Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002229

Physical Location & Seq

Genomic Coordinates Forward (+)

47165617 .. 47167685

Gene Structure 2069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAGGTGGGGCTTGTTGGGTTGCTGAGAACAGCTTGGATTGCATCAATACTGCCTATACTCTTAGCTTCTGTACCCTGTTCAAGGCTGAACTCGTTTTATGAACGTCTTATGGTATTTGCCAAGCGAGGGAAAATCATGCAATCTTCCTCGCAGAAATTCTCAGTTCCTCAGAAGTTCTTCATTCATTTCTACATAGCGGCTGTTGTGTGGACAACTTTACTTCTTGTTACGACTTGGATGTATGCATGTAATGTGGTGCCATTCGAGAACCACTCTACTGGAGGTTCACATATCATTGGTGTTTGGCGTTCAGTATTTCTGCTTTTATTGATGGAAGTTCAGGTCCTGAGGCGCCTCTTTGAGACACTATACGTATTCAACTATAGCTCCTCGGCTAGGATGCACATTTTAGGATATCTGACTAGCTACATTTTCTACACAGTTGCACCCTTATCACTTTGCTGCAACCACGCTCTTGAGGTCTATAAATTTTCTCTAAATGGAGTGGCTGAGTTACTTGTCAAAGGCAATACTAGTATGCTGGAATATGATCGGTTGGAATTCATAAGTCCTCTTTTGAAGCTTGGGTGGCTCCAATGGACTAGTGCAGCTATATTCTTTTGGGGTTGGATCCACCAGCGCAATTGTCATAAAATTCTTGGCTCCTTACGGAAAAACAGAGAACAAAATGATGCGTATATGATCCCTTATGGTGATTGGTTTGAAATTGTTTCATCTCCACACTATCTTGCTGAGATAGTCATATATGTTGGTTTTGTGGTCGCTAGTGGAGGAGTAGACCTCACAATCTGGTTACTACTGGGATTCGTGGTGGCTAACTTAACGTTTACAGCAGCGATTACACATAGGTGGTACCATCGGAAATTCGAAAATTACCCCAGCAATCGGTATGCCATTATTCCACTCGTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006066 GO:0006464 GO:0006486 GO:0006487 GO:0006629 GO:0006720 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016093 GO:0016229 GO:0016491 GO:0016627 GO:0019538 GO:0033765 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 map00140

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

312

Amino Acids

35.99

Weight (kDa)

