Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Forward (+)

19950297 .. 19951643

Gene Structure 1347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG153500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGGTGGGGCTTGTTGCGCTGCTCAGAACAGCGTGGATTGCAGCGACATTGCCTTTACTCATAGCTTCGTTGCCCTTTTCTTGGCTCAACCCTGTTCATAAAACCGTTTTGGCGTTTGCCAAGAGAGGGAAGACCATGTCTTCTTCAAGGAGATTCACAGTTCCTCAAAAGTTCTTCTGCCATTTCTATGTGCTGGCTGTTGTGTGGACAACCCTACTTCTTGTTACAACTTGGATGTATGCATATAAAATCGTGCCAATGTATGTGGACCCATTTCTTTATCCTACATTCGCCAGCCGCTTTACTGGAGGTTCACATATCATTTCCTGGCGCAAGTCTCCATCAGTTCCTATGGGTTATAGATATAGCGTCTGGCGTTCTGTCTTTTTGCTTTTGCTGATGGAAGTTCAAGTTGTGAAGCGGCTTATTGAGACAATATATGTATTCAAGTATAGCTCCACTGCTAGGATGCACATCTTTGGGTATCTGACTGGCCTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

168

Amino Acids

19.43

Weight (kDa)

10.29

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	301, 424
AfiI	CCNNNNNNNGG	3 cut(s)	84, 129, 468
AgsI	TTSAA	3 cut(s)	150, 413, 451
AjnI	CCWGG	1 cut(s)	329
AluBI	AGCT	2 cut(s)	68, 459
AluI	AGCT	2 cut(s)	68, 459
Alw26I	GTCTC	2 cut(s)	345, 428
AoxI	GGCC	1 cut(s)	496
ApeKI	GCWGC	2 cut(s)	22, 44
AspLEI	GCGC	2 cut(s)	22, 336
AspS9I	GGNCC	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	271
BbsI	GAAGAC	2 cut(s)	135, 140
BbvI	GCAGC	2 cut(s)	9, 56
BccI	CCATC	2 cut(s)	352, 397
BciT130I	CCWGG	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	345, 428
BfaI	CTAG	1 cut(s)	468
BisI	GCNGC	4 cut(s)	23, 45, 301, 425
BlsI	GCNGC	4 cut(s)	24, 46, 302, 426
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	462
BpiI	GAAGAC	2 cut(s)	135, 140
BpmI	CTGGAG	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 129, 468
Bse1I	ACTGG	2 cut(s)	313, 499
Bse3DI	GCAATG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	243, 477
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	3 cut(s)	84, 129, 468
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	313, 499
BseXI	GCAGC	2 cut(s)	9, 56
BshFI	GGCC	1 cut(s)	498
BslI	CCNNNNNNNGG	3 cut(s)	84, 129, 468
BsmAI	GTCTC	2 cut(s)	345, 428
BsnI	GGCC	1 cut(s)	498
BspACI	CCGC	2 cut(s)	301, 424
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	313, 499
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	109, 163
BstC8I	GCNNGC	2 cut(s)	198, 298
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	243, 477
BstHHI	GCGC	2 cut(s)	22, 336
BstMAI	GTCTC	2 cut(s)	345, 428
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 41
BstNI	CCWGG	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	9, 56
BstV2I	GAAGAC	2 cut(s)	135, 140
BsuRI	GGCC	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	243, 477
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	198, 298
CfoI	GCGC	2 cut(s)	22, 336
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	361
CspCI	CAANNNNNGTGG	2 cut(s)	249, 284
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	8 cut(s)	13, 68, 88, 200, 300, 427, 459, 498
CviKI_1	RGCY	8 cut(s)	13, 68, 88, 200, 300, 427, 459, 498
DdeI	CTNAG	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	329
EcoT22I	ATGCAT	1 cut(s)	247
FaeI	CATG	1 cut(s)	142
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	23, 45, 301, 425
FokI	GGATG	2 cut(s)	250, 484
Fsp4HI	GCNGC	4 cut(s)	23, 45, 301, 425
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	2 cut(s)	21, 335
GluI	GCNGC	4 cut(s)	23, 45, 301, 425
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	498
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	2 cut(s)	22, 336
Hin1II	CATG	1 cut(s)	142
Hin6I	GCGC	2 cut(s)	20, 334
HinP1I	GCGC	2 cut(s)	20, 334
HinfI	GANTC	1 cut(s)	156
Hpy166II	GTNNAC	3 cut(s)	210, 271, 317
Hpy188I	TCNGA	2 cut(s)	29, 492
Hpy8I	GTNNAC	3 cut(s)	210, 271, 317
HpyCH4III	ACNGT	2 cut(s)	109, 163
HpyCH4V	TGCA	3 cut(s)	44, 245, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 41
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	142
HspAI	GCGC	2 cut(s)	20, 334
LmnI	GCTCC	1 cut(s)	464
LpnPI	CCDG	8 cut(s)	108, 182, 294, 310, 316, 343, 361, 480
Lsp1109I	GCAGC	2 cut(s)	9, 56
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	4 cut(s)	135, 138, 145, 169
MnlI	CCTC	3 cut(s)	122, 177, 305
Mph1103I	ATGCAT	1 cut(s)	247
MslI	CAYNNNNRTG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	19, 41
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	273
NsiI	ATGCAT	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	139
PkrI	GCNGC	4 cut(s)	24, 46, 302, 426
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	189
SatI	GCNGC	4 cut(s)	23, 45, 301, 425
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	331
SetI	ASST	4 cut(s)	9, 70, 316, 461
SfaNI	GCATC	1 cut(s)	462
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	189
SsiI	CCGC	2 cut(s)	301, 424
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	2 cut(s)	109, 163
TauI	GCSGC	2 cut(s)	303, 427
TfiI	GAWTC	1 cut(s)	156
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	2 cut(s)	22, 44
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	469
Tth111I	GACNNNGTC	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	271
XspI	CTAG	1 cut(s)	468
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.