Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Reverse (-)

25658441 .. 25661818

Gene Structure 3378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGAGGTGGGGCTTGTTGCGCTGCTCAGAACTGCGTGGATTGCAGCGACATTGCCTTTACTCATAGCTTCATTGCCCTTTTCTTGGCTCAACCCTGTTCATAAAACCGTTTTGGCGTTTGCCAAGAGAGGGAAGACCATGTCTTCTTCAAGGAGATTCACAGTTCCTCAAAAGTTCTTCTGCCATTTCTATGTGCTGGCTGTTGTGTGGACAACCCTACTTCTTGTTACAACTTGGATGTATGCATATAAAATCGTGCCAATGTATGTGGACCCATTTCTTTATCCTACATTCGCCAGCCGCTTTACTGGAGGTTCACATATCATTTCCTGGCGCAAGTCTCCATCAGTTCCTATGGGTTATAGATATAGCGTCTGGCGTTCTGTCATTTTGCTTTTGTTGATGGAAGTTCAAGTTGTGAAGCGGCTTATTGAGACAATATATGTATTCAAGTATAGCTCCACTGCTAGGATGCACATCTTTGGGTATCTGACTGGCCTCTTTTTCTACACAGCTGCACCCTTGTCACTTTGCTGCAATAATTTTCTGGAGGTCTATAACTTTTCCGTTAATGGAGTGGCTGAATTTATTGTGAAAGGCAAGAAGAATGCTATGCAAGATCTGGATTTTGATTCTTTGGAATTTATTAGTTCTTTTCTGAAGCTTGGTTGGCTCCAGTGGATTGGTGCTGCTTTATTCTTTTGGGGTTGGATCCATCAGCGCCGCTGTCATGAAATTCTTGGCTCATTACGAGAACACGGTGAACAAAATGTATATGTGATTCCTCATGGGGATTGGTTTAAAATTGTATCATCTCCACATTATCTTGCTGAGATAGTTATATATGCCGGTCTTGTGGTTGCTAGTGGAGGAGCAGACCTCACAATCTGGTTACTATTTGGATTCGTGGTGTCAAACCTGGTGTTTGCAGCAGCAGAAACACATAGGTGGTACCTTCAAAAGTTCAGAAGTTACCCCAGAAATCGGCGTGCCATTATTCCATTTTTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

337

Amino Acids

38.92

Weight (kDa)

