Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Reverse (-)

9402992 .. 9406099

Gene Structure 3108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGGATGGAGGTGGGTGTTGTTGAGTTGGTGAGAACTGGTTGGATTGCAGGGACATTGCCTATACTGATAGCTTCGTTGCCCTTGTCTTGCCTCAACTCCTTTCATGACATCGTTTTGGGTTTTGCCAAGAGAGGCAAGATCTTGCAATCTTCTTCTTCTAAGAGATTCACAGTTCCTCAAAAGTTCTTCTGGCATTTCTATGTGCTGGCTGTCGTGTGGACAACCCTACTTCTTGCAACAACTTGGACATATGCATATAAAATGGTGCCACTGAATGCGGACCCATTTCTTTATTCTACATTCGCCAACCGCATTACTGGAGGTTCACATATCCTCTCCTGGCGCAAGTCTCCATCAATTCCTATAGGTTATAGATATAGTGTCTGGCGTTCTGTCTTTTTGCTTTTGTTGATGGAAGTTCAAGTTGTGAAGCGCCTTATTGAGACAATATATGTATTCAAGTATAGCTCCACTGCTAGGATGCACATCTTTGGGTATCTGACTGGCCTCTTTTTCTATACAGCTGCACCCTTGTCACTTTGCTGCAATCATATTCCAGAGGTGTATAACTATTCCGTTAATGGAGTGGCTGAGTTTATTGTCAAAGGCAAGAAGTATACTATGCAAGATCTGGATTTTAATTGGTTGGAATTTACTAGTTCTCTTCTGAAGCTTGGTTGGCTCCAGTGGATTGGTGCTGCTATATTCTTTTGGGGTTGGTTTCATCAGGGCCGCTGTCATGATATTCTTGGCTCATTACGAGAAGACAGTGAACAAAGTGACGAATATGTGATTCCTCATGGTGATTGGTTTAAATTTGTCTCATCTCCACATTATCTTGCTGAGATAGTTATATATGCTGGTCTTGTGGTTGCTAGTGGAGGAGCAGACCTCACAATCTGGTTATTATTTGGATTCGTGGTGTCGAACTTGGTATTTACAGCAGCAGAAACACATAGGTGGTACCTTCAGAAGTTCAAAAGTTACCCAAGAAATCGGCGTGCCATTATTCCATTCTTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

343

Amino Acids

39.36

Weight (kDa)

