Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Reverse (-)

11671702 .. 11675489

Gene Structure 3788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G083500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGGTGGGTCTTGTTGGGTTGCTCAGAACAGCTTGGATTGCAGCGATACTGCCTCTACTCATAGCTTCTGTACCTTCTTCTAGGCTGAGCTCATTTCATGGAGCTGTTTTGGAATTTGCCAAGAGAGGGAAGATCATGAAATCTTCTTCTCAGAAGTTCACAGTTCCTCAAAAGTTCTTCTGCCATTTCTATCTGGTGGCTGTAGTGTGGACAGCCCTACTCCTTGTTACAACTGGGATGTATGCGTATAAAACAGTGCCATTGGTTTATCCTACATTTCCCAGCCAATTGACTGGAGGTTCACACATCTTTTCATGGCATAAGTCTCATTCGATTCCTATAAGTTATAGATATGGCGTTTGGCGTTCTGTCTTTCTGCTTTTATTGATGGAAGTTCAAGTCTTGAGGCGCCTCTTTGAGACAATATATGTATTCAACTATAGCTCCTCTGCTCGGATGCACATTTTCGGATATCTGACTGGACTCTTCTTCTACACAGCAGCACCGTTGTCACTTTGCTGCAATAATGCTCTGGAGGTGTATAAATTTTCATTGAATGCAGTGGCTGAGTTCATTGTCAAAGGCAAGACTACTATGCAACACATGGAATTTGATTGGTTGGAATTTGTGAGTTCTCTTTTGAGGCTTCGTTGGCTCCAATGGACTGGTGCAGTTATATTCTTTTGGGGCTGGATCCATCAGCGCAATTGCCATGCAATTCTTGGCTCATTACGGGAACACAGTGGACAAAATGATGAATATGTGATTCCTCATGGTGATTGGTTTGAAGTCGTTTCATCTCCACACTATCTGGCTGAGATAGTTATATATACTGGCCTTGTGGTTGCTAGTGGAGGAACAGACCCCACAATCTGGTTACTTTTTGGATTTGTGGTGTCAAACTTGGTATTTGCAGCAGCGGAAACACATAGGTGGTACCTCAAGAAGTTCAAGAATTATCCCAGTAATCGGCTTGCCATTATTCCATTTGTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

334

Amino Acids

38.14

Weight (kDa)

