Rh4BG325300

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004033
Physical Location & Seq
Forward (+)
49079125 .. 49082118
2994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG325300.1

Sequence Viewer

Length: 723 bp
ATGAGCAAGCAGACGACATGGTCAGCTCGATCCGACGGCTCTCGTTTAACGGCCTTTCCCTTGCTCAAAACCAACGGCGGACGAAGCCGCCACCACCACCACAACCACAACCACAAGAGCAGCTTCTGGAAGCACAGCACCCGTACAGAGTCCACGTCATCCTCCTCGCGCTATGATTTCTCAGATCTGCCTCAGGAACTGGTAGCCAAAATCGGGGCCTCTCTCAGCTACCACAGCCTCAAAACGGCGTCGTTGGTCTGCAGGTCGTGGTGCGAGGCCCTCCGGCCGGCCAGGGAGGCCACGAAGTTCTTGACTTGGGGGAAGCAGTTCAAGCACGGCCGCGGCGATTTCAAACCTAACGTCAACAATGCTCTCAAGATGTTCTTGAAGGCTGCCGAGCTTGGGTCCACGAAGGCGATGGTCGATGCCGGACTCATATTCTGGGAGAGAGGCGACAAGGATAAGGCGTTTGGGTTGTACCGGGAAGCTGCCGAGGCCGGTGACCGGAATGCACAGGGCAATTTGGGGATGTGGTATTTGCAAGTTGAACCTCCAAATCCAAAGGAAGCTGTAAAGTGGTTATATCTTGCTTCTTTTCAGGGCCATGTCCGAGCTCAATACCAACTTGCAATTTGTCTGTATCAGGGACGTGGGGCAGATCGTAACATGAAAGAAGCGGTATGTTACTACATCATCCCAATTGTACTCTTGAGTTATCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

240

Amino Acids

27.19

Weight (kDa)