9.21

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	202 - 312	2.3e-27	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72590 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT2G16530 AT3G43840 AT3G43840
fragaria_vesca	FvH4_2g10631 FvH4_2g10631 FvH4_2g10631 FvH4_2g10640 FvH4_2g10640 FvH4_2g10640
malus_domestica	MD05G1054700.v1.1 MD10G1062200.v1.1
prunus_persica	Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1 Prupe.8G083500_v2.0.a1
pyrus_communis	pycom05g04490 pycom05g04510 pycom10g04790
rosa_chinensis	RchiOBHm_Chr6g0268311 RchiOBHm_Chr6g0268321 RchiOBHm_Chr6g0268341
rosa_multiflora	Rmu_sc0009812.1_g000007 Rmu_sc0010202.1_g000011
rosa_roxburghii	Rroxscaffold_7G00199860 Rroxscaffold_7G00199880
rosa_rugosa	Rorug06G0040400 Rorug06G0040400 Rorug06G0040400
rosa_samantha	Rh6AG160500 Rh6BG164800 Rh6BG164900 Rh6CG153500 Rh6DG150600
rosa_wichuraiana	Rw0G000500 Rw6G013880 Rw6G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	876
AccB1I	GGYRCC	3 cut(s)	259, 354, 876
AccI	GTMKAC	2 cut(s)	801, 933
AciI	CCGC	1 cut(s)	200
AclI	AACGTT	1 cut(s)	848
AclWI	GGATC	3 cut(s)	628, 641, 700
AcsI	RAATTY	5 cut(s)	158, 491, 563, 657, 887
AcyI	GRCGYC	1 cut(s)	355
AfaI	GTAC	2 cut(s)	75, 878
AfiI	CCNNNNNNNGG	4 cut(s)	84, 129, 399, 909
AgsI	TTSAA	4 cut(s)	84, 382, 583, 728
AhlI	ACTAGT	2 cut(s)	536, 605
AleI	CACNNNNGTG	1 cut(s)	871
AluBI	AGCT	6 cut(s)	35, 68, 390, 429, 586, 614
AluI	AGCT	6 cut(s)	35, 68, 390, 429, 586, 614
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	3 cut(s)	628, 641, 700
AlwNI	CAGNNNCTG	1 cut(s)	349
ApeKI	GCWGC	3 cut(s)	465, 611, 857
ApoI	RAATTY	5 cut(s)	158, 491, 563, 657, 887
Asp700I	GAANNNNTTC	1 cut(s)	179
Asp718I	GGTACC	1 cut(s)	876
AspLEI	GCGC	2 cut(s)	357, 645
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	728
AsuII	TTCGAA	1 cut(s)	891
AvaII	GGWCC	1 cut(s)	346
AxyI	CCTNAGG	1 cut(s)	350
BamHI	GGATCC	1 cut(s)	633
BanI	GGYRCC	3 cut(s)	259, 354, 876
BbvI	GCAGC	3 cut(s)	452, 623, 869
BccI	CCATC	2 cut(s)	328, 888
BcoDI	GTCTC	1 cut(s)	359
BcuI	ACTAGT	2 cut(s)	536, 605
BfaI	CTAG	5 cut(s)	399, 426, 537, 606, 789
BfmI	CTRYAG	1 cut(s)	385
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	4 cut(s)	201, 466, 612, 858
BlsI	GCNGC	4 cut(s)	202, 467, 613, 859
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	6 cut(s)	261, 356, 596, 635, 667, 878
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	3 cut(s)	53, 393, 685
BmuI	ACTGGG	1 cut(s)	833
BplI	GAGNNNNNCTC	4 cut(s)	260, 292, 789, 821
BpmI	CTGGAG	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	376
BsaHI	GRCGYC	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 129, 399, 909
Bse1I	ACTGG	2 cut(s)	286, 828
Bse21I	CCTNAGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	2 cut(s)	246, 408
BseLI	CCNNNNNNNGG	4 cut(s)	84, 129, 399, 909
BseMII	CTCAG	6 cut(s)	17, 177, 185, 341, 504, 747
BseNI	ACTGG	2 cut(s)	286, 828
BseRI	GAGGAG	2 cut(s)	382, 810
BseXI	GCAGC	3 cut(s)	452, 623, 869
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	1 cut(s)	630
BshNI	GGYRCC	3 cut(s)	259, 354, 876
BslI	CCNNNNNNNGG	4 cut(s)	84, 129, 399, 909
