Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Forward (+)

15700352 .. 15701843

Gene Structure 1492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGTCGGTTTTGATGATGATGGTTATGGCTGTGGTTAGTGAGACTAATTGTGTTGTAAAGTTTGTAACTTTGCCTAATTTTCTGTCAGCTTTTAAATATGAGGTTAAAAAGTCTGCGAATTTGCCCATCTGGTTACTCTTTGGTTTTGTGGCTGCTAATCTGACATACGCGGCTGGAGAAACGCACCGTTGGTATCTCGCAAAGTTTGAGAATTATCCGGCTAATCGGCATGCCATTTTCCCTTATGTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006489 GO:0006490 GO:0006629 GO:0006644 GO:0006694 GO:0006702 GO:0006720 GO:0006793 GO:0006796 GO:0006807 GO:0007124 GO:0008150 GO:0008152 GO:0008202 GO:0008209 GO:0008299 GO:0008300 GO:0008610 GO:0008654 GO:0009056 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010817 GO:0012505 GO:0016020 GO:0016021 GO:0016042 GO:0016049 GO:0016093 GO:0016094 GO:0016095 GO:0016229 GO:0016491 GO:0016627 GO:0016628 GO:0019348 GO:0019408 GO:0019538 GO:0019637 GO:0030176 GO:0030447 GO:0031224 GO:0031227 GO:0031984 GO:0033765 GO:0034645 GO:0034754 GO:0036211 GO:0040007 GO:0042175 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044182 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046164 GO:0046165 GO:0046465 GO:0055114 GO:0065007 GO:0065008 GO:0070085 GO:0070783 GO:0071704 GO:0090407 GO:0098827 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901616 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

84

Amino Acids

9.68

Weight (kDa)

9.17

Isoelectric Point (pI)

31.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	40 - 84	9.4e-10	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	170
AciI	CCGC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	118
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	13, 134
BcoDI	GTCTC	1 cut(s)	35
BisI	GCNGC	2 cut(s)	153, 171
BlsI	GCNGC	2 cut(s)	154, 172
BpmI	CTGGAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	35
BspACI	CCGC	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	170
BstMAI	GTCTC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	233
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	231
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	5 cut(s)	29, 89, 152, 173, 221
CviKI_1	RGCY	5 cut(s)	29, 89, 152, 173, 221
DraI	TTTAAA	1 cut(s)	94
FaeI	CATG	1 cut(s)	233
FaiI	YATR	5 cut(s)	26, 99, 166, 231, 246
FatI	CATG	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	153, 171
Fsp4HI	GCNGC	2 cut(s)	153, 171
GluI	GCNGC	2 cut(s)	153, 171
GsuI	CTGGAG	1 cut(s)	195
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	1 cut(s)	233
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	162
Hpy8I	GTNNAC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	233
LpnPI	CCDG	3 cut(s)	115, 159, 231
Lsp1109I	GCAGC	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	64, 132
MluCI	AATT	4 cut(s)	46, 76, 118, 211
MnlI	CCTC	1 cut(s)	94
MseI	TTAA	2 cut(s)	93, 105
MspI	CCGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	170
NlaIII	CATG	1 cut(s)	233
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	154, 172
SaqAI	TTAA	2 cut(s)	93, 105
SatI	GCNGC	2 cut(s)	153, 171
SetI	ASST	2 cut(s)	91, 105
SgeI	CNNG	6 cut(s)	142, 181, 186, 209, 230, 242
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	4 cut(s)	46, 76, 118, 211
SsiI	CCGC	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	188
TasI	AATT	4 cut(s)	46, 76, 118, 211
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	93, 105
Tru9I	TTAA	2 cut(s)	93, 105
TseI	GCWGC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	118
XceI	RCATGY	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.