMBI | GATC | 3 cut(s) | 32, 652, 805 |
| BstMCI | CGRYCG | 6 cut(s) | 35, 166, 281, 334, 643, 808 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 94, 248, 325, 371, 771, 1006 |
| BstNI | CCWGG | 3 cut(s) | 27, 491, 500 |
| BstSCI | CCNGG | 4 cut(s) | 25, 422, 489, 498 |
| BstSFI | CTRYAG | 3 cut(s) | 483, 693, 876 |
| BstSLI | GKGCMC | 2 cut(s) | 610, 816 |
| BstUI | CGCG | 4 cut(s) | 168, 374, 389, 763 |
| BstV1I | GCAGC | 4 cut(s) | 469, 679, 777, 812 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 412 |
| BstZI | CGGCCG | 3 cut(s) | 278, 331, 640 |
| BsuRI | GGCC | 9 cut(s) | 25, 30, 42, 179, 280, 333, 447, 597, 642 |
| BtgI | CCRYGG | 2 cut(s) | 405, 643 |
| BtgZI | GCGATG | 1 cut(s) | 308 |
| BtrI | CACGTC | 1 cut(s) | 54 |
| BtsCI | GGATG | 4 cut(s) | 424, 584, 795, 940 |
| BtsIMutI | CAGTG | 1 cut(s) | 731 |
| BtuMI | TCGCGA | 1 cut(s) | 168 |
| Cac8I | GCNNGC | 4 cut(s) | 621, 714, 763, 1002 |
| CfoI | GCGC | 3 cut(s) | 389, 763, 765 |
| Cfr13I | GGNCC | 4 cut(s) | 178, 343, 399, 595 |
| CseI | GACGC | 2 cut(s) | 231, 380 |
| Csp6I | GTAC | 4 cut(s) | 187, 265, 613, 721 |
| CviAII | CATG | 7 cut(s) | 21, 355, 406, 581, 718, 836, 926 |
| CviQI | GTAC | 4 cut(s) | 187, 265, 613, 721 |
| DdeI | CTNAG | 4 cut(s) | 75, 218, 233, 284 |
| DpnI | GATC | 3 cut(s) | 34, 654, 807 |
| DpnII | GATC | 3 cut(s) | 32, 652, 805 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 461 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 461 |
| EaeI | YGGCCR | 5 cut(s) | 23, 40, 278, 331, 640 |
| EagI | CGGCCG | 3 cut(s) | 278, 331, 640 |
| Eam1104I | CTCTTC | 1 cut(s) | 788 |
| EarI | CTCTTC | 1 cut(s) | 788 |
| Ecl136II | GAGCTC | 1 cut(s) | 97 |
| EclXI | CGGCCG | 3 cut(s) | 278, 331, 640 |
| Eco130I | CCWWGG | 1 cut(s) | 405 |
| Eco147I | AGGCCT | 1 cut(s) | 447 |
| Eco24I | GRGCYC | 1 cut(s) | 99 |
| Eco31I | GGTCTC | 1 cut(s) | 489 |
| Eco47I | GGWCC | 2 cut(s) | 343, 399 |
| Eco52I | CGGCCG | 3 cut(s) | 278, 331, 640 |
| Eco53kI | GAGCTC | 1 cut(s) | 97 |
| Eco57I | CTGAAG | 2 cut(s) | 401, 876 |
| Eco72I | CACGTG | 1 cut(s) | 968 |
| Eco88I | CYCGRG | 1 cut(s) | 900 |
| EcoICRI | GAGCTC | 1 cut(s) | 97 |
| EcoO109I | RGGNCCY | 1 cut(s) | 399 |
| EcoRII | CCWGG | 3 cut(s) | 25, 489, 498 |
| EcoT14I | CCWWGG | 1 cut(s) | 405 |
| EcoT22I | ATGCAT | 1 cut(s) | 586 |
| EcoT38I | GRGCYC | 1 cut(s) | 99 |
| ErhI | CCWWGG | 1 cut(s) | 405 |
| FaeI | CATG | 7 cut(s) | 24, 358, 409, 584, 721, 839, 929 |
| FaqI | GGGAC | 1 cut(s) | 385 |
| FatI | CATG | 7 cut(s) | 20, 354, 405, 580, 717, 835, 925 |
| FblI | GTMKAC | 2 cut(s) | 882, 990 |
| Fnu4HI | GCNGC | 8 cut(s) | 240, 281, 390, 483, 672, 693, 766, 801 |
| FokI | GGATG | 4 cut(s) | 431, 571, 802, 947 |
| FriOI | GRGCYC | 1 cut(s) | 99 |
| Fsp4HI | GCNGC | 8 cut(s) | 240, 281, 390, 483, 672, 693, 766, 801 |
| GlaI | GCGC | 3 cut(s) | 388, 762, 764 |
| GluI | GCNGC | 8 cut(s) | 240, 281, 390, 483, 672, 693, 766, 801 |