9.69

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	226 - 337	4e-27	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	951
AccB1I	GGYRCC	1 cut(s)	951
AciI	CCGC	3 cut(s)	301, 424, 724
AclWI	GGATC	2 cut(s)	706, 719
AcsI	RAATTY	3 cut(s)	584, 641, 735
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	1 cut(s)	953
AfiI	CCNNNNNNNGG	4 cut(s)	84, 129, 468, 984
AgsI	TTSAA	4 cut(s)	150, 413, 451, 959
AjnI	CCWGG	2 cut(s)	329, 918
AleI	CACNNNNGTG	1 cut(s)	946
AluBI	AGCT	4 cut(s)	68, 459, 515, 664
AluI	AGCT	4 cut(s)	68, 459, 515, 664
Alw26I	GTCTC	2 cut(s)	345, 428
AlwI	GGATC	2 cut(s)	706, 719
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	7 cut(s)	22, 44, 515, 534, 689, 929, 932
ApoI	RAATTY	3 cut(s)	584, 641, 735
Asp718I	GGTACC	1 cut(s)	951
AspLEI	GCGC	3 cut(s)	22, 336, 723
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	773
AvaII	GGWCC	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	711
BanI	GGYRCC	1 cut(s)	951
BbsI	GAAGAC	2 cut(s)	135, 140
BbvI	GCAGC	7 cut(s)	9, 56, 502, 521, 676, 941, 944
BccI	CCATC	3 cut(s)	352, 397, 723
BciT130I	CCWGG	2 cut(s)	331, 920
BcoDI	GTCTC	2 cut(s)	345, 428
BfaI	CTAG	2 cut(s)	468, 864
BfoI	RGCGCY	1 cut(s)	724
BglII	AGATCT	1 cut(s)	619
Bme1390I	CCNGG	2 cut(s)	331, 920
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	4 cut(s)	273, 674, 713, 953
BmrFI	CCNGG	2 cut(s)	331, 920
BmsI	GCATC	1 cut(s)	462
BpiI	GAAGAC	2 cut(s)	135, 140
BplI	GAGNNNNNCTC	2 cut(s)	864, 896
BpmI	CTGGAG	3 cut(s)	330, 569, 659
BsaBI	GATNNNNATC	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 129, 468, 984
Bse118I	RCCGGY	1 cut(s)	848
Bse1I	ACTGG	3 cut(s)	313, 499, 676
Bse3DI	GCAATG	2 cut(s)	50, 71
Bse8I	GATNNNNATC	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	331, 920
BseGI	GGATG	2 cut(s)	243, 477
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	4 cut(s)	84, 129, 468, 984
BseMI	GCAATG	2 cut(s)	50, 71
BseMII	CTCAG	2 cut(s)	40, 822
BseNI	ACTGG	3 cut(s)	313, 499, 676
BseRI	GAGGAG	1 cut(s)	885
BseXI	GCAGC	7 cut(s)	9, 56, 502, 521, 676, 941, 944
BsgI	GTGCAG	1 cut(s)	501
BshFI	GGCC	1 cut(s)	498
BshNI	GGYRCC	1 cut(s)	951
BsiSI	CCGG	1 cut(s)	849
BslI	CCNNNNNNNGG	4 cut(s)	84, 129, 468, 984
BsmAI	GTCTC	2 cut(s)	345, 428
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	498
Bsp143I	GATC	2 cut(s)	619, 711
BspACI	CCGC	3 cut(s)	301, 424, 724
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	2 cut(s)	39, 823
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	4 cut(s)	273, 674, 713, 953
BspPI	GGATC	2 cut(s)	706, 719
BspT107I	GGYRCC	1 cut(s)	951
BsrDI	GCAATG	2 cut(s)	50, 71
BsrFI	RCCGGY	1 cut(s)	848
BsrI	ACTGG	3 cut(s)	313, 499, 676
BssAI	RCCGGY	1 cut(s)	848
BssMI	GATC	2 cut(s)	619, 711
Bst2UI	CCWGG	2 cut(s)	331, 920
Bst4CI	ACNGT	3 cut(s)	109, 163, 761
BstC8I	GCNNGC	3 cut(s)	198, 298, 990
BstDEI	CTNAG	2 cut(s)	26, 831
BstF5I	GGATG	2 cut(s)	243, 477
BstH2I	RGCGCY	1 cut(s)	724
BstHHI	GCGC	3 cut(s)	22, 336, 723
BstKTI	GATC	2 cut(s)	622, 714
BstMAI	GTCTC	2 cut(s)	345, 428
BstMBI	GATC	2 cut(s)	619, 711
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 41, 670
BstNI	CCWGG	2 cut(s)	331, 920
BstSCI	CCNGG	2 cut(s)	329, 918
BstV1I	GCAGC	7 cut(s)	9, 56, 502, 521, 676, 941, 944
BstV2I	GAAGAC	2 cut(s)	135, 140
BstX2I	RGATCY	2 cut(s)	619, 711
BstXI	CCANNNNNNTGG	1 cut(s)	683
BstYI	RGATCY	2 cut(s)	619, 711
BsuRI	GGCC	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	243, 477
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	462, 683
Cac8I	GCNNGC	3 cut(s)	198, 298, 990
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	3 cut(s)	22, 336, 723
Cfr10I	RCCGGY	1 cut(s)	848
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	361
CsiI	ACCWGGT	1 cut(s)	918
Csp6I	GTAC	1 cut(s)	952
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviAII	CATG	3 cut(s)	139, 731, 788