9.41

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	939
AccB1I	GGYRCC	2 cut(s)	411, 939
AccB7I	CCANNNNNTGG	1 cut(s)	876
AccI	GTMKAC	1 cut(s)	996
AciI	CCGC	1 cut(s)	923
AclWI	GGATC	2 cut(s)	691, 704
AcsI	RAATTY	4 cut(s)	116, 548, 611, 626
AcyI	GRCGYC	1 cut(s)	412
AfaI	GTAC	2 cut(s)	75, 941
AfiI	CCNNNNNNNGG	4 cut(s)	129, 456, 876, 972
AgsI	TTSAA	5 cut(s)	401, 439, 559, 791, 955
AleI	CACNNNNGTG	1 cut(s)	934
AluBI	AGCT	5 cut(s)	35, 68, 93, 107, 447
AluI	AGCT	5 cut(s)	35, 68, 93, 107, 447
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	2 cut(s)	333, 416
AlwI	GGATC	2 cut(s)	691, 704
AlwNI	CAGNNNCTG	1 cut(s)	569
AoxI	GGCC	1 cut(s)	838
ApeKI	GCWGC	5 cut(s)	44, 503, 522, 917, 920
ApoI	RAATTY	4 cut(s)	116, 548, 611, 626
Asp718I	GGTACC	1 cut(s)	939
AspLEI	GCGC	2 cut(s)	414, 708
AsuHPI	GGTGA	1 cut(s)	791
BamHI	GGATCC	1 cut(s)	696
BanI	GGYRCC	2 cut(s)	411, 939
BanII	GRGCYC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	5 cut(s)	56, 509, 515, 929, 932
BccI	CCATC	2 cut(s)	385, 708
BcoDI	GTCTC	2 cut(s)	333, 416
BfaI	CTAG	2 cut(s)	84, 852
BfmI	CTRYAG	2 cut(s)	204, 442
BfoI	RGCGCY	1 cut(s)	415
BisI	GCNGC	5 cut(s)	45, 504, 523, 918, 921
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	5 cut(s)	46, 505, 524, 919, 922
BmiI	GGNNCC	4 cut(s)	413, 659, 698, 941
BmrI	ACTGGG	2 cut(s)	246, 960
BmsI	GCATC	1 cut(s)	450
BmuI	ACTGGG	2 cut(s)	246, 960
BpmI	CTGGAG	2 cut(s)	318, 557
Bpu1102I	GCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	427, 929
BsaHI	GRCGYC	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 456, 876, 972
Bse1I	ACTGG	6 cut(s)	241, 301, 487, 673, 841, 966
BseGI	GGATG	2 cut(s)	246, 465
BseLI	CCNNNNNNNGG	4 cut(s)	129, 456, 876, 972
BseMII	CTCAG	5 cut(s)	40, 80, 167, 561, 810
BseNI	ACTGG	6 cut(s)	241, 301, 487, 673, 841, 966
BseRI	GAGGAG	1 cut(s)	439
BseXI	GCAGC	5 cut(s)	56, 509, 515, 929, 932
BseYI	CCCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	1 cut(s)	840
BshNI	GGYRCC	2 cut(s)	411, 939
BsiHKAI	GWGCWC	1 cut(s)	95
BslI	CCNNNNNNNGG	4 cut(s)	129, 456, 876, 972
BsmAI	GTCTC	2 cut(s)	333, 416
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	840
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	2 cut(s)	135, 696
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	923
BspANI	GGCC	1 cut(s)	840
BspCNI	CTCAG	5 cut(s)	39, 81, 166, 562, 811
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	4 cut(s)	413, 659, 698, 941
BspPI	GGATC	2 cut(s)	691, 704
BspT107I	GGYRCC	2 cut(s)	411, 939
BsrI	ACTGG	6 cut(s)	241, 301, 487, 673, 841, 966
BssMI	GATC	2 cut(s)	135, 696
BssNAI	GTATAC	1 cut(s)	997
BssNI	GRCGYC	1 cut(s)	412
Bst1107I	GTATAC	1 cut(s)	997
Bst4CI	ACNGT	4 cut(s)	166, 259, 510, 746
Bst6I	CTCTTC	1 cut(s)	494
BstACI	GRCGYC	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	978
BstDEI	CTNAG	5 cut(s)	26, 89, 153, 570, 819
BstF5I	GGATG	2 cut(s)	246, 465
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	414, 708
BstKTI	GATC	2 cut(s)	138, 699
BstMAI	GTCTC	2 cut(s)	333, 416
BstMBI	GATC	2 cut(s)	135, 696
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 655
BstSFI	CTRYAG	2 cut(s)	204, 442
BstV1I	GCAGC	5 cut(s)	56, 509, 515, 929, 932
BstX2I	RGATCY	1 cut(s)	696
BstXI	CCANNNNNNTGG	2 cut(s)	296, 668
BstYI	RGATCY	1 cut(s)	696
BstZ17I	GTATAC	1 cut(s)	997
BsuRI	GGCC	1 cut(s)	840
BtsCI	GGATG	2 cut(s)	246, 465
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	3 cut(s)	264, 570, 751
Cac8I	GCNNGC	1 cut(s)	978
CaiI	CAGNNNCTG	1 cut(s)	569
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	2 cut(s)	414, 708
Csp6I	GTAC	2 cut(s)	74, 940
CviAII	CATG	6 cut(s)	101, 139, 318, 607, 716, 776
CviQI	GTAC	2 cut(s)	74, 940
DdeI	CTNAG	5 cut(s)	26, 89, 153, 570, 819
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	2 cut(s)	137, 698
DpnII	GATC	2 cut(s)	135, 696
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
Ecl136II	GAGCTC	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	476
