Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Reverse (-)

25163009 .. 25165724

Gene Structure 2716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24068

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGGTGGGGCTTGTTGGGTTGCTGAGAACAGCTTGGATTGCATCCATACTGCCTACACTCTTAGCTTCTGTACCCTGTTCAGGGCTGAACTCTTTTTATGAACGTCTTATGGTATTTGCCAAGCGAGGGAAAATCATGCAATCTTCCTCGCAGAAATTCTCAGTTCCTCAGAAGTTCTTCAGTTATTTCTACATAGCGGCTATTGTGTGGACAACTTTACTTCTTGTTACGACTTGGATGTATGCATGTAATGTGGTGCCATTCGAGAATCACTCTACTGGAGGTTCACATATCATTAGTGTTTGGCGTTCAGTGTTTCTGCTTTTATTGATGGAAGTTCAGGTCCTGAGGCGCCTCTTTGAGACACTATACGTATTCAACTATAGCTCCTCAGCTAGGATGCACATTTTAGGATATCTGACTAGCTACATTTTCTACACAGTTGCACCCTTATCACTTTGCTGCAACCACGCTCTTGAGGTCTATAAATTTTCTCTAAATGGAGTGGCTGACTTCCTTTTCAAAGGCAATACTAGTATGCTAGAATATGATCGATTGGAATTCATGAGTCCTCTTTTGAAACTTGGCTGGCTCCAATGGACTGGTGCAGCTATATTCTTTTGGGGTTGGATCTACCAGCGCAATTGTCATAAAATTCTTGGCTCATTACGGAAAAACAGAGAACAAAATGATGCATATATGATCCCTTATGGTGATTGGTTTGAAATTGTTTCATCTCCACACTATCTTGCTGAGATAGTAAGTCTATTCCTTCCACTGCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

263

Amino Acids

30.35

Weight (kDa)