| GsaI | CCCAGC | 1 cut(s) | 507 |
| HaeIII | GGCC | 9 cut(s) | 25, 30, 42, 179, 280, 333, 447, 597, 642 |
| HapII | CCGG | 2 cut(s) | 129, 423 |
| HgaI | GACGC | 2 cut(s) | 231, 380 |
| HhaI | GCGC | 3 cut(s) | 389, 763, 765 |
| Hin1I | GRCGYC | 1 cut(s) | 242 |
| Hin1II | CATG | 7 cut(s) | 24, 358, 409, 584, 721, 839, 929 |
| Hin6I | GCGC | 3 cut(s) | 387, 761, 763 |
| HinP1I | GCGC | 3 cut(s) | 387, 761, 763 |
| HincII | GTYRAC | 1 cut(s) | 991 |
| HindII | GTYRAC | 1 cut(s) | 991 |
| HinfI | GANTC | 2 cut(s) | 840, 940 |
| HpaII | CCGG | 2 cut(s) | 129, 423 |
| Hpy166II | GTNNAC | 2 cut(s) | 883, 991 |
| Hpy188I | TCNGA | 5 cut(s) | 236, 381, 477, 856, 958 |
| Hpy188III | TCNNGA | 3 cut(s) | 167, 368, 1020 |
| Hpy8I | GTNNAC | 2 cut(s) | 883, 991 |
| Hpy99I | CGWCG | 5 cut(s) | 48, 109, 148, 247, 374 |
| HpyAV | CCTTC | 4 cut(s) | 376, 692, 746, 851 |
| HpyCH4III | ACNGT | 3 cut(s) | 164, 735, 818 |
| HpyCH4IV | ACGT | 2 cut(s) | 53, 967 |
| HpyCH4V | TGCA | 8 cut(s) | 485, 513, 535, 584, 623, 634, 695, 917 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 94, 248, 325, 371, 771, 1006 |
| HpyF3I | CTNAG | 4 cut(s) | 75, 218, 233, 284 |
| HpySE526I | ACGT | 2 cut(s) | 53, 967 |
| Hsp92I | GRCGYC | 1 cut(s) | 242 |
| Hsp92II | CATG | 7 cut(s) | 24, 358, 409, 584, 721, 839, 929 |
| HspAI | GCGC | 3 cut(s) | 387, 761, 763 |
| KflI | GGGWCCC | 1 cut(s) | 399 |
| Kzo9I | GATC | 3 cut(s) | 32, 652, 805 |
| LmnI | GCTCC | 3 cut(s) | 69, 102, 137 |
| Lsp1109I | GCAGC | 4 cut(s) | 469, 679, 777, 812 |
| LweI | GCATC | 6 cut(s) | 149, 285, 409, 593, 643, 926 |
| MaeII | ACGT | 2 cut(s) | 53, 967 |
| MaeIII | GTNAC | 1 cut(s) | 656 |
| MalI | GATC | 3 cut(s) | 34, 654, 807 |
| MbiI | CCGCTC | 1 cut(s) | 239 |
| MboI | GATC | 3 cut(s) | 32, 652, 805 |
| MboII | GAAGA | 4 cut(s) | 144, 805, 935, 1008 |
| MhlI | GDGCHC | 4 cut(s) | 74, 99, 610, 816 |
| MlsI | TGGCCA | 1 cut(s) | 25 |
| MluCI | AATT | 4 cut(s) | 191, 514, 522, 743 |
| MluI | ACGCGT | 1 cut(s) | 372 |
| MluNI | TGGCCA | 1 cut(s) | 25 |
| MlyI | GAGTC | 1 cut(s) | 834 |
| Mox20I | TGGCCA | 1 cut(s) | 25 |
| Mph1103I | ATGCAT | 1 cut(s) | 586 |
| MscI | TGGCCA | 1 cut(s) | 25 |
| MslI | CAYNNNNRTG | 3 cut(s) | 410, 603, 642 |
| Msp20I | TGGCCA | 1 cut(s) | 25 |
| MspA1I | CMGCKG | 1 cut(s) | 283 |
| MspI | CCGG | 2 cut(s) | 129, 423 |
| MspR9I | CCNGG | 4 cut(s) | 27, 424, 491, 500 |
| MvaI | CCWGG | 3 cut(s) | 27, 491, 500 |
| MvnI | CGCG | 4 cut(s) | 168, 374, 389, 763 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 94, 248, 325, 371, 771, 1006 |
| NciI | CCSGG | 1 cut(s) | 424 |
| NcoI | CCATGG | 1 cut(s) | 405 |
| NdeII | GATC | 3 cut(s) | 32, 652, 805 |
| NlaIII | CATG | 7 cut(s) | 24, 358, 409, 584, 721, 839, 929 |
| NlaIV | GGNNCC | 3 cut(s) | 344, 400, 401 |
| NmeAIII | GCCGAG | 2 cut(s) | 155, 359 |
| NruI | TCGCGA | 1 cut(s) | 168 |
| NsiI | ATGCAT | 1 cut(s) | 586 |