EcoT38I	GRGCYC	1 cut(s)	95
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
FaeI	CATG	6 cut(s)	104, 142, 321, 610, 719, 779
FatI	CATG	6 cut(s)	100, 138, 317, 606, 715, 775
FblI	GTMKAC	1 cut(s)	996
Fnu4HI	GCNGC	5 cut(s)	45, 504, 523, 918, 921
FokI	GGATG	2 cut(s)	253, 472
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	5 cut(s)	45, 504, 523, 918, 921
FspBI	CTAG	2 cut(s)	84, 852
GlaI	GCGC	2 cut(s)	413, 707
GluI	GCNGC	5 cut(s)	45, 504, 523, 918, 921
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	2 cut(s)	318, 557
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	840
HhaI	GCGC	2 cut(s)	414, 708
Hin1I	GRCGYC	1 cut(s)	412
Hin1II	CATG	6 cut(s)	104, 142, 321, 610, 719, 779
Hin6I	GCGC	2 cut(s)	412, 706
HinP1I	GCGC	2 cut(s)	412, 706
HinfI	GANTC	3 cut(s)	337, 486, 769
HphI	GGTGA	1 cut(s)	791
Hpy166II	GTNNAC	5 cut(s)	162, 213, 305, 749, 997
Hpy188I	TCNGA	5 cut(s)	29, 156, 459, 473, 480
Hpy188III	TCNNGA	5 cut(s)	139, 406, 536, 946, 955
Hpy8I	GTNNAC	5 cut(s)	162, 213, 305, 749, 997
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	4 cut(s)	166, 259, 510, 746
HpyCH4V	TGCA	8 cut(s)	44, 463, 525, 563, 601, 674, 719, 917
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 655
HpyF3I	CTNAG	5 cut(s)	26, 89, 153, 570, 819
Hsp92I	GRCGYC	1 cut(s)	412
Hsp92II	CATG	6 cut(s)	104, 142, 321, 610, 719, 779
HspAI	GCGC	2 cut(s)	412, 706
KasI	GGCGCC	1 cut(s)	411
KpnI	GGTACC	1 cut(s)	943
Kzo9I	GATC	2 cut(s)	135, 696
LmnI	GCTCC	3 cut(s)	104, 452, 663
Lsp1109I	GCAGC	5 cut(s)	56, 509, 515, 929, 932
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	2 cut(s)	84, 852
MaeIII	GTNAC	3 cut(s)	229, 513, 879
MalI	GATC	2 cut(s)	137, 698
MboI	GATC	2 cut(s)	135, 696
MboII	GAAGA	7 cut(s)	72, 138, 141, 145, 172, 481, 484
MfeI	CAATTG	2 cut(s)	290, 709
MflI	RGATCY	1 cut(s)	696
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	8 cut(s)	116, 290, 548, 611, 626, 709, 720, 958
Mly113I	GGCGCC	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	934
MspA1I	CMGCKG	1 cut(s)	923
MunI	CAATTG	2 cut(s)	290, 709
Mva1269I	GAATGC	1 cut(s)	565
MwoI	GCNNNNNNNGC	2 cut(s)	41, 655
NarI	GGCGCC	1 cut(s)	412
NdeII	GATC	2 cut(s)	135, 696
NlaIII	CATG	6 cut(s)	104, 142, 321, 610, 719, 779
NlaIV	GGNNCC	4 cut(s)	413, 659, 698, 941
NmuCI	GTSAC	1 cut(s)	513
OliI	CACNNNNGTG	1 cut(s)	934
PagI	TCATGA	1 cut(s)	138
PctI	GAATGC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	337, 769
PflMI	CCANNNNNTGG	1 cut(s)	876
PkrI	GCNGC	5 cut(s)	46, 505, 524, 919, 922
PleI	GAGTC	1 cut(s)	480
PluTI	GGCGCC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	4 cut(s)	413, 659, 698, 941
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	1 cut(s)	696
RsaI	GTAC	2 cut(s)	75, 941
RsaNI	GTAC	2 cut(s)	74, 940
RseI	CAYNNNNRTG	1 cut(s)	934
SacI	GAGCTC	1 cut(s)	95
SatI	GCNGC	5 cut(s)	45, 504, 523, 918, 921
Sau3AI	GATC	2 cut(s)	135, 696
SchI	GAGTC	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	95
SfaNI	GCATC	1 cut(s)	450
SfcI	CTRYAG	2 cut(s)	204, 442
SfoI	GGCGCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	1 cut(s)	934
SmlI	CTYRAG	2 cut(s)	406, 944
SmoI	CTYRAG	2 cut(s)	406, 944
Sse9I	AATT	8 cut(s)	116, 290, 548, 611, 626, 709, 720, 958
SsiI	CCGC	1 cut(s)	923
SspDI	GGCGCC	1 cut(s)	411
SspMI	CTAG	2 cut(s)	84, 852
SstI	GAGCTC	1 cut(s)	95
TaaI	ACNGT	4 cut(s)	166, 259, 510, 746
TaqI	TCGA	1 cut(s)	335
TasI	AATT	8 cut(s)	116, 290, 548, 611, 626, 709, 720, 958
TfiI	GAWTC	2 cut(s)	337, 769
TscAI	CASTG	3 cut(s)	264, 570, 751
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	5 cut(s)	44, 503, 522, 917, 920
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	7 cut(s)	89, 155, 306, 543, 565, 774, 789
TspRI	CASTG	3 cut(s)	264, 570, 751
Van91I	CCANNNNNTGG	1 cut(s)	876
XapI	RAATTY	4 cut(s)	116, 548, 611, 626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	722
XmiI	GTMKAC	1 cut(s)	996
XspI	CTAG	2 cut(s)	84, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.