8.9

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	200 - 256	9.6e-10	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	259, 354
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	2 cut(s)	641, 700
AcsI	RAATTY	4 cut(s)	158, 491, 563, 657
AcuI	CTGAAG	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	355
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	4 cut(s)	83, 84, 129, 399
AgsI	TTSAA	4 cut(s)	382, 526, 583, 728
AhlI	ACTAGT	1 cut(s)	536
AluBI	AGCT	6 cut(s)	35, 68, 390, 398, 429, 614
AluI	AGCT	6 cut(s)	35, 68, 390, 398, 429, 614
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	641, 700
AlwNI	CAGNNNCTG	1 cut(s)	349
ApeKI	GCWGC	2 cut(s)	465, 611
ApoI	RAATTY	4 cut(s)	158, 491, 563, 657
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	357, 645
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	728
AvaII	GGWCC	1 cut(s)	346
AxyI	CCTNAGG	1 cut(s)	350
BanI	GGYRCC	2 cut(s)	259, 354
BbvCI	CCTCAGC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	452, 623
BccI	CCATC	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	359
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	4 cut(s)	399, 426, 537, 545
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	3 cut(s)	201, 466, 612
BlsI	GCNGC	3 cut(s)	202, 467, 613
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	3 cut(s)	261, 356, 596
BmsI	GCATC	3 cut(s)	53, 393, 685
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	394
BpuEI	CTTGAG	1 cut(s)	500
Bsa29I	ATCGAT	1 cut(s)	556
BsaAI	YACGTR	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 84, 129, 399
Bse1I	ACTGG	2 cut(s)	286, 610
Bse21I	CCTNAGG	1 cut(s)	350
BseCI	ATCGAT	1 cut(s)	556
BseGI	GGATG	3 cut(s)	44, 246, 408
BseLI	CCNNNNNNNGG	4 cut(s)	83, 84, 129, 399
BseMII	CTCAG	6 cut(s)	17, 177, 185, 341, 408, 747
BseNI	ACTGG	2 cut(s)	286, 610
BseRI	GAGGAG	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	452, 623
BsgI	GTGCAG	1 cut(s)	630
BshNI	GGYRCC	2 cut(s)	259, 354
BshVI	ATCGAT	1 cut(s)	556
BslI	CCNNNNNNNGG	4 cut(s)	83, 84, 129, 399
BsmAI	GTCTC	1 cut(s)	359
Bsp143I	GATC	3 cut(s)	553, 633, 705
BspACI	CCGC	1 cut(s)	200
BspCNI	CTCAG	6 cut(s)	18, 176, 184, 342, 407, 748
BspDI	ATCGAT	1 cut(s)	556
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	3 cut(s)	261, 356, 596
BspPI	GGATC	2 cut(s)	641, 700
BspT107I	GGYRCC	2 cut(s)	259, 354
BsrI	ACTGG	2 cut(s)	286, 610
BssMI	GATC	3 cut(s)	553, 633, 705
BssNI	GRCGYC	1 cut(s)	355
Bst4CI	ACNGT	1 cut(s)	445
BstACI	GRCGYC	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	593, 786
BstDEI	CTNAG	7 cut(s)	26, 64, 163, 171, 350, 394, 756
BstENI	CCTNNNNNAGG	1 cut(s)	397
BstF5I	GGATG	3 cut(s)	44, 246, 408
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	2 cut(s)	357, 645
BstKTI	GATC	3 cut(s)	556, 636, 708
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	3 cut(s)	553, 633, 705
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNSI	RCATGY	2 cut(s)	252, 788
BstSFI	CTRYAG	1 cut(s)	385
BstSNI	TACGTA	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	452, 623
BstX2I	RGATCY	1 cut(s)	633
BstXI	CCANNNNNNTGG	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	633
Bsu15I	ATCGAT	1 cut(s)	556
Bsu36I	CCTNAGG	1 cut(s)	350
BsuTUI	ATCGAT	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	44, 246, 408
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	2 cut(s)	321, 779
Cac8I	GCNNGC	2 cut(s)	593, 786
CaiI	CAGNNNCTG	1 cut(s)	349
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	2 cut(s)	357, 645
Cfr13I	GGNCC	1 cut(s)	346
ClaI	ATCGAT	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	4 cut(s)	139, 249, 568, 785
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	7 cut(s)	26, 64, 163, 171, 350, 394, 756
DinI	GGCGCC	1 cut(s)	356
DpnI	GATC	3 cut(s)	555, 635, 707
DpnII	GATC	3 cut(s)	553, 633, 705
Eco105I	TACGTA	1 cut(s)	376
Eco32I	GATATC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	166
Eco81I	CCTNAGG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	563
EcoRV	GATATC	1 cut(s)	419