CviQI	GTAC	1 cut(s)	952
DdeI	CTNAG	2 cut(s)	26, 831
DpnI	GATC	2 cut(s)	621, 713
DpnII	GATC	2 cut(s)	619, 711
DraI	TTTAAA	1 cut(s)	802
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	680
EcoRII	CCWGG	2 cut(s)	329, 918
EcoT22I	ATGCAT	1 cut(s)	247
FaeI	CATG	3 cut(s)	142, 734, 791
FatI	CATG	3 cut(s)	138, 730, 787
FokI	GGATG	2 cut(s)	250, 484
FspBI	CTAG	2 cut(s)	468, 864
GlaI	GCGC	3 cut(s)	21, 335, 722
GsuI	CTGGAG	3 cut(s)	330, 569, 659
HaeII	RGCGCY	1 cut(s)	724
HaeIII	GGCC	1 cut(s)	498
HapII	CCGG	1 cut(s)	849
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	3 cut(s)	22, 336, 723
Hin1II	CATG	3 cut(s)	142, 734, 791
Hin6I	GCGC	3 cut(s)	20, 334, 721
HinP1I	GCGC	3 cut(s)	20, 334, 721
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	4 cut(s)	156, 632, 781, 903
HpaII	CCGG	1 cut(s)	849
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	4 cut(s)	210, 271, 317, 764
Hpy188I	TCNGA	4 cut(s)	29, 492, 660, 968
Hpy188III	TCNNGA	3 cut(s)	548, 623, 731
Hpy8I	GTNNAC	4 cut(s)	210, 271, 317, 764
HpyAV	CCTTC	1 cut(s)	965
HpyCH4III	ACNGT	3 cut(s)	109, 163, 761
HpyCH4V	TGCA	7 cut(s)	44, 245, 475, 518, 537, 616, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 41, 670
HpyF3I	CTNAG	2 cut(s)	26, 831
Hsp92II	CATG	3 cut(s)	142, 734, 791
HspAI	GCGC	3 cut(s)	20, 334, 721
KpnI	GGTACC	1 cut(s)	955
Kzo9I	GATC	2 cut(s)	619, 711
LmnI	GCTCC	3 cut(s)	464, 678, 872
Lsp1109I	GCAGC	7 cut(s)	9, 56, 502, 521, 676, 941, 944
LweI	GCATC	1 cut(s)	462
MabI	ACCWGGT	1 cut(s)	918
MaeI	CTAG	2 cut(s)	468, 864
MaeIII	GTNAC	4 cut(s)	226, 525, 891, 971
MalI	GATC	2 cut(s)	621, 713
MboI	GATC	2 cut(s)	619, 711
MboII	GAAGA	5 cut(s)	135, 138, 145, 169, 616
MflI	RGATCY	2 cut(s)	619, 711
MluCI	AATT	5 cut(s)	541, 584, 641, 735, 804
MmeI	TCCRAC	1 cut(s)	689
MnlI	CCTC	8 cut(s)	122, 177, 305, 509, 544, 795, 863, 890
Mph1103I	ATGCAT	1 cut(s)	247
MseI	TTAA	2 cut(s)	570, 801
MslI	CAYNNNNRTG	2 cut(s)	189, 946
MspA1I	CMGCKG	2 cut(s)	515, 726
MspI	CCGG	1 cut(s)	849
MspR9I	CCNGG	2 cut(s)	331, 920
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	2 cut(s)	331, 920
MwoI	GCNNNNNNNGC	3 cut(s)	19, 41, 670
NdeII	GATC	2 cut(s)	619, 711
NlaIII	CATG	3 cut(s)	142, 734, 791
NlaIV	GGNNCC	4 cut(s)	273, 674, 713, 953
NmuCI	GTSAC	1 cut(s)	525
NsiI	ATGCAT	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	946
PagI	TCATGA	1 cut(s)	730
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	4 cut(s)	156, 632, 781, 903
PflFI	GACNNNGTC	1 cut(s)	139
Psp6I	CCWGG	2 cut(s)	329, 918
PspGI	CCWGG	2 cut(s)	329, 918
PspN4I	GGNNCC	4 cut(s)	273, 674, 713, 953
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	619, 711
PsyI	GACNNNGTC	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	953
RsaNI	GTAC	1 cut(s)	952
RseI	CAYNNNNRTG	2 cut(s)	189, 946
SaqAI	TTAA	2 cut(s)	570, 801
Sau3AI	GATC	2 cut(s)	619, 711
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	331, 920
SexAI	ACCWGGT	1 cut(s)	918
SfaNI	GCATC	1 cut(s)	462
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	189, 946
Sse9I	AATT	5 cut(s)	541, 584, 641, 735, 804
SsiI	CCGC	3 cut(s)	301, 424, 724
SspMI	CTAG	2 cut(s)	468, 864
StyD4I	CCNGG	2 cut(s)	329, 918
TaaI	ACNGT	3 cut(s)	109, 163, 761
TasI	AATT	5 cut(s)	541, 584, 641, 735, 804
TauI	GCSGC	3 cut(s)	303, 427, 726
TfiI	GAWTC	4 cut(s)	156, 632, 781, 903
Tru1I	TTAA	2 cut(s)	570, 801
Tru9I	TTAA	2 cut(s)	570, 801
TscAI	CASTG	2 cut(s)	469, 683
TseFI	GTSAC	1 cut(s)	525
TseI	GCWGC	7 cut(s)	22, 44, 515, 534, 689, 929, 932
Tsp45I	GTSAC	1 cut(s)	525
TspDTI	ATGAA	3 cut(s)	60, 89, 747
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	2 cut(s)	469, 683
Tth111I	GACNNNGTC	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	3 cut(s)	584, 641, 735
XspI	CTAG	2 cut(s)	468, 864
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.