Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Forward (+)

27335531 .. 27337123

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGGTAGAGATTGTGTGGTTGGTTAAAGCCGCTTGGATCACCGTTTGGATCGTCTCTATACTTCCTTTGGTGATTGCTTCAATACCTAGTTCAAAGCTTAACTCTTTTCGTGAACTCGTTTTGAGTTTCGCTGGTAGAGGCAAGATTCTTCACCCATCCTCTCAGAAGTTTACAGTTCCTCAGAAGTTCTTTGGTCACTTCTATGTTGTCGGAGTGGTGTGGACAACTCTCCTGCTTGCTGCAACTTGGATGTATGCTTGCAAAATGGCCGGAGGTTCCCACGTTTTCTCTTTCCATATGACTCATGTTGAGCATCGGTTTAAAGTGGGGCGAGCGGTGTTTCTACTTCTTCTGATGGAGATCCATGTCTTGAGACGTGTTATAGAGTCATTCTATGTATTCAAATATAGCACTTCCGCTCGGATGCACATTCTCGCTTATGTTGGCGCATTGTTTTACTATGTAGCAGCGCCTTTGTCACTCTGCTCCAATATTGCTCCAGAGGTAGCAAGATTCGTAGGAAGTCAAGTGGCTGAGTTCATTGCTAGTGGGAAAAGCCATAGTCATGATTTTAATTTGTTATTATCTATAAGTCCTTTGATGAAGCTTGGATCACTCCAGTGGATTGGTGGAGCCATTTTTCTTTGGGGATGGATACATCAACGTCGCTGTCACGCCATTCTTGGATCACTCCGGGAATATCCTAGTCAAGCAAAAGAGTACATAATTCCATATGGAGATTGGTTTGAGATGGTCTCATGTCCGCATTTCCTAGCAGAAATCGTTTTATATCTAGGTTTACTTATATCGAGTGGAGGAACAGATATAAGCATCTGGTTACTCTTTGGTTTCGTGGCTGCTAATCTGACATACGCAGCTGGAGAAACGCACCGTTGGTATCTCCAAAAGTTTGAGAATTATCCGGCTAGTCGGCATGCTATTTTCCCTCATGTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

320

Amino Acids

36.31

Weight (kDa)

