Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Reverse (-)

25054727 .. 25060343

Gene Structure 5617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG160500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGGTGGGGCTTGTTGCGCTGCTCAGAACAGCGTGGATTGCAGCGACATTGCCTTTACTCATAGCTTCGTTGCCCTTTTCTTGGCTCAACCCTGTTCATAAAACCGTTTTGGCGTTTGCCAAGAGAGGGAAGACCATGTCTTCTTCAAGGAGATTCACAGTTCCTCAAAAGTTCTTCTGCCATTTCTATGTGCTGGCTGTTGTGTGGACAACCCTACTTCTTGTTACAACTTGGATGTATGCATATAAAATCGTGCCAATGTATGTGGACCCATTTCTTTATCCTACATTCGCCAGCCGCTTTACTGGAGGTTCACATATCATTTCCTGGCGCAAGTCTCCATCAGTTCCTATGGGTTATAGATATAGCGTCTGGCGTTCTGTCTTTTTGCTTTTGTTGATGGAAGTTCAAGTTGTGAAGCGGCTTATTGAGACAATATATGTATTCAAGTATAGCTCCACTGCTAGGATGCACATCTTTGGGTATCTGACTGGCCTCTTTTTCTACACAGCTGCACCCTTGTCACTTTGCTGCAATAATTTTCTGGAGGTCTATAACTTTTCCGTTAATGGAGTGGCTGAATTTATTGTGAAAGGCAAGAAGAATGCTATGCAAGATCTGGATTTTGATTCTTTGGAATTTATTAGTTCTTTTCTGAAGCTTGGTTGGCTCCAGTGGATTGGTGCTGCTTTATTCTTTTGGGGTTGGATCCATCAGCGCCGCTGTCATGAAATTCTTGGCTCATTACGAGAACACGGTGAACAAAATGTATATGTGATTCCTCATGGGGATTGGTTTAAAATTGTATCATCTCCACATTATCTTGCTGAGATAGGCTCATTACGGAAAAATAGAGAACAAAATGATGCGTATATGATCCCTTATGGTGATTGGTTTGAAATTGTTTCATCTCCACACTATCTTGCTGAGATAGTTATATATGTTGGTTTTGTGGTCGCTAGTGGAGGAGTAGACCTCACAATCTGGTTACTACTGGGATTCGTGGTGGTTAACTTAACGTTTACAGCAGCGATTACACATAGGTGGTACCATCGGAAATTCGAAAATTACCCCAGCAATCGGTATGCCATTATTCCACTTGTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

370

Amino Acids

42.86

Weight (kDa)