9.72

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 60 - 94 3.7e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 19
Acc36I ACCTGC 1 cut(s) 252
AccII CGCG 2 cut(s) 169, 342
AciI CCGC 5 cut(s) 78, 88, 340, 342, 677
AclWI GGATC 1 cut(s) 24
AcoI YGGCCR 3 cut(s) 284, 288, 337
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 3 cut(s) 145, 479, 705
AfiI CCNNNNNNNGG 5 cut(s) 213, 244, 286, 402, 504
AgsI TTSAA 4 cut(s) 331, 352, 388, 548
AjiI CACGTC 2 cut(s) 156, 650
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 7 cut(s) 26, 123, 228, 400, 488, 569, 614
AluI AGCT 7 cut(s) 26, 123, 228, 400, 488, 569, 614
Alw21I GWGCWC 1 cut(s) 616
AlwI GGATC 1 cut(s) 24
AlwNI CAGNNNCTG 2 cut(s) 126, 199
AoxI GGCC 9 cut(s) 51, 216, 276, 284, 288, 297, 337, 495, 601
ApeKI GCWGC 3 cut(s) 120, 392, 488
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 4 cut(s) 216, 277, 405, 601
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 512
AvaII GGWCC 1 cut(s) 405
AxyI CCTNAGG 1 cut(s) 192
BanII GRGCYC 1 cut(s) 616
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 3 cut(s) 132, 379, 475
BccI CCATC 1 cut(s) 412
BceAI ACGGC 5 cut(s) 52, 66, 91, 261, 352
BciT130I CCWGG 1 cut(s) 292
BcnI CCSGG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 259
BfuAI ACCTGC 1 cut(s) 252
BglI GCCNNNNNGGC 1 cut(s) 296
BglII AGATCT 1 cut(s) 184
BisI GCNGC 6 cut(s) 88, 121, 340, 343, 393, 489
BlsI GCNGC 6 cut(s) 89, 122, 341, 344, 394, 490
Bme1390I CCNGG 2 cut(s) 292, 482
Bme18I GGWCC 1 cut(s) 405
BmgBI CACGTC 2 cut(s) 156, 650
BmgT120I GGNCC 4 cut(s) 216, 277, 405, 601
BmiI GGNNCC 2 cut(s) 217, 406
BmrFI CCNGG 2 cut(s) 292, 482
BmsI GCATC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 482
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 291, 340, 492
BsaWI WCCGGW 1 cut(s) 504
Bsc4I CCNNNNNNNGG 5 cut(s) 213, 244, 286, 402, 504
Bse118I RCCGGY 2 cut(s) 286, 497
Bse1I ACTGG 1 cut(s) 204
Bse21I CCTNAGG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 3 cut(s) 291, 340, 492
BseGI GGATG 3 cut(s) 158, 534, 693
BseLI CCNNNNNNNGG 5 cut(s) 213, 244, 286, 402, 504
BseMII CTCAG 3 cut(s) 195, 206, 238
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 154
BseX3I CGGCCG 2 cut(s) 284, 337
BseXI GCAGC 3 cut(s) 132, 379, 475
Bsh1236I CGCG 2 cut(s) 169, 342
Bsh1285I CGRYCG 2 cut(s) 287, 340
BshFI GGCC 9 cut(s) 53, 218, 278, 286, 290, 299, 339, 497, 603
BsiEI CGRYCG 2 cut(s) 287, 340
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 6 cut(s) 283, 287, 429, 481, 498, 505
BslFI GGGAC 1 cut(s) 660
BslI CCNNNNNNNGG 5 cut(s) 213, 244, 286, 402, 504
BsmFI GGGAC 1 cut(s) 660
BsmI GAATGC 1 cut(s) 514
BsnI GGCC 9 cut(s) 53, 218, 278, 286, 290, 299, 339, 497, 603
Bsp1286I GDGCHC 1 cut(s) 616
Bsp143I GATC 3 cut(s) 29, 184, 658
BspACI CCGC 5 cut(s) 78, 88, 340, 342, 677
BspANI GGCC 9 cut(s) 53, 218, 278, 286, 290, 299, 339, 497, 603
BspCNI CTCAG 3 cut(s) 194, 205, 237
BspFNI CGCG 2 cut(s) 169, 342
BspLI GGNNCC 2 cut(s) 217, 406
BspMAI CTGCAG 1 cut(s) 263
BspMI ACCTGC 1 cut(s) 252
BspPI GGATC 1 cut(s) 24
BsrFI RCCGGY 2 cut(s) 286, 497
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 2 cut(s) 286, 497
BssECI CCNNGG 3 cut(s) 291, 340, 492
BssMI GATC 3 cut(s) 29, 184, 658
BssNI GRCGYC 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 292
BstACI GRCGYC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 8, 288
BstDEI CTNAG 3 cut(s) 181, 192, 224
BstDSI CCRYGG 1 cut(s) 340
BstEII GGTNACC 1 cut(s) 500
BstF5I GGATG 3 cut(s) 158, 534, 693
BstFNI CGCG 2 cut(s) 169, 342
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 3 cut(s) 32, 187, 661
BstMBI GATC 3 cut(s) 29, 184, 658
BstMCI CGRYCG 2 cut(s) 287, 340
BstMWI GCNNNNNNNGC 5 cut(s) 84, 234, 296, 331, 494
BstNI CCWGG 1 cut(s) 292
BstPI GGTNACC 1 cut(s) 500
BstSCI CCNGG 2 cut(s) 290, 480
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 2 cut(s) 169, 342
BstV1I GCAGC 3 cut(s) 132, 379, 475
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BstZI CGGCCG 2 cut(s) 284, 337
Bsu36I CCTNAGG 1 cut(s) 192
BsuRI GGCC 9 cut(s) 53, 218, 278, 286, 290, 299, 339, 497, 603
BtgI CCRYGG 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 431
BtrI CACGTC 2 cut(s) 156, 650
BtsCI GGATG 3 cut(s) 158, 534, 693
BveI ACCTGC 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 8, 288
CaiI CAGNNNCTG 2 cut(s) 126, 199
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 2 cut(s) 286, 497
Cfr13I GGNCC 4 cut(s) 216, 277, 405, 601
Cfr42I CCGCGG 1 cut(s) 343
CseI GACGC 1 cut(s) 237
Csp6I GTAC 3 cut(s) 144, 478, 704
CviAII CATG 3 cut(s) 18, 605, 667
CviQI GTAC 3 cut(s) 144, 478, 704
DdeI CTNAG 3 cut(s) 181, 192, 224
DpnI GATC 3 cut(s) 31, 186, 660