9.28

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	209 - 320	9e-24	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	338, 422
AccI	GTMKAC	1 cut(s)	957
AciI	CCGC	4 cut(s)	33, 338, 420, 767
AclWI	GGATC	5 cut(s)	47, 59, 358, 622, 697
AcoI	YGGCCR	1 cut(s)	270
AfaI	GTAC	1 cut(s)	725
AflIII	ACRYGT	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	84, 96, 406
AjiI	CACGTC	1 cut(s)	380
AleI	CACNNNNGTG	1 cut(s)	622
AluBI	AGCT	3 cut(s)	100, 610, 881
AluI	AGCT	3 cut(s)	100, 610, 881
Alw26I	GTCTC	3 cut(s)	61, 370, 763
AlwI	GGATC	5 cut(s)	47, 59, 358, 622, 697
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	4 cut(s)	242, 470, 860, 878
AspLEI	GCGC	2 cut(s)	452, 475
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	3 cut(s)	34, 85, 146
BbvI	GCAGC	4 cut(s)	229, 482, 847, 890
BccI	CCATC	4 cut(s)	166, 352, 648, 748
BciVI	GTATCC	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	3 cut(s)	61, 370, 763
BfaI	CTAG	6 cut(s)	90, 549, 708, 776, 797, 930
BfoI	RGCGCY	1 cut(s)	476
BfuI	GTATCC	1 cut(s)	651
BisI	GCNGC	5 cut(s)	33, 243, 471, 861, 879
BlsI	GCNGC	5 cut(s)	34, 244, 472, 862, 880
Bme1390I	CCNGG	1 cut(s)	698
BmgBI	CACGTC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	280, 637
BmrFI	CCNGG	1 cut(s)	698
BmsI	GCATC	3 cut(s)	325, 417, 843
BplI	GAGNNNNNCTC	2 cut(s)	743, 775
BpmI	CTGGAG	3 cut(s)	486, 605, 903
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	763
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	543
Bse8I	GATNNNNATC	1 cut(s)	362
BseGI	GGATG	4 cut(s)	158, 258, 432, 659
BseJI	GATNNNNATC	1 cut(s)	362
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	3 cut(s)	179, 197, 528
BseNI	ACTGG	1 cut(s)	622
BseXI	GCAGC	4 cut(s)	229, 482, 847, 890
BshFI	GGCC	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	273, 697, 926
BsmAI	GTCTC	3 cut(s)	61, 370, 763
BsmBI	CGTCTC	2 cut(s)	61, 370
BsnI	GGCC	1 cut(s)	272
Bso31I	GGTCTC	1 cut(s)	763
Bsp143I	GATC	5 cut(s)	39, 51, 363, 614, 689
BspACI	CCGC	4 cut(s)	33, 338, 420, 767
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	3 cut(s)	178, 196, 529
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	2 cut(s)	280, 637
BspPI	GGATC	5 cut(s)	47, 59, 358, 622, 697
BspTNI	GGTCTC	1 cut(s)	763
BsrBI	CCGCTC	2 cut(s)	338, 422
BsrDI	GCAATG	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	622
BssMI	GATC	5 cut(s)	39, 51, 363, 614, 689
Bst4CI	ACNGT	3 cut(s)	46, 178, 896
BstC8I	GCNNGC	4 cut(s)	240, 262, 336, 939
BstDEI	CTNAG	3 cut(s)	165, 183, 537
BstF5I	GGATG	4 cut(s)	158, 258, 432, 659
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	2 cut(s)	452, 475
BstKTI	GATC	5 cut(s)	42, 54, 366, 617, 692
BstMAI	GTCTC	3 cut(s)	61, 370, 763
BstMBI	GATC	5 cut(s)	39, 51, 363, 614, 689
BstNSI	RCATGY	1 cut(s)	941
BstSCI	CCNGG	1 cut(s)	696
BstV1I	GCAGC	4 cut(s)	229, 482, 847, 890
BstX2I	RGATCY	1 cut(s)	363
BstXI	CCANNNNNNTGG	1 cut(s)	629
BstYI	RGATCY	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	380
BtsCI	GGATG	4 cut(s)	158, 258, 432, 659
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	4 cut(s)	240, 262, 336, 939
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	2 cut(s)	452, 475
Csp6I	GTAC	1 cut(s)	724
CviAII	CATG	6 cut(s)	308, 368, 569, 762, 938, 953
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	3 cut(s)	165, 183, 537
DpnI	GATC	5 cut(s)	41, 53, 365, 616, 691
DpnII	GATC	5 cut(s)	39, 51, 363, 614, 689
DraI	TTTAAA	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	763
Esp3I	CGTCTC	2 cut(s)	61, 370
FaeI	CATG	6 cut(s)	311, 371, 572, 765, 941, 956
FatI	CATG	6 cut(s)	307, 367, 568, 761, 937, 952
FauNDI	CATATG	2 cut(s)	300, 736
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	5 cut(s)	33, 243, 471, 861, 879
FokI	GGATG	4 cut(s)	145, 265, 439, 666