9.38

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	226 - 279	4.9e-09	3-oxo-5-alpha-steroid 4-dehydrogenase
Steroid_dh	PF02544	283 - 370	1.8e-23	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1050
AccB1I	GGYRCC	1 cut(s)	1050
AccI	GTMKAC	2 cut(s)	975, 1107
AciI	CCGC	3 cut(s)	301, 424, 724
AclI	AACGTT	1 cut(s)	1022
AclWI	GGATC	3 cut(s)	706, 719, 874
AcsI	RAATTY	4 cut(s)	584, 641, 735, 1061
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	1 cut(s)	1052
AfiI	CCNNNNNNNGG	4 cut(s)	84, 129, 468, 1083
AgsI	TTSAA	4 cut(s)	150, 413, 451, 902
AjnI	CCWGG	1 cut(s)	329
AleI	CACNNNNGTG	1 cut(s)	1045
AluBI	AGCT	4 cut(s)	68, 459, 515, 664
AluI	AGCT	4 cut(s)	68, 459, 515, 664
Alw26I	GTCTC	2 cut(s)	345, 428
AlwI	GGATC	3 cut(s)	706, 719, 874
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	6 cut(s)	22, 44, 515, 534, 689, 1031
ApoI	RAATTY	4 cut(s)	584, 641, 735, 1061
Asp718I	GGTACC	1 cut(s)	1050
AspLEI	GCGC	3 cut(s)	22, 336, 723
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	773, 902
AsuII	TTCGAA	1 cut(s)	1065
AvaII	GGWCC	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	711
BanI	GGYRCC	1 cut(s)	1050
BbsI	GAAGAC	2 cut(s)	135, 140
BbvI	GCAGC	6 cut(s)	9, 56, 502, 521, 676, 1043
BccI	CCATC	4 cut(s)	352, 397, 723, 1062
BciT130I	CCWGG	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	345, 428
BfaI	CTAG	2 cut(s)	468, 963
BfoI	RGCGCY	1 cut(s)	724
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	9 cut(s)	23, 45, 301, 425, 516, 535, 690, 724, 1032
BlsI	GCNGC	9 cut(s)	24, 46, 302, 426, 517, 536, 691, 725, 1033
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	4 cut(s)	273, 674, 713, 1052
BmrFI	CCNGG	1 cut(s)	331
BmrI	ACTGGG	1 cut(s)	1007
BmsI	GCATC	2 cut(s)	462, 859
BmuI	ACTGGG	1 cut(s)	1007
BpiI	GAAGAC	2 cut(s)	135, 140
BplI	GAGNNNNNCTC	4 cut(s)	824, 856, 963, 995
BpmI	CTGGAG	3 cut(s)	330, 569, 659
Bpu14I	TTCGAA	1 cut(s)	1065
BsaBI	GATNNNNATC	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 129, 468, 1083
Bse1I	ACTGG	4 cut(s)	313, 499, 676, 1002
Bse3DI	GCAATG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	243, 477
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	4 cut(s)	84, 129, 468, 1083
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	40, 822, 921
BseNI	ACTGG	4 cut(s)	313, 499, 676, 1002
BseRI	GAGGAG	1 cut(s)	984
BseXI	GCAGC	6 cut(s)	9, 56, 502, 521, 676, 1043
BseYI	CCCAGC	1 cut(s)	1076
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	1 cut(s)	1050
BslI	CCNNNNNNNGG	4 cut(s)	84, 129, 468, 1083
BsmAI	GTCTC	2 cut(s)	345, 428
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	1065
Bsp143I	GATC	3 cut(s)	619, 711, 879
BspACI	CCGC	3 cut(s)	301, 424, 724
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	3 cut(s)	39, 823, 922
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	4 cut(s)	273, 674, 713, 1052
BspPI	GGATC	3 cut(s)	706, 719, 874
BspT104I	TTCGAA	1 cut(s)	1065
BspT107I	GGYRCC	1 cut(s)	1050
BsrDI	GCAATG	1 cut(s)	50
BsrI	ACTGG	4 cut(s)	313, 499, 676, 1002
BssMI	GATC	3 cut(s)	619, 711, 879
BssNAI	GTATAC	1 cut(s)	1108
Bst1107I	GTATAC	1 cut(s)	1108
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	109, 163, 761
BstBI	TTCGAA	1 cut(s)	1065
BstC8I	GCNNGC	2 cut(s)	198, 298
BstDEI	CTNAG	3 cut(s)	26, 831, 930
BstF5I	GGATG	2 cut(s)	243, 477
BstH2I	RGCGCY	1 cut(s)	724
BstHHI	GCGC	3 cut(s)	22, 336, 723
BstKTI	GATC	3 cut(s)	622, 714, 882
BstMAI	GTCTC	2 cut(s)	345, 428
BstMBI	GATC	3 cut(s)	619, 711, 879
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 41, 670
BstNI	CCWGG	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	6 cut(s)	9, 56, 502, 521, 676, 1043
BstV2I	GAAGAC	2 cut(s)	135, 140
BstX2I	RGATCY	2 cut(s)	619, 711
BstXI	CCANNNNNNTGG	1 cut(s)	683
BstYI	RGATCY	2 cut(s)	619, 711
BstZ17I	GTATAC	1 cut(s)	1108
BsuRI	GGCC	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	243, 477
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	462, 683
Cac8I	GCNNGC	2 cut(s)	198, 298
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	3 cut(s)	22, 336, 723
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	1051
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviAII	CATG	3 cut(s)	139, 731, 788
CviQI	GTAC	1 cut(s)	1051
DdeI	CTNAG	3 cut(s)	26, 831, 930
DpnI	GATC	3 cut(s)	621, 713, 881
DpnII	GATC	3 cut(s)	619, 711, 879
