Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00018

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Forward (+)

650 .. 2376

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGGCTTGTTGGGTTGCTGAGAATAGCTTGGATTGCATCCACACTGCCTTTTCTCTTAGCTTCTGTACCCTGTTCAGGGCTGAACTGGCTTTATGAACGTCTTATGAAATTCTCAGTTCCTCAGAAGTTCTTCATTCATTTCTACATAGCGGCTGTTGTGTGGACAGCTTTACTTCTTGTTACGACTTGGATGTATGCATGTAATGTGGTGCCATTCGAGAATCACTCTACTGGAGGTTCACATATCTTTAGTGTTTGGCGTTCAGTGTTTCTGCTTTTATTGATGGAAGTTCAGGTCCTGAGGCGCATCTTTGAGACACTATACGTATTCAACTATATTGCACCCTTATCACTTTGCTGCAACCATGCTCTTGAGGTCTATAAATTTTCTCTAAAAGGAGTGGCTGAGTTCCTTTTCAAAGGCAATACTAGTATGCTAGAATATGATCGGTTGGAATTCACAAGTCCTCTTTTGAAGCTTGGGTGGCTCCAATGGACTGGTGCAGCTATATTCTTTTGGGGTTGGATCCACCAGCGCAATTGTCATAAAATTCTTGGCTCATTACGGAAAAAAGAGAAACAAAATGATGCGTATATGATCCCTATGGTTATATATGTTGGTTTTGTG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

210

Amino Acids

24.38

Weight (kDa)