9.27

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	227 - 342	2.2e-26	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	966
AccB1I	GGYRCC	2 cut(s)	268, 966
AccI	GTMKAC	1 cut(s)	620
AciI	CCGC	3 cut(s)	281, 313, 736
AcsI	RAATTY	2 cut(s)	653, 818
AcuI	CTGAAG	2 cut(s)	692, 956
AfaI	GTAC	1 cut(s)	968
AfiI	CCNNNNNNNGG	1 cut(s)	480
AgsI	TTSAA	3 cut(s)	425, 463, 982
AhlI	ACTAGT	1 cut(s)	659
AjnI	CCWGG	1 cut(s)	341
AleI	CACNNNNGTG	1 cut(s)	961
AluBI	AGCT	4 cut(s)	74, 471, 527, 676
AluI	AGCT	4 cut(s)	74, 471, 527, 676
Alw26I	GTCTC	3 cut(s)	357, 440, 829
AoxI	GGCC	2 cut(s)	508, 733
ApeKI	GCWGC	4 cut(s)	527, 546, 701, 947
ApoI	RAATTY	2 cut(s)	653, 818
Asp718I	GGTACC	1 cut(s)	966
AspLEI	GCGC	2 cut(s)	348, 438
AspS9I	GGNCC	2 cut(s)	283, 733
AsuHPI	GGTGA	2 cut(s)	43, 818
AvaII	GGWCC	1 cut(s)	283
BanI	GGYRCC	2 cut(s)	268, 966
BbsI	GAAGAC	1 cut(s)	774
BbvI	GCAGC	4 cut(s)	514, 533, 688, 959
BccI	CCATC	2 cut(s)	364, 409
BciT130I	CCWGG	1 cut(s)	343
BcoDI	GTCTC	3 cut(s)	357, 440, 829
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	3 cut(s)	480, 660, 879
BfmI	CTRYAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	439
BglII	AGATCT	2 cut(s)	141, 631
BisI	GCNGC	5 cut(s)	528, 547, 702, 736, 948
BlsI	GCNGC	5 cut(s)	529, 548, 703, 737, 949
Bme1390I	CCNGG	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	283, 733
BmiI	GGNNCC	4 cut(s)	270, 285, 686, 968
BmrFI	CCNGG	1 cut(s)	343
BmsI	GCATC	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	774
BplI	GAGNNNNNCTC	2 cut(s)	879, 911
BpmI	CTGGAG	2 cut(s)	342, 671
BsaBI	GATNNNNATC	1 cut(s)	488
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse1I	ACTGG	4 cut(s)	43, 325, 511, 688
Bse3DI	GCAATG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	12, 489
BseJI	GATNNNNATC	1 cut(s)	488
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	2 cut(s)	585, 837
BseNI	ACTGG	4 cut(s)	43, 325, 511, 688
BseRI	GAGGAG	1 cut(s)	900
BseXI	GCAGC	4 cut(s)	514, 533, 688, 959
BsgI	GTGCAG	1 cut(s)	513
BshFI	GGCC	2 cut(s)	510, 735
BshNI	GGYRCC	2 cut(s)	268, 966
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	3 cut(s)	357, 440, 829
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	510, 735
Bsp143I	GATC	2 cut(s)	141, 631
BspACI	CCGC	3 cut(s)	281, 313, 736
BspANI	GGCC	2 cut(s)	510, 735
BspCNI	CTCAG	2 cut(s)	586, 838
BspHI	TCATGA	2 cut(s)	106, 742
BspLI	GGNNCC	4 cut(s)	270, 285, 686, 968
BspT107I	GGYRCC	2 cut(s)	268, 966
BsrDI	GCAATG	1 cut(s)	56
BsrI	ACTGG	4 cut(s)	43, 325, 511, 688
BssMI	GATC	2 cut(s)	141, 631
BssNAI	GTATAC	1 cut(s)	621
Bst1107I	GTATAC	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	2 cut(s)	175, 773
Bst6I	CTCTTC	1 cut(s)	672
BstC8I	GCNNGC	2 cut(s)	210, 1005
BstDEI	CTNAG	3 cut(s)	162, 594, 846
BstF5I	GGATG	2 cut(s)	12, 489
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	2 cut(s)	348, 438
BstKTI	GATC	2 cut(s)	144, 634
BstMAI	GTCTC	3 cut(s)	357, 440, 829
BstMBI	GATC	2 cut(s)	141, 631
BstMWI	GCNNNNNNNGC	1 cut(s)	682
BstNI	CCWGG	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	4 cut(s)	514, 533, 688, 959
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	2 cut(s)	141, 631
BstXI	CCANNNNNNTGG	1 cut(s)	695
BstYI	RGATCY	2 cut(s)	141, 631
BstZ17I	GTATAC	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	510, 735
BtsCI	GGATG	2 cut(s)	12, 489
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	4 cut(s)	272, 474, 695, 778
Cac8I	GCNNGC	2 cut(s)	210, 1005
CciI	TCATGA	2 cut(s)	106, 742
CfoI	GCGC	2 cut(s)	348, 438
Cfr13I	GGNCC	2 cut(s)	283, 733
Csp6I	GTAC	1 cut(s)	967
CviAII	CATG	3 cut(s)	107, 743, 803
CviQI	GTAC	1 cut(s)	967
DdeI	CTNAG	3 cut(s)	162, 594, 846
DpnI	GATC	2 cut(s)	143, 633
DpnII	GATC	2 cut(s)	141, 631
DraI	TTTAAA	1 cut(s)	817