BsmAI	GTCTC	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	891
Bsp143I	GATC	3 cut(s)	553, 633, 705
BspACI	CCGC	1 cut(s)	200
BspCNI	CTCAG	6 cut(s)	18, 176, 184, 342, 505, 748
BspLI	GGNNCC	6 cut(s)	261, 356, 596, 635, 667, 878
BspPI	GGATC	3 cut(s)	628, 641, 700
BspT104I	TTCGAA	1 cut(s)	891
BspT107I	GGYRCC	3 cut(s)	259, 354, 876
BsrI	ACTGG	2 cut(s)	286, 828
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	3 cut(s)	553, 633, 705
BssNAI	GTATAC	1 cut(s)	934
BssNI	GRCGYC	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	934
Bst4CI	ACNGT	1 cut(s)	445
BstACI	GRCGYC	1 cut(s)	355
BstBAI	YACGTR	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	891
BstDEI	CTNAG	7 cut(s)	26, 64, 163, 171, 350, 513, 756
BstENI	CCTNNNNNAGG	2 cut(s)	82, 397
BstF5I	GGATG	2 cut(s)	246, 408
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	2 cut(s)	357, 645
BstKTI	GATC	3 cut(s)	556, 636, 708
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	3 cut(s)	553, 633, 705
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 592
BstNSI	RCATGY	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	385
BstSNI	TACGTA	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	452, 623, 869
BstX2I	RGATCY	1 cut(s)	633
BstXI	CCANNNNNNTGG	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	633
BstZ17I	GTATAC	1 cut(s)	934
Bsu36I	CCTNAGG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	246, 408
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	2 cut(s)	357, 645
Cfr13I	GGNCC	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	74, 877
CviAII	CATG	2 cut(s)	139, 249
CviQI	GTAC	2 cut(s)	74, 877
DdeI	CTNAG	7 cut(s)	26, 64, 163, 171, 350, 513, 756
DinI	GGCGCC	1 cut(s)	356
DpnI	GATC	3 cut(s)	555, 635, 707
DpnII	GATC	3 cut(s)	553, 633, 705
Eco105I	TACGTA	1 cut(s)	376
Eco32I	GATATC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	346
Eco81I	CCTNAGG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	2 cut(s)	82, 397
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRI	GAATTC	1 cut(s)	563
EcoRV	GATATC	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	250
EgeI	GGCGCC	1 cut(s)	356
EheI	GGCGCC	1 cut(s)	356
FaeI	CATG	2 cut(s)	142, 252
FatI	CATG	2 cut(s)	138, 248
FblI	GTMKAC	2 cut(s)	801, 933
Fnu4HI	GCNGC	4 cut(s)	201, 466, 612, 858
FokI	GGATG	2 cut(s)	253, 415
Fsp4HI	GCNGC	4 cut(s)	201, 466, 612, 858
FspBI	CTAG	5 cut(s)	399, 426, 537, 606, 789
GlaI	GCGC	2 cut(s)	356, 644
GluI	GCNGC	4 cut(s)	201, 466, 612, 858
GsaI	CCCAGC	1 cut(s)	906
GsuI	CTGGAG	1 cut(s)	303
HaeII	RGCGCY	1 cut(s)	358
HhaI	GCGC	2 cut(s)	357, 645
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	142, 252
Hin6I	GCGC	2 cut(s)	355, 643
HinP1I	GCGC	2 cut(s)	355, 643
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	1 cut(s)	828
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	5 cut(s)	213, 290, 802, 852, 934
Hpy188I	TCNGA	3 cut(s)	174, 423, 885
Hpy188III	TCNNGA	3 cut(s)	268, 349, 479
Hpy8I	GTNNAC	5 cut(s)	213, 290, 802, 852, 934
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4IV	ACGT	3 cut(s)	106, 375, 848
