Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Reverse (-)

25150416 .. 25151013

Gene Structure 598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTCCATATCTAATTTCTTACATTCTGGTGATGATAATGTTATATATGTTGGTTTTGTGGTCGCTAGTGGAGGAGTAGACCTCACAATCTGGTTACTACTGGGATTCGTGGTGTCTAACTTAACGTTTACAGCAGCGATTACACATAGGTGGTACCATTGGAAATTCGAAAATTACCCCAGCAATCGGTATGCCATTATTCCACTTGTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

71

Amino Acids

8.11

Weight (kDa)

6.22

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	13 - 71	1.9e-12	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	153
AccI	GTMKAC	2 cut(s)	78, 210
AclI	AACGTT	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	186
AleI	CACNNNNGTG	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	164
Asp718I	GGTACC	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	41
AsuII	TTCGAA	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	66
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	110
BmuI	ACTGGG	1 cut(s)	110
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
Bpu14I	TTCGAA	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	146
BseYI	CCCAGC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	105
BssNAI	GTATAC	1 cut(s)	211
Bst1107I	GTATAC	1 cut(s)	211
BstBI	TTCGAA	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	146
BstZ17I	GTATAC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	154
CviQI	GTAC	1 cut(s)	154
FaiI	YATR	7 cut(s)	8, 44, 46, 48, 147, 192, 211
FblI	GTMKAC	2 cut(s)	78, 210
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	135
GsaI	CCCAGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	105
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	3 cut(s)	79, 129, 211
Hpy8I	GTNNAC	3 cut(s)	79, 129, 211
HpyCH4IV	ACGT	1 cut(s)	125
HpySE526I	ACGT	1 cut(s)	125
KpnI	GGTACC	1 cut(s)	157
LpnPI	CCDG	4 cut(s)	12, 76, 86, 193
Lsp1109I	GCAGC	1 cut(s)	146
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	93
MluCI	AATT	3 cut(s)	13, 164, 172
MnlI	CCTC	2 cut(s)	65, 92
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	2 cut(s)	27, 148
NlaIV	GGNNCC	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	168
OliI	CACNNNNGTG	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	136
Psp1406I	AACGTT	1 cut(s)	125
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	2 cut(s)	27, 148
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	1 cut(s)	135
SetI	ASST	3 cut(s)	84, 128, 152
SfuI	TTCGAA	1 cut(s)	168
SgeI	CNNG	6 cut(s)	39, 78, 103, 113, 121, 192
SmiMI	CAYNNNNRTG	2 cut(s)	27, 148
Sse9I	AATT	3 cut(s)	13, 164, 172
SspMI	CTAG	1 cut(s)	66
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	168
TasI	AATT	3 cut(s)	13, 164, 172
TfiI	GAWTC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TseI	GCWGC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	164
XmiI	GTMKAC	2 cut(s)	78, 210
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.