DraI	TTTAAA	1 cut(s)	802
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	329
EcoT22I	ATGCAT	1 cut(s)	247
FaeI	CATG	3 cut(s)	142, 734, 791
FatI	CATG	3 cut(s)	138, 730, 787
FblI	GTMKAC	2 cut(s)	975, 1107
Fnu4HI	GCNGC	9 cut(s)	23, 45, 301, 425, 516, 535, 690, 724, 1032
FokI	GGATG	2 cut(s)	250, 484
Fsp4HI	GCNGC	9 cut(s)	23, 45, 301, 425, 516, 535, 690, 724, 1032
FspBI	CTAG	2 cut(s)	468, 963
GlaI	GCGC	3 cut(s)	21, 335, 722
GluI	GCNGC	9 cut(s)	23, 45, 301, 425, 516, 535, 690, 724, 1032
GsaI	CCCAGC	1 cut(s)	1080
GsuI	CTGGAG	3 cut(s)	330, 569, 659
HaeII	RGCGCY	1 cut(s)	724
HaeIII	GGCC	1 cut(s)	498
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	3 cut(s)	22, 336, 723
Hin1II	CATG	3 cut(s)	142, 734, 791
Hin6I	GCGC	3 cut(s)	20, 334, 721
HinP1I	GCGC	3 cut(s)	20, 334, 721
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	4 cut(s)	156, 632, 781, 1002
HpaI	GTTAAC	1 cut(s)	1015
HphI	GGTGA	2 cut(s)	773, 902
Hpy166II	GTNNAC	8 cut(s)	210, 271, 317, 764, 976, 1015, 1026, 1108
Hpy188I	TCNGA	4 cut(s)	29, 492, 660, 1059
Hpy188III	TCNNGA	3 cut(s)	548, 623, 731
Hpy8I	GTNNAC	8 cut(s)	210, 271, 317, 764, 976, 1015, 1026, 1108
HpyCH4III	ACNGT	3 cut(s)	109, 163, 761
HpyCH4IV	ACGT	1 cut(s)	1022
HpyCH4V	TGCA	6 cut(s)	44, 245, 475, 518, 537, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 41, 670
HpyF3I	CTNAG	3 cut(s)	26, 831, 930
HpySE526I	ACGT	1 cut(s)	1022
Hsp92II	CATG	3 cut(s)	142, 734, 791
HspAI	GCGC	3 cut(s)	20, 334, 721
KpnI	GGTACC	1 cut(s)	1054
KspAI	GTTAAC	1 cut(s)	1015
Kzo9I	GATC	3 cut(s)	619, 711, 879
LmnI	GCTCC	2 cut(s)	464, 678
Lsp1109I	GCAGC	6 cut(s)	9, 56, 502, 521, 676, 1043
LweI	GCATC	2 cut(s)	462, 859
MaeI	CTAG	2 cut(s)	468, 963
MaeII	ACGT	1 cut(s)	1022
MaeIII	GTNAC	3 cut(s)	226, 525, 990
MalI	GATC	3 cut(s)	621, 713, 881
MboI	GATC	3 cut(s)	619, 711, 879
MboII	GAAGA	5 cut(s)	135, 138, 145, 169, 616
MflI	RGATCY	2 cut(s)	619, 711
MluCI	AATT	8 cut(s)	541, 584, 641, 735, 804, 903, 1061, 1069
MmeI	TCCRAC	1 cut(s)	689
MnlI	CCTC	8 cut(s)	122, 177, 305, 509, 544, 795, 962, 989
Mph1103I	ATGCAT	1 cut(s)	247
MseI	TTAA	4 cut(s)	570, 801, 1014, 1019
MslI	CAYNNNNRTG	2 cut(s)	189, 1045
MspA1I	CMGCKG	2 cut(s)	515, 726
MspR9I	CCNGG	1 cut(s)	331
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	19, 41, 670
NdeII	GATC	3 cut(s)	619, 711, 879
NlaIII	CATG	3 cut(s)	142, 734, 791
NlaIV	GGNNCC	4 cut(s)	273, 674, 713, 1052
NmuCI	GTSAC	1 cut(s)	525
NsiI	ATGCAT	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	1065
OliI	CACNNNNGTG	1 cut(s)	1045
PagI	TCATGA	1 cut(s)	730
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	4 cut(s)	156, 632, 781, 1002
PflFI	GACNNNGTC	1 cut(s)	139
PkrI	GCNGC	9 cut(s)	24, 46, 302, 426, 517, 536, 691, 725, 1033
Psp1406I	AACGTT	1 cut(s)	1022
Psp6I	CCWGG	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	1076
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	4 cut(s)	273, 674, 713, 1052
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	619, 711
PsyI	GACNNNGTC	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	1052
RsaNI	GTAC	1 cut(s)	1051
RseI	CAYNNNNRTG	2 cut(s)	189, 1045
SaqAI	TTAA	4 cut(s)	570, 801, 1014, 1019
SatI	GCNGC	9 cut(s)	23, 45, 301, 425, 516, 535, 690, 724, 1032
Sau3AI	GATC	3 cut(s)	619, 711, 879
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	462, 859
SfuI	TTCGAA	1 cut(s)	1065
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	189, 1045
Sse9I	AATT	8 cut(s)	541, 584, 641, 735, 804, 903, 1061, 1069
SsiI	CCGC	3 cut(s)	301, 424, 724
SspMI	CTAG	2 cut(s)	468, 963
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	3 cut(s)	109, 163, 761
TaiI	ACGT	1 cut(s)	1025
TaqI	TCGA	1 cut(s)	1065
TasI	AATT	8 cut(s)	541, 584, 641, 735, 804, 903, 1061, 1069
TauI	GCSGC	3 cut(s)	303, 427, 726
TfiI	GAWTC	4 cut(s)	156, 632, 781, 1002
Tru1I	TTAA	4 cut(s)	570, 801, 1014, 1019
Tru9I	TTAA	4 cut(s)	570, 801, 1014, 1019
TscAI	CASTG	2 cut(s)	469, 683
TseFI	GTSAC	1 cut(s)	525
TseI	GCWGC	6 cut(s)	22, 44, 515, 534, 689, 1031
Tsp45I	GTSAC	1 cut(s)	525
TspDTI	ATGAA	3 cut(s)	89, 747, 900
TspGWI	ACGGA	2 cut(s)	556, 862
TspRI	CASTG	2 cut(s)	469, 683
Tth111I	GACNNNGTC	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	4 cut(s)	584, 641, 735, 1061
XmiI	GTMKAC	2 cut(s)	975, 1107
XspI	CTAG	2 cut(s)	468, 963
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.