HpyCH4V	TGCA	7 cut(s)	44, 142, 248, 406, 449, 468, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 592
HpyF3I	CTNAG	7 cut(s)	26, 64, 163, 171, 350, 513, 756
HpySE526I	ACGT	3 cut(s)	106, 375, 848
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	2 cut(s)	142, 252
HspAI	GCGC	2 cut(s)	355, 643
KasI	GGCGCC	1 cut(s)	354
KpnI	GGTACC	1 cut(s)	880
Kzo9I	GATC	3 cut(s)	553, 633, 705
LmnI	GCTCC	3 cut(s)	395, 600, 671
LpnPI	CCDG	9 cut(s)	91, 267, 329, 362, 530, 653, 799, 809, 916
Lsp1109I	GCAGC	3 cut(s)	452, 623, 869
LweI	GCATC	3 cut(s)	53, 393, 685
MaeI	CTAG	5 cut(s)	399, 426, 537, 606, 789
MaeII	ACGT	3 cut(s)	106, 375, 848
MaeIII	GTNAC	3 cut(s)	229, 516, 816
MalI	GATC	3 cut(s)	555, 635, 707
MboI	GATC	3 cut(s)	553, 633, 705
MboII	GAAGA	2 cut(s)	138, 172
MfeI	CAATTG	1 cut(s)	646
MflI	RGATCY	1 cut(s)	633
MluCI	AATT	8 cut(s)	158, 491, 563, 646, 657, 729, 887, 895
Mly113I	GGCGCC	1 cut(s)	355
MmeI	TCCRAC	2 cut(s)	540, 611
Mph1103I	ATGCAT	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	1 cut(s)	845
MslI	CAYNNNNRTG	1 cut(s)	871
MunI	CAATTG	1 cut(s)	646
MwoI	GCNNNNNNNGC	2 cut(s)	41, 592
NarI	GGCGCC	1 cut(s)	355
NdeII	GATC	3 cut(s)	553, 633, 705
NlaIII	CATG	2 cut(s)	142, 252
NlaIV	GGNNCC	6 cut(s)	261, 356, 596, 635, 667, 878
NmeAIII	GCCGAG	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	891
OliI	CACNNNNGTG	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	828
PkrI	GCNGC	4 cut(s)	202, 467, 613, 859
PluTI	GGCGCC	1 cut(s)	358
Ppu21I	YACGTR	1 cut(s)	376
PpuMI	RGGWCCY	1 cut(s)	346
Psp1406I	AACGTT	1 cut(s)	848
Psp5II	RGGWCCY	1 cut(s)	346
PspFI	CCCAGC	1 cut(s)	902
PspN4I	GGNNCC	6 cut(s)	261, 356, 596, 635, 667, 878
PspPI	GGNCC	1 cut(s)	346
PspPPI	RGGWCCY	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	633
RsaI	GTAC	2 cut(s)	75, 878
RsaNI	GTAC	2 cut(s)	74, 877
RseI	CAYNNNNRTG	1 cut(s)	871
SaqAI	TTAA	1 cut(s)	845
SatI	GCNGC	4 cut(s)	201, 466, 612, 858
Sau3AI	GATC	3 cut(s)	553, 633, 705
Sau96I	GGNCC	1 cut(s)	346
SfaNI	GCATC	3 cut(s)	53, 393, 685
SfcI	CTRYAG	1 cut(s)	385
SfoI	GGCGCC	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	891
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	871
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SnaBI	TACGTA	1 cut(s)	376
SpeI	ACTAGT	2 cut(s)	536, 605
Sse9I	AATT	8 cut(s)	158, 491, 563, 646, 657, 729, 887, 895
SsiI	CCGC	1 cut(s)	200
SspDI	GGCGCC	1 cut(s)	354
SspMI	CTAG	5 cut(s)	399, 426, 537, 606, 789
TaaI	ACNGT	1 cut(s)	445
TaiI	ACGT	3 cut(s)	109, 378, 851
TaqI	TCGA	2 cut(s)	267, 891
TasI	AATT	8 cut(s)	158, 491, 563, 646, 657, 729, 887, 895
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	828
Tru1I	TTAA	1 cut(s)	845
Tru9I	TTAA	1 cut(s)	845
TseI	GCWGC	3 cut(s)	465, 611, 857
TspDTI	ATGAA	5 cut(s)	117, 172, 176, 556, 726
TspGWI	ACGGA	1 cut(s)	688
VpaK11BI	GGWCC	1 cut(s)	346
XagI	CCTNNNNNAGG	2 cut(s)	82, 397
XapI	RAATTY	5 cut(s)	158, 491, 563, 657, 887
XceI	RCATGY	1 cut(s)	252
XmiI	GTMKAC	2 cut(s)	801, 933
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	5 cut(s)	399, 426, 537, 606, 789
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.