Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Reverse (-)

9400096 .. 9402222

Gene Structure 2127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10631.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGATTTGCCAAGCGAGGGAAGATCATGCAATCTTCCTCTCATCAGAAATTCACAGTTCCTCAGAAGTTCTTCGGTCATTTCTATGTAGCGGCTGTTGCGTGGACAACTGTACTTTTAGTTACAACTTGGACGTATGCATATAATATGGTGCCATTCACCAGCCAGTCTACTGAAGATTCACATATCATTAGCGTTTGGCGTTCTGTGTTTCTGCTTTTGTTGATGGAAGTTCAGGTCCTGAGGCGGCTCTTTGAGACACTATACGTCTTCAACTATAGCTCCTCTGCTAGGTTGCACATTTTCGGATATCTGACTGGCTATTTTTTCTACACACTTGCCCCTATATCACTTTGCTACAACCACGCTCACGAGGTCTACAAATTTTCTGTAAATGGAGTGGCTGAGATCCTTGTCAAAGGCAATACTACTAGTGTGCAAGAGTTTTACTTGTTGGAATTCTTAAGTCCTTTTTTGAAGCTCGGGTGGCTCCAGTGGACTGGTGCAGCTATATTCTTTTGGGGATGGATCCACCAGCGCAATTGCCATAAAATTCTTGGCTCGTTACGGAAGAACAGAACACAAAATGACTCGTATATGATCCCTTATGGTGATTGGTTTGAACTTGTTTCATCTCCACACTTTCTTGCTGAGATAGTTATATATGTTGGATTTGTGGTCGCTAGTGGAGGAGCAGACCTCACAGTCTGGTTACTACTGGGATTCACGGTGTCTAACTTAACATTTGCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

252

Amino Acids

28.87

Weight (kDa)

