Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Forward (+)

5292846 .. 5293559

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTATATTGTGTTTCTTATCTCGATCTTCCTTGCATTCACTTTTATAATGTTCCTGACATGTGAAATATTATTACAGGGCTCATTACGACATCACAGTGAACCAAATGATGAATATGTGATTCCTCATGGTGATTGGTTTGAAATTGTTTCATCTCCACACTATCTGGCTGAGATAGTAAATATGCTGGCCTTGTGGTCGCTAGTGGAGGAACAGATCTCACAATCTGGTTACTTTTTGGATTTGTGGTACGATTTTTTTGTGCTGAAAATATACGTACACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

96

Amino Acids

11.3

Weight (kDa)

4.54

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	5 - 80	3.3e-08	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AfaI	GTAC	2 cut(s)	251, 279
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	143
AoxI	GGCC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	203
BglII	AGATCT	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	24, 216
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	163
BssMI	GATC	2 cut(s)	24, 216
Bst4CI	ACNGT	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	171
BstKTI	GATC	2 cut(s)	27, 219
BstMBI	GATC	2 cut(s)	24, 216
BstNSI	RCATGY	1 cut(s)	63
BstSNI	TACGTA	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	250, 278
CviAII	CATG	3 cut(s)	60, 128, 285
CviJI	RGCY	3 cut(s)	81, 170, 191
CviKI_1	RGCY	3 cut(s)	81, 170, 191
CviQI	GTAC	2 cut(s)	250, 278
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	26, 218
DpnII	GATC	2 cut(s)	24, 216
Eco105I	TACGTA	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	83
FaeI	CATG	3 cut(s)	63, 131, 288
FaiI	YATR	8 cut(s)	6, 47, 61, 117, 129, 185, 274, 286
FatI	CATG	3 cut(s)	59, 127, 284
FriOI	GRGCYC	1 cut(s)	83
FspBI	CTAG	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	191
Hin1II	CATG	3 cut(s)	63, 131, 288
HinfI	GANTC	1 cut(s)	121
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	2 cut(s)	101, 280
Hpy188III	TCNNGA	2 cut(s)	22, 55
Hpy8I	GTNNAC	2 cut(s)	101, 280
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	63, 131, 288
Kzo9I	GATC	2 cut(s)	24, 216
LpnPI	CCDG	5 cut(s)	62, 68, 152, 173, 213
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	26, 218
MboI	GATC	2 cut(s)	24, 216
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	144
MnlI	CCTC	2 cut(s)	135, 202
MslI	CAYNNNNRTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	24, 216
NlaIII	CATG	3 cut(s)	63, 131, 288
NspI	RCATGY	1 cut(s)	63
PciI	ACATGT	1 cut(s)	59
PctI	GAATGC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	277
PscI	ACATGT	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	2 cut(s)	251, 279
RsaNI	GTAC	2 cut(s)	250, 278
RseI	CAYNNNNRTG	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	24, 216
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	96
SnaBI	TACGTA	1 cut(s)	277
Sse9I	AATT	1 cut(s)	144
SspI	AATATT	1 cut(s)	69
SspMI	CTAG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	144
TfiI	GAWTC	1 cut(s)	121
TscAI	CASTG	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	126, 141
TspRI	CASTG	1 cut(s)	103
XceI	RCATGY	1 cut(s)	63
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.