| OliI | CACNNNNGTG | 1 cut(s) | 642 |
| PauI | GCGCGC | 1 cut(s) | 761 |
| PceI | AGGCCT | 1 cut(s) | 447 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 59, 182 |
| PfeI | GAWTC | 1 cut(s) | 940 |
| Pfl23II | CGTACG | 1 cut(s) | 186 |
| PkrI | GCNGC | 8 cut(s) | 241, 282, 391, 484, 673, 694, 767, 802 |
| Ple19I | CGATCG | 2 cut(s) | 35, 808 |
| PleI | GAGTC | 1 cut(s) | 834 |
| PmaCI | CACGTG | 1 cut(s) | 968 |
| PmlI | CACGTG | 1 cut(s) | 968 |
| PpsI | GAGTC | 1 cut(s) | 834 |
| Ppu21I | YACGTR | 1 cut(s) | 968 |
| PpuMI | RGGWCCY | 1 cut(s) | 399 |
| Psp124BI | GAGCTC | 1 cut(s) | 99 |
| Psp5II | RGGWCCY | 1 cut(s) | 399 |
| Psp6I | CCWGG | 3 cut(s) | 25, 489, 498 |
| PspCI | CACGTG | 1 cut(s) | 968 |
| PspFI | CCCAGC | 1 cut(s) | 503 |
| PspGI | CCWGG | 3 cut(s) | 25, 489, 498 |
| PspLI | CGTACG | 1 cut(s) | 186 |
| PspN4I | GGNNCC | 3 cut(s) | 344, 400, 401 |
| PspPI | GGNCC | 4 cut(s) | 178, 343, 399, 595 |
| PspPPI | RGGWCCY | 1 cut(s) | 399 |
| PstI | CTGCAG | 2 cut(s) | 487, 697 |
| PteI | GCGCGC | 1 cut(s) | 761 |
| PvuI | CGATCG | 2 cut(s) | 35, 808 |
| RruI | TCGCGA | 1 cut(s) | 168 |
| RsaI | GTAC | 4 cut(s) | 188, 266, 614, 722 |
| RsaNI | GTAC | 4 cut(s) | 187, 265, 613, 721 |
| RseI | CAYNNNNRTG | 3 cut(s) | 410, 603, 642 |
| SacI | GAGCTC | 1 cut(s) | 99 |
| SalI | GTCGAC | 1 cut(s) | 989 |
| SatI | GCNGC | 8 cut(s) | 240, 281, 390, 483, 672, 693, 766, 801 |
| Sau3AI | GATC | 3 cut(s) | 32, 652, 805 |
| Sau96I | GGNCC | 4 cut(s) | 178, 343, 399, 595 |
| SchI | GAGTC | 1 cut(s) | 834 |
| ScrFI | CCNGG | 4 cut(s) | 27, 424, 491, 500 |
| SduI | GDGCHC | 4 cut(s) | 74, 99, 610, 816 |
| SfaNI | GCATC | 6 cut(s) | 149, 285, 409, 593, 643, 926 |
| SfcI | CTRYAG | 3 cut(s) | 483, 693, 876 |
| SinI | GGWCC | 2 cut(s) | 343, 399 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 410, 603, 642 |
| SmlI | CTYRAG | 1 cut(s) | 449 |
| SmoI | CTYRAG | 1 cut(s) | 449 |
| Sse9I | AATT | 4 cut(s) | 191, 514, 522, 743 |
| SseBI | AGGCCT | 1 cut(s) | 447 |
| SsiI | CCGC | 5 cut(s) | 239, 281, 319, 389, 671 |
| SstI | GAGCTC | 1 cut(s) | 99 |
| StuI | AGGCCT | 1 cut(s) | 447 |
| StyD4I | CCNGG | 4 cut(s) | 25, 422, 489, 498 |
| StyI | CCWWGG | 1 cut(s) | 405 |
| TaaI | ACNGT | 3 cut(s) | 164, 735, 818 |
| TaiI | ACGT | 2 cut(s) | 56, 970 |
| TaqI | TCGA | 4 cut(s) | 35, 121, 369, 990 |
| TasI | AATT | 4 cut(s) | 191, 514, 522, 743 |
| TatI | WGTACW | 1 cut(s) | 720 |
| TauI | GCSGC | 4 cut(s) | 242, 283, 392, 674 |
| TfiI | GAWTC | 1 cut(s) | 940 |
| TscAI | CASTG | 1 cut(s) | 738 |
| TseI | GCWGC | 4 cut(s) | 482, 692, 765, 800 |
| TspDTI | ATGAA | 2 cut(s) | 23, 806 |
| TspGWI | ACGGA | 2 cut(s) | 51, 173 |
| TspRI | CASTG | 1 cut(s) | 738 |
| VpaK11BI | GGWCC | 2 cut(s) | 343, 399 |
| XapI | RAATTY | 2 cut(s) | 522, 743 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 412 |
| XmiI | GTMKAC | 2 cut(s) | 882, 990 |
| Zsp2I | ATGCAT | 1 cut(s) | 586 |