Fsp4HI	GCNGC	5 cut(s)	33, 243, 471, 861, 879
FspBI	CTAG	6 cut(s)	90, 549, 708, 776, 797, 930
GlaI	GCGC	2 cut(s)	451, 474
GluI	GCNGC	5 cut(s)	33, 243, 471, 861, 879
GsuI	CTGGAG	3 cut(s)	486, 605, 903
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	3 cut(s)	273, 697, 926
HhaI	GCGC	2 cut(s)	452, 475
Hin1II	CATG	6 cut(s)	311, 371, 572, 765, 941, 956
Hin6I	GCGC	2 cut(s)	450, 473
HinP1I	GCGC	2 cut(s)	450, 473
HindIII	AAGCTT	2 cut(s)	98, 608
HinfI	GANTC	4 cut(s)	148, 304, 389, 516
HpaII	CCGG	3 cut(s)	273, 697, 926
HphI	GGTGA	3 cut(s)	34, 85, 146
Hpy166II	GTNNAC	5 cut(s)	116, 174, 225, 803, 958
Hpy188I	TCNGA	6 cut(s)	168, 186, 215, 357, 426, 870
Hpy188III	TCNNGA	4 cut(s)	113, 373, 503, 569
Hpy8I	GTNNAC	5 cut(s)	116, 174, 225, 803, 958
Hpy99I	CGWCG	1 cut(s)	672
HpyCH4III	ACNGT	3 cut(s)	46, 178, 896
HpyCH4IV	ACGT	3 cut(s)	285, 379, 667
HpyCH4V	TGCA	3 cut(s)	245, 264, 430
HpyF3I	CTNAG	3 cut(s)	165, 183, 537
HpySE526I	ACGT	3 cut(s)	285, 379, 667
Hsp92II	CATG	6 cut(s)	311, 371, 572, 765, 941, 956
HspAI	GCGC	2 cut(s)	450, 473
Kzo9I	GATC	5 cut(s)	39, 51, 363, 614, 689
LmnI	GCTCC	3 cut(s)	494, 505, 635
LpnPI	CCDG	9 cut(s)	120, 248, 286, 516, 635, 710, 823, 867, 939
Lsp1109I	GCAGC	4 cut(s)	229, 482, 847, 890
LweI	GCATC	3 cut(s)	325, 417, 843
MaeI	CTAG	6 cut(s)	90, 549, 708, 776, 797, 930
MaeII	ACGT	3 cut(s)	285, 379, 667
MaeIII	GTNAC	4 cut(s)	197, 480, 674, 840
MalI	GATC	5 cut(s)	41, 53, 365, 616, 691
MbiI	CCGCTC	2 cut(s)	338, 422
MboI	GATC	5 cut(s)	39, 51, 363, 614, 689
MboII	GAAGA	2 cut(s)	143, 344
MflI	RGATCY	1 cut(s)	363
MluCI	AATT	3 cut(s)	577, 729, 919
MlyI	GAGTC	2 cut(s)	298, 398
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	7 cut(s)	134, 172, 192, 269, 499, 812, 960
MseI	TTAA	4 cut(s)	27, 102, 324, 576
MslI	CAYNNNNRTG	3 cut(s)	204, 567, 622
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	3 cut(s)	273, 697, 926
MspR9I	CCNGG	1 cut(s)	698
NciI	CCSGG	1 cut(s)	698
NdeI	CATATG	2 cut(s)	300, 736
NdeII	GATC	5 cut(s)	39, 51, 363, 614, 689
NlaIII	CATG	6 cut(s)	311, 371, 572, 765, 941, 956
NlaIV	GGNNCC	2 cut(s)	280, 637
NmuCI	GTSAC	3 cut(s)	197, 480, 674
NspI	RCATGY	1 cut(s)	941
OliI	CACNNNNGTG	1 cut(s)	622
PaeI	GCATGC	1 cut(s)	941
PagI	TCATGA	1 cut(s)	568
PfeI	GAWTC	2 cut(s)	148, 516
PfoI	TCCNGGA	1 cut(s)	696
PkrI	GCNGC	5 cut(s)	34, 244, 472, 862, 880
PleI	GAGTC	2 cut(s)	298, 397
PpsI	GAGTC	2 cut(s)	298, 397
PspN4I	GGNNCC	2 cut(s)	280, 637
PsuI	RGATCY	1 cut(s)	363
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	3 cut(s)	204, 567, 622
SaqAI	TTAA	4 cut(s)	27, 102, 324, 576
SatI	GCNGC	5 cut(s)	33, 243, 471, 861, 879
Sau3AI	GATC	5 cut(s)	39, 51, 363, 614, 689
SchI	GAGTC	2 cut(s)	298, 398
ScrFI	CCNGG	1 cut(s)	698
SfaNI	GCATC	3 cut(s)	325, 417, 843
SmiMI	CAYNNNNRTG	3 cut(s)	204, 567, 622
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
SphI	GCATGC	1 cut(s)	941
Sse9I	AATT	3 cut(s)	577, 729, 919
SsiI	CCGC	4 cut(s)	33, 338, 420, 767
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	6 cut(s)	90, 549, 708, 776, 797, 930
StyD4I	CCNGG	1 cut(s)	696
TaaI	ACNGT	3 cut(s)	46, 178, 896
TaiI	ACGT	3 cut(s)	288, 382, 670
TaqI	TCGA	1 cut(s)	812
TasI	AATT	3 cut(s)	577, 729, 919
TatI	WGTACW	1 cut(s)	723
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	148, 516
Tru1I	TTAA	4 cut(s)	27, 102, 324, 576
Tru9I	TTAA	4 cut(s)	27, 102, 324, 576
TscAI	CASTG	1 cut(s)	629
TseFI	GTSAC	3 cut(s)	197, 480, 674
TseI	GCWGC	4 cut(s)	242, 470, 860, 878
Tsp45I	GTSAC	3 cut(s)	197, 480, 674
TspDTI	ATGAA	2 cut(s)	532, 620
TspRI	CASTG	1 cut(s)	629
XceI	RCATGY	1 cut(s)	941
XcmI	CCANNNNNNNNNTGG	2 cut(s)	629, 741
XmiI	GTMKAC	1 cut(s)	957
XspI	CTAG	6 cut(s)	90, 549, 708, 776, 797, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.