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	2 cut(s)	692, 956
EcoRII	CCWGG	1 cut(s)	341
EcoT22I	ATGCAT	1 cut(s)	259
FaeI	CATG	3 cut(s)	110, 746, 806
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	3 cut(s)	106, 742, 802
FauNDI	CATATG	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	5 cut(s)	528, 547, 702, 736, 948
FokI	GGATG	2 cut(s)	19, 496
Fsp4HI	GCNGC	5 cut(s)	528, 547, 702, 736, 948
FspBI	CTAG	3 cut(s)	480, 660, 879
GlaI	GCGC	2 cut(s)	347, 437
GluI	GCNGC	5 cut(s)	528, 547, 702, 736, 948
GsuI	CTGGAG	2 cut(s)	342, 671
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	2 cut(s)	510, 735
HhaI	GCGC	2 cut(s)	348, 438
Hin1II	CATG	3 cut(s)	110, 746, 806
Hin6I	GCGC	2 cut(s)	346, 436
HinP1I	GCGC	2 cut(s)	346, 436
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	3 cut(s)	168, 796, 918
HphI	GGTGA	2 cut(s)	43, 818
Hpy166II	GTNNAC	4 cut(s)	222, 329, 621, 776
Hpy188I	TCNGA	3 cut(s)	504, 672, 975
Hpy188III	TCNNGA	4 cut(s)	107, 560, 635, 743
Hpy8I	GTNNAC	4 cut(s)	222, 329, 621, 776
HpyAV	CCTTC	1 cut(s)	980
HpyCH4III	ACNGT	2 cut(s)	175, 773
HpyCH4V	TGCA	8 cut(s)	50, 148, 239, 257, 487, 530, 549, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	682
HpyF3I	CTNAG	3 cut(s)	162, 594, 846
Hsp92II	CATG	3 cut(s)	110, 746, 806
HspAI	GCGC	2 cut(s)	346, 436
KpnI	GGTACC	1 cut(s)	970
Kzo9I	GATC	2 cut(s)	141, 631
LmnI	GCTCC	3 cut(s)	476, 690, 887
Lsp1109I	GCAGC	4 cut(s)	514, 533, 688, 959
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	3 cut(s)	480, 660, 879
MaeIII	GTNAC	3 cut(s)	537, 782, 986
MalI	GATC	2 cut(s)	143, 633
MboI	GATC	2 cut(s)	141, 631
MboII	GAAGA	6 cut(s)	144, 147, 150, 181, 659, 779
MflI	RGATCY	2 cut(s)	141, 631
MluCI	AATT	4 cut(s)	360, 643, 653, 818
MmeI	TCCRAC	2 cut(s)	23, 630
Mph1103I	ATGCAT	1 cut(s)	259
MseI	TTAA	3 cut(s)	582, 642, 816
MslI	CAYNNNNRTG	2 cut(s)	201, 961
MspA1I	CMGCKG	2 cut(s)	527, 738
MspR9I	CCNGG	1 cut(s)	343
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	682
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	2 cut(s)	141, 631
NlaIII	CATG	3 cut(s)	110, 746, 806
NlaIV	GGNNCC	4 cut(s)	270, 285, 686, 968
NmuCI	GTSAC	2 cut(s)	537, 782
NsiI	ATGCAT	1 cut(s)	259
OliI	CACNNNNGTG	1 cut(s)	961
PagI	TCATGA	2 cut(s)	106, 742
PctI	GAATGC	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	168, 796, 918
PkrI	GCNGC	5 cut(s)	529, 548, 703, 737, 949
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	4 cut(s)	270, 285, 686, 968
PspPI	GGNCC	2 cut(s)	283, 733
PsuI	RGATCY	2 cut(s)	141, 631
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	968
RsaNI	GTAC	1 cut(s)	967
RseI	CAYNNNNRTG	2 cut(s)	201, 961
SaqAI	TTAA	3 cut(s)	582, 642, 816
SatI	GCNGC	5 cut(s)	528, 547, 702, 736, 948
Sau3AI	GATC	2 cut(s)	141, 631
Sau96I	GGNCC	2 cut(s)	283, 733
ScrFI	CCNGG	1 cut(s)	343
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	2 cut(s)	201, 961
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	4 cut(s)	360, 643, 653, 818
SsiI	CCGC	3 cut(s)	281, 313, 736
SspMI	CTAG	3 cut(s)	480, 660, 879
StyD4I	CCNGG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	175, 773
TaqI	TCGA	1 cut(s)	929
TasI	AATT	4 cut(s)	360, 643, 653, 818
TauI	GCSGC	1 cut(s)	738
TfiI	GAWTC	3 cut(s)	168, 796, 918
Tru1I	TTAA	3 cut(s)	582, 642, 816
Tru9I	TTAA	3 cut(s)	582, 642, 816
TscAI	CASTG	4 cut(s)	279, 481, 695, 778
TseFI	GTSAC	2 cut(s)	537, 782
TseI	GCWGC	4 cut(s)	527, 546, 701, 947
Tsp45I	GTSAC	2 cut(s)	537, 782
TspDTI	ATGAA	2 cut(s)	95, 716
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	4 cut(s)	279, 481, 695, 778
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	2 cut(s)	653, 818
XmiI	GTMKAC	1 cut(s)	620
XspI	CTAG	3 cut(s)	480, 660, 879
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.