9.24

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	3 cut(s)	523, 536, 595
AcsI	RAATTY	4 cut(s)	110, 386, 458, 552
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	77, 78
AgsI	TTSAA	3 cut(s)	334, 421, 478
AhlI	ACTAGT	1 cut(s)	431
AluBI	AGCT	5 cut(s)	29, 62, 170, 481, 509
AluI	AGCT	5 cut(s)	29, 62, 170, 481, 509
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	3 cut(s)	523, 536, 595
AlwNI	CAGNNNCTG	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	360, 506
ApoI	RAATTY	4 cut(s)	110, 386, 458, 552
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	2 cut(s)	309, 540
AspS9I	GGNCC	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	298
AxyI	CCTNAGG	1 cut(s)	302
BamHI	GGATCC	1 cut(s)	528
BanI	GGYRCC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	347, 518
BccI	CCATC	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	311
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	2 cut(s)	432, 440
BisI	GCNGC	3 cut(s)	153, 361, 507
BlsI	GCNGC	3 cut(s)	154, 362, 508
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	3 cut(s)	213, 491, 530
BmsI	GCATC	3 cut(s)	47, 318, 580
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 78
Bse1I	ACTGG	3 cut(s)	92, 238, 505
Bse21I	CCTNAGG	1 cut(s)	302
BseGI	GGATG	2 cut(s)	38, 198
BseLI	CCNNNNNNNGG	2 cut(s)	77, 78
BseMII	CTCAG	5 cut(s)	11, 129, 137, 293, 399
BseNI	ACTGG	3 cut(s)	92, 238, 505
BseXI	GCAGC	2 cut(s)	347, 518
BsgI	GTGCAG	1 cut(s)	525
BshNI	GGYRCC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	77, 78
BsmAI	GTCTC	1 cut(s)	311
Bsp143I	GATC	3 cut(s)	448, 528, 600
BspACI	CCGC	1 cut(s)	152
BspCNI	CTCAG	5 cut(s)	12, 128, 136, 294, 400
BspLI	GGNNCC	3 cut(s)	213, 491, 530
BspPI	GGATC	3 cut(s)	523, 536, 595
BspT107I	GGYRCC	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	92, 238, 505
BssMI	GATC	3 cut(s)	448, 528, 600
BstBAI	YACGTR	1 cut(s)	328
BstDEI	CTNAG	6 cut(s)	20, 58, 115, 123, 302, 408
BstF5I	GGATG	2 cut(s)	38, 198
BstHHI	GCGC	2 cut(s)	309, 540
BstKTI	GATC	3 cut(s)	451, 531, 603
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	448, 528, 600
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 88, 487
BstNSI	RCATGY	1 cut(s)	204
BstSNI	TACGTA	1 cut(s)	328
BstV1I	GCAGC	2 cut(s)	347, 518
BstX2I	RGATCY	1 cut(s)	528
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	528
Bsu36I	CCTNAGG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	38, 198
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	2 cut(s)	44, 273
CaiI	CAGNNNCTG	1 cut(s)	301
CfoI	GCGC	2 cut(s)	309, 540
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	2 cut(s)	201, 368
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	6 cut(s)	20, 58, 115, 123, 302, 408
DpnI	GATC	3 cut(s)	450, 530, 602
DpnII	GATC	3 cut(s)	448, 528, 600
Eco105I	TACGTA	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	298
Eco81I	CCTNAGG	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	458
EcoT22I	ATGCAT	1 cut(s)	202
FaeI	CATG	2 cut(s)	204, 371
FatI	CATG	2 cut(s)	200, 367
Fnu4HI	GCNGC	3 cut(s)	153, 361, 507
FokI	GGATG	2 cut(s)	25, 205
Fsp4HI	GCNGC	3 cut(s)	153, 361, 507
FspBI	CTAG	2 cut(s)	432, 440
GlaI	GCGC	2 cut(s)	308, 539
GluI	GCNGC	3 cut(s)	153, 361, 507
GsuI	CTGGAG	1 cut(s)	255
HhaI	GCGC	2 cut(s)	309, 540
Hin1II	CATG	2 cut(s)	204, 371
Hin6I	GCGC	2 cut(s)	307, 538
HinP1I	GCGC	2 cut(s)	307, 538
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	165, 242
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	3 cut(s)	220, 301, 374
Hpy8I	GTNNAC	2 cut(s)	165, 242
HpyCH4IV	ACGT	2 cut(s)	100, 327
HpyCH4V	TGCA	5 cut(s)	38, 200, 344, 363, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 88, 487
HpyF3I	CTNAG	6 cut(s)	20, 58, 115, 123, 302, 408
HpySE526I	ACGT	2 cut(s)	100, 327
Hsp92II	CATG	2 cut(s)	204, 371
HspAI	GCGC	2 cut(s)	307, 538
Kzo9I	GATC	3 cut(s)	448, 528, 600
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	8 cut(s)	63, 73, 85, 219, 281, 314, 486, 548
Lsp1109I	GCAGC	2 cut(s)	347, 518
LweI	GCATC	3 cut(s)	47, 318, 580
MaeI	CTAG	2 cut(s)	432, 440
MaeII	ACGT	2 cut(s)	100, 327
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	3 cut(s)	450, 530, 602
MboI	GATC	3 cut(s)	448, 528, 600
MboII	GAAGA	1 cut(s)	124
MfeI	CAATTG	1 cut(s)	541
MflI	RGATCY	1 cut(s)	528
MluCI	AATT	5 cut(s)	110, 386, 458, 541, 552
MmeI	TCCRAC	2 cut(s)	435, 506
MnlI	CCTC	5 cut(s)	132, 230, 297, 370, 480
Mph1103I	ATGCAT	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	131
MunI	CAATTG	1 cut(s)	541
MwoI	GCNNNNNNNGC	3 cut(s)	35, 88, 487
NdeII	GATC	3 cut(s)	448, 528, 600
NlaIII	CATG	2 cut(s)	204, 371
NlaIV	GGNNCC	3 cut(s)	213, 491, 530
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	154, 362, 508
Ppu21I	YACGTR	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	213, 491, 530
PspPI	GGNCC	1 cut(s)	298
PspPPI	RGGWCCY	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	528
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SatI	GCNGC	3 cut(s)	153, 361, 507
Sau3AI	GATC	3 cut(s)	448, 528, 600
Sau96I	GGNCC	1 cut(s)	298
SfaNI	GCATC	3 cut(s)	47, 318, 580
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SnaBI	TACGTA	1 cut(s)	328
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	5 cut(s)	110, 386, 458, 541, 552
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	2 cut(s)	432, 440
TaiI	ACGT	2 cut(s)	103, 330
TaqI	TCGA	1 cut(s)	219
TasI	AATT	5 cut(s)	110, 386, 458, 541, 552
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	223
TscAI	CASTG	2 cut(s)	51, 273
TseI	GCWGC	2 cut(s)	360, 506
TspDTI	ATGAA	4 cut(s)	111, 122, 124, 128
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	2 cut(s)	51, 273
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	4 cut(s)	110, 386, 458, 552
XceI	RCATGY	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	2 cut(s)	432, 440
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.