EcoT22I	ATGCAT	2 cut(s)	250, 700
EgeI	GGCGCC	1 cut(s)	356
EheI	GGCGCC	1 cut(s)	356
FaeI	CATG	4 cut(s)	142, 252, 571, 788
FatI	CATG	4 cut(s)	138, 248, 567, 784
Fnu4HI	GCNGC	3 cut(s)	201, 466, 612
FokI	GGATG	3 cut(s)	31, 253, 415
Fsp4HI	GCNGC	3 cut(s)	201, 466, 612
FspBI	CTAG	4 cut(s)	399, 426, 537, 545
GlaI	GCGC	2 cut(s)	356, 644
GluI	GCNGC	3 cut(s)	201, 466, 612
GsuI	CTGGAG	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	358
HhaI	GCGC	2 cut(s)	357, 645
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	142, 252, 571, 788
Hin6I	GCGC	2 cut(s)	355, 643
HinP1I	GCGC	2 cut(s)	355, 643
HinfI	GANTC	2 cut(s)	271, 571
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	2 cut(s)	213, 290
Hpy188I	TCNGA	2 cut(s)	174, 423
Hpy188III	TCNNGA	4 cut(s)	268, 349, 479, 568
Hpy8I	GTNNAC	2 cut(s)	213, 290
HpyAV	CCTTC	1 cut(s)	785
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	2 cut(s)	106, 375
HpyCH4V	TGCA	9 cut(s)	44, 142, 248, 406, 449, 468, 611, 698, 784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	7 cut(s)	26, 64, 163, 171, 350, 394, 756
HpySE526I	ACGT	2 cut(s)	106, 375
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	4 cut(s)	142, 252, 571, 788
HspAI	GCGC	2 cut(s)	355, 643
KasI	GGCGCC	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	553, 633, 705
LmnI	GCTCC	2 cut(s)	395, 600
LpnPI	CCDG	8 cut(s)	69, 91, 267, 329, 362, 577, 591, 653
Lsp1109I	GCAGC	2 cut(s)	452, 623
LweI	GCATC	3 cut(s)	53, 393, 685
MaeI	CTAG	4 cut(s)	399, 426, 537, 545
MaeII	ACGT	2 cut(s)	106, 375
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	3 cut(s)	555, 635, 707
MboI	GATC	3 cut(s)	553, 633, 705
MboII	GAAGA	2 cut(s)	138, 172
MfeI	CAATTG	1 cut(s)	646
MflI	RGATCY	1 cut(s)	633
MluCI	AATT	6 cut(s)	158, 491, 563, 646, 657, 729
Mly113I	GGCGCC	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	580
MmeI	TCCRAC	1 cut(s)	611
MnlI	CCTC	9 cut(s)	122, 160, 180, 278, 345, 368, 403, 475, 585
Mph1103I	ATGCAT	2 cut(s)	250, 700
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	1 cut(s)	790
MunI	CAATTG	1 cut(s)	646
MwoI	GCNNNNNNNGC	1 cut(s)	41
NarI	GGCGCC	1 cut(s)	355
NdeII	GATC	3 cut(s)	553, 633, 705
NlaIII	CATG	4 cut(s)	142, 252, 571, 788
NlaIV	GGNNCC	3 cut(s)	261, 356, 596
NsiI	ATGCAT	2 cut(s)	250, 700
NspI	RCATGY	2 cut(s)	252, 788
PaeI	GCATGC	1 cut(s)	788
PagI	TCATGA	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	202, 467, 613
PleI	GAGTC	1 cut(s)	579
PluTI	GGCGCC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	579
Ppu21I	YACGTR	1 cut(s)	376
PpuMI	RGGWCCY	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	346
PspN4I	GGNNCC	3 cut(s)	261, 356, 596
PspPI	GGNCC	1 cut(s)	346
PspPPI	RGGWCCY	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	633
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	790
SatI	GCNGC	3 cut(s)	201, 466, 612
Sau3AI	GATC	3 cut(s)	553, 633, 705
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	580
SfaNI	GCATC	3 cut(s)	53, 393, 685
SfcI	CTRYAG	1 cut(s)	385
SfoI	GGCGCC	1 cut(s)	356
SinI	GGWCC	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SnaBI	TACGTA	1 cut(s)	376
SpeI	ACTAGT	1 cut(s)	536
SphI	GCATGC	1 cut(s)	788
Sse9I	AATT	6 cut(s)	158, 491, 563, 646, 657, 729
SsiI	CCGC	1 cut(s)	200
SspDI	GGCGCC	1 cut(s)	354
SspMI	CTAG	4 cut(s)	399, 426, 537, 545
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	2 cut(s)	109, 378
TaqI	TCGA	2 cut(s)	267, 556
TasI	AATT	6 cut(s)	158, 491, 563, 646, 657, 729
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	1 cut(s)	790
Tru9I	TTAA	1 cut(s)	790
TscAI	CASTG	2 cut(s)	321, 786
TseI	GCWGC	2 cut(s)	465, 611
TspDTI	ATGAA	3 cut(s)	117, 556, 726
TspGWI	ACGGA	1 cut(s)	688
TspRI	CASTG	2 cut(s)	321, 786
VpaK11BI	GGWCC	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	397
XapI	RAATTY	4 cut(s)	158, 491, 563, 657
XceI	RCATGY	2 cut(s)	252, 788
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	4 cut(s)	399, 426, 537, 545
Zsp2I	ATGCAT	2 cut(s)	250, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.