DpnII GATC 3 cut(s) 29, 184, 658
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
EaeI YGGCCR 3 cut(s) 284, 288, 337
EagI CGGCCG 2 cut(s) 284, 337
EciI GGCGGA 1 cut(s) 93
Ecl136II GAGCTC 1 cut(s) 614
EclXI CGGCCG 2 cut(s) 284, 337
Eco24I GRGCYC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 405
Eco52I CGGCCG 2 cut(s) 284, 337
Eco53kI GAGCTC 1 cut(s) 614
Eco81I CCTNAGG 1 cut(s) 192
Eco91I GGTNACC 1 cut(s) 500
EcoICRI GAGCTC 1 cut(s) 614
EcoO109I RGGNCCY 2 cut(s) 216, 277
EcoO65I GGTNACC 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 290
EcoT38I GRGCYC 1 cut(s) 616
FaeI CATG 3 cut(s) 21, 608, 670
FaiI YATR 8 cut(s) 19, 174, 437, 583, 606, 668, 682, 721
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 368, 400
FaqI GGGAC 1 cut(s) 660
FatI CATG 3 cut(s) 17, 604, 666
Fnu4HI GCNGC 6 cut(s) 88, 121, 340, 343, 393, 489
FokI GGATG 3 cut(s) 145, 541, 680
FriOI GRGCYC 1 cut(s) 616
FseI GGCCGGCC 1 cut(s) 290
Fsp4HI GCNGC 6 cut(s) 88, 121, 340, 343, 393, 489
GlaI GCGC 1 cut(s) 170
GluI GCNGC 6 cut(s) 88, 121, 340, 343, 393, 489
HaeIII GGCC 9 cut(s) 53, 218, 278, 286, 290, 299, 339, 497, 603
HapII CCGG 6 cut(s) 283, 287, 429, 481, 498, 505
HgaI GACGC 1 cut(s) 237
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 3 cut(s) 21, 608, 670
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 2 cut(s) 149, 432
HpaII CCGG 6 cut(s) 283, 287, 429, 481, 498, 505
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 3 cut(s) 153, 364, 408
Hpy188I TCNGA 3 cut(s) 34, 184, 611
Hpy188III TCNNGA 6 cut(s) 127, 194, 310, 376, 385, 709
Hpy8I GTNNAC 3 cut(s) 153, 364, 408
Hpy99I CGWCG 2 cut(s) 38, 253
HpyAV CCTTC 2 cut(s) 382, 406
HpyCH4IV ACGT 3 cut(s) 155, 360, 649
HpyCH4V TGCA 4 cut(s) 261, 512, 541, 629
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 234, 296, 331, 494
HpyF3I CTNAG 3 cut(s) 181, 192, 224
HpySE526I ACGT 3 cut(s) 155, 360, 649
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 3 cut(s) 21, 608, 670
HspAI GCGC 1 cut(s) 169
KroI GCCGGC 1 cut(s) 286
KroNI GCCGGC 1 cut(s) 288
KspI CCGCGG 1 cut(s) 343
Kzo9I GATC 3 cut(s) 29, 184, 658
Lsp1109I GCAGC 3 cut(s) 132, 379, 475
LweI GCATC 1 cut(s) 415
MaeII ACGT 3 cut(s) 155, 360, 649
MaeIII GTNAC 3 cut(s) 500, 662, 683
MalI GATC 3 cut(s) 31, 186, 660
MboI GATC 3 cut(s) 29, 184, 658
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 616
MluCI AATT 3 cut(s) 520, 630, 699
MlyI GAGTC 2 cut(s) 158, 426
MmeI TCCRAC 1 cut(s) 57
MroNI GCCGGC 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 6 cut(s) 283, 287, 429, 481, 498, 505
MspR9I CCNGG 2 cut(s) 292, 482
MunI CAATTG 1 cut(s) 699
Mva1269I GAATGC 1 cut(s) 514
MvaI CCWGG 1 cut(s) 292
MvnI CGCG 2 cut(s) 169, 342
MwoI GCNNNNNNNGC 5 cut(s) 84, 234, 296, 331, 494
NaeI GCCGGC 1 cut(s) 288
NciI CCSGG 1 cut(s) 482
NdeII GATC 3 cut(s) 29, 184, 658
NgoMIV GCCGGC 1 cut(s) 286
NlaIII CATG 3 cut(s) 21, 608, 670
NlaIV GGNNCC 2 cut(s) 217, 406
NmeAIII GCCGAG 2 cut(s) 421, 517
NmuCI GTSAC 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PctI GAATGC 1 cut(s) 514
PdiI GCCGGC 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 326
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 6 cut(s) 89, 122, 341, 344, 394, 490
PleI GAGTC 2 cut(s) 157, 426
PpsI GAGTC 2 cut(s) 157, 426
Psp124BI GAGCTC 1 cut(s) 616
Psp6I CCWGG 1 cut(s) 290
PspEI GGTNACC 1 cut(s) 500
PspGI CCWGG 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 217, 406
PspPI GGNCC 4 cut(s) 216, 277, 405, 601
PstI CTGCAG 1 cut(s) 263
PstNI CAGNNNCTG 2 cut(s) 126, 199
PsuI RGATCY 1 cut(s) 184
PsyI GACNNNGTC 1 cut(s) 19
RigI GGCCGGCC 1 cut(s) 290
RsaI GTAC 3 cut(s) 145, 479, 705
RsaNI GTAC 3 cut(s) 144, 478, 704
SacI GAGCTC 1 cut(s) 616
SacII CCGCGG 1 cut(s) 343
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 6 cut(s) 88, 121, 340, 343, 393, 489
Sau3AI GATC 3 cut(s) 29, 184, 658
Sau96I GGNCC 4 cut(s) 216, 277, 405, 601
SchI GAGTC 2 cut(s) 158, 426
ScrFI CCNGG 2 cut(s) 292, 482
SduI GDGCHC 1 cut(s) 616
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 259
SfiI GGCCNNNNNGGCC 1 cut(s) 296
Sfr303I CCGCGG 1 cut(s) 343
SgrBI CCGCGG 1 cut(s) 343
SinI GGWCC 1 cut(s) 405
SmlI CTYRAG 2 cut(s) 374, 709
SmoI CTYRAG 2 cut(s) 374, 709
Sse9I AATT 3 cut(s) 520, 630, 699
SsiI CCGC 5 cut(s) 78, 88, 340, 342, 677
SstI GAGCTC 1 cut(s) 616
StyD4I CCNGG 2 cut(s) 290, 480
TaiI ACGT 3 cut(s) 158, 363, 652
TaqI TCGA 2 cut(s) 28, 423
TasI AATT 3 cut(s) 520, 630, 699
TatI WGTACW 1 cut(s) 703
TauI GCSGC 3 cut(s) 90, 342, 345
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 3 cut(s) 120, 392, 488
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 1 cut(s) 683
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.