8.99

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	165 - 251	1.8e-14	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	704
AccB1I	GGYRCC	1 cut(s)	151
AccI	GTMKAC	2 cut(s)	170, 378
AciI	CCGC	2 cut(s)	92, 247
AclWI	GGATC	4 cut(s)	403, 523, 536, 595
AcsI	RAATTY	4 cut(s)	50, 383, 458, 552
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	18, 291
AflII	CTTAAG	1 cut(s)	463
AgsI	TTSAA	3 cut(s)	274, 478, 623
AhlI	ACTAGT	1 cut(s)	431
AluBI	AGCT	3 cut(s)	282, 481, 509
AluI	AGCT	3 cut(s)	282, 481, 509
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	4 cut(s)	403, 523, 536, 595
AlwNI	CAGNNNCTG	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	482
ApeKI	GCWGC	2 cut(s)	506, 749
ApoI	RAATTY	4 cut(s)	50, 383, 458, 552
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	151, 623
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	238
AxyI	CCTNAGG	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	2 cut(s)	220, 519
BcoDI	GTCTC	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	3 cut(s)	291, 432, 684
BfmI	CTRYAG	1 cut(s)	277
BfrI	CTTAAG	1 cut(s)	463
BisI	GCNGC	4 cut(s)	93, 248, 507, 750
BlsI	GCNGC	4 cut(s)	94, 249, 508, 751
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	3 cut(s)	153, 491, 530
BmrI	ACTGGG	1 cut(s)	728
BmuI	ACTGGG	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	262
BplI	GAGNNNNNCTC	2 cut(s)	684, 716
BpmI	CTGGAG	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 291
Bse1I	ACTGG	5 cut(s)	166, 322, 493, 505, 723
Bse21I	CCTNAGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	530
BseLI	CCNNNNNNNGG	2 cut(s)	18, 291
BseMII	CTCAG	4 cut(s)	77, 233, 396, 642
BseNI	ACTGG	5 cut(s)	166, 322, 493, 505, 723
BseRI	GAGGAG	2 cut(s)	274, 705
BseXI	GCAGC	1 cut(s)	518
BsgI	GTGCAG	1 cut(s)	525
BshNI	GGYRCC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	18, 291
BsmAI	GTCTC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	482
Bsp143I	GATC	4 cut(s)	24, 408, 528, 600
BspACI	CCGC	2 cut(s)	92, 247
BspCNI	CTCAG	4 cut(s)	76, 234, 397, 643
BspLI	GGNNCC	3 cut(s)	153, 491, 530
BspPI	GGATC	4 cut(s)	403, 523, 536, 595
BspT107I	GGYRCC	1 cut(s)	151
BspTI	CTTAAG	1 cut(s)	463
BsrI	ACTGG	5 cut(s)	166, 322, 493, 505, 723
BssMI	GATC	4 cut(s)	24, 408, 528, 600
BssSI	CACGAG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	371
Bst4CI	ACNGT	4 cut(s)	58, 112, 706, 730
BstAFI	CTTAAG	1 cut(s)	463
BstDEI	CTNAG	4 cut(s)	63, 242, 405, 651
BstENI	CCTNNNNNAGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	530
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	4 cut(s)	27, 411, 531, 603
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	24, 408, 528, 600
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 487
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	518
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	2 cut(s)	408, 528
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	2 cut(s)	408, 528
Bsu36I	CCTNAGG	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	530
BtsIMutI	CAGTG	1 cut(s)	500
CaiI	CAGNNNCTG	1 cut(s)	241
CfoI	GCGC	1 cut(s)	540
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	1 cut(s)	28
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	4 cut(s)	63, 242, 405, 651
DpnI	GATC	4 cut(s)	26, 410, 530, 602
DpnII	GATC	4 cut(s)	24, 408, 528, 600
DrdI	GACNNNNNNGTC	1 cut(s)	704
DseDI	GACNNNNNNGTC	1 cut(s)	704
Eco32I	GATATC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	195
Eco81I	CCTNAGG	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	482
EcoNI	CCTNNNNNAGG	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	458
EcoRV	GATATC	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	142
FaeI	CATG	1 cut(s)	31
FatI	CATG	1 cut(s)	27
FblI	GTMKAC	2 cut(s)	170, 378
Fnu4HI	GCNGC	4 cut(s)	93, 248, 507, 750
FokI	GGATG	1 cut(s)	537
Fsp4HI	GCNGC	4 cut(s)	93, 248, 507, 750
FspBI	CTAG	3 cut(s)	291, 432, 684
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	4 cut(s)	93, 248, 507, 750
GsuI	CTGGAG	1 cut(s)	476
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HinfI	GANTC	3 cut(s)	179, 590, 723
HphI	GGTGA	2 cut(s)	151, 623
Hpy166II	GTNNAC	4 cut(s)	105, 171, 379, 498
Hpy188I	TCNGA	4 cut(s)	48, 66, 308, 315
Hpy188III	TCNNGA	2 cut(s)	241, 371
Hpy8I	GTNNAC	4 cut(s)	105, 171, 379, 498
HpyCH4III	ACNGT	4 cut(s)	58, 112, 706, 730
HpyCH4IV	ACGT	2 cut(s)	134, 267
HpyCH4V	TGCA	6 cut(s)	31, 140, 298, 439, 506, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 487
HpyF3I	CTNAG	4 cut(s)	63, 242, 405, 651
HpySE526I	ACGT	2 cut(s)	134, 267
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	24, 408, 528, 600
LmnI	GCTCC	3 cut(s)	287, 495, 692
Lsp1109I	GCAGC	1 cut(s)	518
MaeI	CTAG	3 cut(s)	291, 432, 684
MaeII	ACGT	2 cut(s)	134, 267
MaeIII	GTNAC	3 cut(s)	121, 564, 711
MalI	GATC	4 cut(s)	26, 410, 530, 602
MboI	GATC	4 cut(s)	24, 408, 528, 600
MboII	GAAGA	6 cut(s)	27, 34, 64, 188, 262, 583
MfeI	CAATTG	1 cut(s)	541
MflI	RGATCY	2 cut(s)	408, 528
MluCI	AATT	5 cut(s)	50, 383, 458, 541, 552
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	2 cut(s)	435, 649
MnlI	CCTC	8 cut(s)	11, 49, 72, 237, 295, 367, 683, 710
Mph1103I	ATGCAT	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	2 cut(s)	464, 740
MslI	CAYNNNNRTG	1 cut(s)	84
MspCI	CTTAAG	1 cut(s)	463
MunI	CAATTG	1 cut(s)	541
MwoI	GCNNNNNNNGC	2 cut(s)	98, 487
NdeII	GATC	4 cut(s)	24, 408, 528, 600
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	3 cut(s)	153, 491, 530
NsiI	ATGCAT	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	179, 723
PkrI	GCNGC	4 cut(s)	94, 249, 508, 751
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	153, 491, 530
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	241
PsuI	RGATCY	2 cut(s)	408, 528
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	464, 740
SatI	GCNGC	4 cut(s)	93, 248, 507, 750
Sau3AI	GATC	4 cut(s)	24, 408, 528, 600
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	584
SetI	ASST	9 cut(s)	137, 240, 270, 284, 296, 378, 483, 511, 702
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	5 cut(s)	50, 383, 458, 541, 552
SsiI	CCGC	2 cut(s)	92, 247
SspMI	CTAG	3 cut(s)	291, 432, 684
TaaI	ACNGT	4 cut(s)	58, 112, 706, 730
TaiI	ACGT	2 cut(s)	137, 270
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	5 cut(s)	50, 383, 458, 541, 552
TatI	WGTACW	1 cut(s)	112
TauI	GCSGC	2 cut(s)	95, 250
TfiI	GAWTC	2 cut(s)	179, 723
Tru1I	TTAA	2 cut(s)	464, 740
Tru9I	TTAA	2 cut(s)	464, 740
TscAI	CASTG	1 cut(s)	500
TseI	GCWGC	2 cut(s)	506, 749
TspDTI	ATGAA	1 cut(s)	621
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	1 cut(s)	500
Vha464I	CTTAAG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	289
XapI	RAATTY	4 cut(s)	50, 383, 458, 552
XcmI	CCANNNNNNNNNTGG	1 cut(s)	554
XmiI	GTMKAC	2 cut(s)	170, 378
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	3 cut(s)	291, 432, 684
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.