Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010202.1

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Reverse (-)

48585 .. 49380

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010202.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgctagaatatgatcggttggaattcacaagtcctcttttgaagcttgggtggctccaatggactggtgcagctatattcttttggggttggatccaccagcgcaattgtcataaaattcttggctcattacggaaaaatagagaacaaaatgatgcgtatatgatcccttatggtgattggtttgaaattgtttcatctccacactatcttgctgagatagttatatatgttggttttgtggtcgctagtggaggagtagacctcacaatctggttactactgggattcgtggtggttaacttaacgtttacagcagcgattacacataggtggtaccatcggaaattcgaaaattaccccagcaatcggtatgccattattccacttgtatactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

132

Amino Acids

15.56

Weight (kDa)

7.9

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	336
AccI	GTMKAC	2 cut(s)	261, 393
AclI	AACGTT	1 cut(s)	308
AclWI	GGATC	3 cut(s)	88, 101, 160
AcsI	RAATTY	3 cut(s)	23, 117, 347
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	43, 188
AleI	CACNNNNGTG	1 cut(s)	331
AluBI	AGCT	2 cut(s)	46, 74
AluI	AGCT	2 cut(s)	46, 74
AlwI	GGATC	3 cut(s)	88, 101, 160
ApeKI	GCWGC	2 cut(s)	71, 317
ApoI	RAATTY	3 cut(s)	23, 117, 347
Asp718I	GGTACC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	188
AsuII	TTCGAA	1 cut(s)	351
BamHI	GGATCC	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	83, 329
BccI	CCATC	1 cut(s)	348
BfaI	CTAG	2 cut(s)	5, 249
BisI	GCNGC	2 cut(s)	72, 318
BlsI	GCNGC	2 cut(s)	73, 319
BmiI	GGNNCC	3 cut(s)	56, 95, 338
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	145
BmuI	ACTGGG	1 cut(s)	293
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
Bpu14I	TTCGAA	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	70, 288
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	70, 288
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	83, 329
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	13, 93, 165
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	56, 95, 338
BspPI	GGATC	3 cut(s)	88, 101, 160
BspT104I	TTCGAA	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	70, 288
BssMI	GATC	3 cut(s)	13, 93, 165
BssNAI	GTATAC	1 cut(s)	394
Bst1107I	GTATAC	1 cut(s)	394
BstBI	TTCGAA	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	3 cut(s)	16, 96, 168
BstMBI	GATC	3 cut(s)	13, 93, 165
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	83, 329
BstX2I	RGATCY	1 cut(s)	93
BstXI	CCANNNNNNTGG	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	93
BstZ17I	GTATAC	1 cut(s)	394
CfoI	GCGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	337
CviJI	RGCY	4 cut(s)	46, 55, 74, 126
CviKI_1	RGCY	4 cut(s)	46, 55, 74, 126
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	3 cut(s)	15, 95, 167
DpnII	GATC	3 cut(s)	13, 93, 165
EcoRI	GAATTC	1 cut(s)	23
FblI	GTMKAC	2 cut(s)	261, 393
Fnu4HI	GCNGC	2 cut(s)	72, 318
Fsp4HI	GCNGC	2 cut(s)	72, 318
FspBI	CTAG	2 cut(s)	5, 249
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	72, 318
GsaI	CCCAGC	1 cut(s)	366
HhaI	GCGC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	1 cut(s)	288
HpaI	GTTAAC	1 cut(s)	301
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	4 cut(s)	262, 301, 312, 394
Hpy188I	TCNGA	1 cut(s)	345
Hpy8I	GTNNAC	4 cut(s)	262, 301, 312, 394
HpyCH4IV	ACGT	1 cut(s)	308
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	308
HspAI	GCGC	1 cut(s)	103
KpnI	GGTACC	1 cut(s)	340
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	13, 93, 165
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	5 cut(s)	51, 113, 259, 269, 376
Lsp1109I	GCAGC	2 cut(s)	83, 329
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	5, 249
MaeII	ACGT	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	3 cut(s)	15, 95, 167
MboI	GATC	3 cut(s)	13, 93, 165
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	1 cut(s)	93
MluCI	AATT	6 cut(s)	23, 106, 117, 189, 347, 355
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	3 cut(s)	45, 248, 275
MseI	TTAA	2 cut(s)	300, 305
MslI	CAYNNNNRTG	1 cut(s)	331
MunI	CAATTG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	3 cut(s)	13, 93, 165
NlaIV	GGNNCC	3 cut(s)	56, 95, 338
NspV	TTCGAA	1 cut(s)	351
OliI	CACNNNNGTG	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	288
PkrI	GCNGC	2 cut(s)	73, 319
Psp1406I	AACGTT	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	362
PspN4I	GGNNCC	3 cut(s)	56, 95, 338
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	2 cut(s)	300, 305
SatI	GCNGC	2 cut(s)	72, 318
Sau3AI	GATC	3 cut(s)	13, 93, 165
SetI	ASST	5 cut(s)	48, 76, 267, 311, 335
SfaNI	GCATC	1 cut(s)	145
SfuI	TTCGAA	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	331
Sse9I	AATT	6 cut(s)	23, 106, 117, 189, 347, 355
SspMI	CTAG	2 cut(s)	5, 249
TaiI	ACGT	1 cut(s)	311
TaqI	TCGA	1 cut(s)	351
TasI	AATT	6 cut(s)	23, 106, 117, 189, 347, 355
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	300, 305
Tru9I	TTAA	2 cut(s)	300, 305
TseI	GCWGC	2 cut(s)	71, 317
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	1 cut(s)	148
XapI	RAATTY	3 cut(s)	23, 117, 347
XmiI	GTMKAC	2 cut(s)	261, 393
XspI	CTAG	2 cut(s)	5, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.