AT1G78880

membrane protein At1g16860-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001653
Physical Location & Seq
Reverse (-)
29652633 .. 29655949
3317 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78880.1

Sequence Viewer

Length: 1407 bp
ATGGGTTCGAGATACGCATCTCACCAGCTCAGCAATGGGCTTTTTGTGTCTGGCCGGCCAGAGCAACCCAAAGAAAAGCCTCCAACAATGAGCTCAGTAGCCATGCCATACACCGGTGGTGATATCAAGAAATCAGGAGAATTGGGGAAGATGTTTGACATTCCGACTGATGGGACTAAGTCAAGGAAGTCTGGCCCCATAACCGGAGGATCGTCAAGAAGTGGTGCGCAATCAGGTCCAGTGCCTAATGCAACTGGTCGTATGTCTGGCAATTTAGCTTCTGCTGGTTCAAATTCAATGAAGAAAACAAATTCTGGGCCTTTGTCTAAGCATGGGGAGCCTTTAAAGAAATCCTCTGGTCCGCAATCCGGTGGTGTAACAAGGCAAAATTCCGGCCCTATTCCTATACTCCCAACTACAGGTCTCATAACATCTGGGCCAATTACCTCGGGGCCTCTAAATTCATCTGGGGCTCCTAGGAAAATTTCTGGTCCTCTAGACTATTCTGGTTCGATGAAGACACATATGCCTTCAGTTGTCCACAACCAGGCGGTAACTACCCTTGCTCCGGAAGATGACTTTTCCTGCATGAAAAGCTTCCCCAAGCCTGTGCTGTGGCTGGTTATACTTATATTTGTGATGGGGTTCCTCGCTGGAGGCTTCATTCTTGGAGCAGTTCACAATGCAATTCTCCTCATAGTTGTGGCGGTCTTGTTCACAGTTGTTGCTGCACTTTTCATTTGGAATATTTCTTGTGAAAGACGTGGTATCACAGATTTCATCGCTCGTTATCCGGATGCTGATCTTAGAACTGCCAAAAACGGTCAATATGTGAAGGTCACTGGGGTGGTCACCTGTGGTAACGTGCCTCTTGAATCATCCTTCCATAGAGTTCCTAGGTGTGTTTACACGTCTACTTGTCTATATGAGTACCGTGGATGGGGTTCAAAGCCAGCCAATGCTTCACATCGTCGCTTTACATGGGGACTGAGATCAGCAGAGAGGCATGTGGTAGACTTCTACATTTCTGATTTCCAATCTGGGCTCAGGGCATTGGTCAAAACTGGAAACGGTGCAAAGGTAACACCGCTTGTCGATGATTCTGTTGTCATCGATTTTAAGCCAGGAAATGAGCAAGCCTCTCCAGACTTTGTAAGGTGGTTGGGTAAAAAGAATCTAACCAATGATGATCGAATAATGCGGCTTAAAGAAGGGTATATCAAAGAAGGAAGCACAGTAAGTGTGATTGGAGTGGTTCAGAGAAACGATAACGTGTTAATGATAGTCCCGACGACAGAACCATTAGCAGCTGGTTGGCAATGGAGTAAGTGCACATTCCCTGCAAGTCTTGAAGGAATTGTATTGAGATGCGAAGATTCATCGAACGTAGATGCAATTCCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

468

Amino Acids

50.1

Weight (kDa)

9.54

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 228
AccI GTMKAC 2 cut(s) 914, 1014
AccIII TCCGGA 2 cut(s) 568, 793
AciI CCGC 5 cut(s) 362, 551, 707, 1088, 1201
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 2 cut(s) 52, 56
AcsI RAATTY 5 cut(s) 292, 310, 388, 460, 483
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 1 cut(s) 932
AfiI CCNNNNNNNGG 8 cut(s) 113, 170, 203, 368, 419, 547, 568, 940
AflIII ACRYGT 2 cut(s) 909, 1272
AgeI ACCGGT 1 cut(s) 113
AgsI TTSAA 5 cut(s) 291, 297, 875, 948, 1352
AjiI CACGTC 2 cut(s) 764, 912
AjnI CCWGG 2 cut(s) 546, 1123
AleI CACNNNNGTG 1 cut(s) 845
AluBI AGCT 5 cut(s) 28, 93, 278, 597, 1310
AluI AGCT 5 cut(s) 28, 93, 278, 597, 1310
Alw21I GWGCWC 2 cut(s) 95, 1334
Alw26I GTCTC 1 cut(s) 428
Alw44I GTGCAC 1 cut(s) 1330
AlwI GGATC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 448
Aor13HI TCCGGA 2 cut(s) 568, 793
AoxI GGCC 7 cut(s) 52, 56, 193, 317, 394, 437, 452
ApaLI GTGCAC 1 cut(s) 1330
ApeKI GCWGC 2 cut(s) 728, 1307
ApoI RAATTY 5 cut(s) 292, 310, 388, 460, 483
AsiGI ACCGGT 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 596
AspA2I CCTAGG 2 cut(s) 476, 896
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 8 cut(s) 194, 236, 317, 359, 395, 437, 452, 491
AsuHPI GGTGA 3 cut(s) 14, 131, 844
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 3 cut(s) 236, 359, 491
AvrII CCTAGG 2 cut(s) 476, 896
BaeGI GKGCMC 1 cut(s) 1334
BanII GRGCYC 3 cut(s) 95, 475, 1047
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 2 cut(s) 95, 1334
BbvI GCAGC 2 cut(s) 715, 1319
BccI CCATC 3 cut(s) 164, 634, 933
BciT130I CCWGG 2 cut(s) 548, 1125
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 3 cut(s) 477, 497, 897
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 3 cut(s) 729, 1202, 1308
BlnI CCTAGG 2 cut(s) 476, 896
BlpI GCTNAGC 1 cut(s) 29
BlsI GCNGC 3 cut(s) 730, 1203, 1309
Bme1390I CCNGG 2 cut(s) 548, 1125
Bme18I GGWCC 3 cut(s) 236, 359, 491
BmeT110I CYCGRG 1 cut(s) 448
BmgBI CACGTC 2 cut(s) 764, 912
BmgT120I GGNCC 8 cut(s) 194, 236, 317, 359, 395, 437, 452, 491
BmiI GGNNCC 5 cut(s) 196, 339, 453, 474, 647
BmrFI CCNGG 2 cut(s) 548, 1125
BmrI ACTGGG 1 cut(s) 852
BmsI GCATC 4 cut(s) 26, 787, 1358, 1381
BmuI ACTGGG 1 cut(s) 852
BpiI GAAGAC 1 cut(s) 524
BplI GAGNNNNNCTC 2 cut(s) 1124, 1156
BpmI CTGGAG 2 cut(s) 675, 1128
Bpu10I CCTNAGC 1 cut(s) 1046
Bpu1102I GCTNAGC 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 1113
BsaBI GATNNNNATC 2 cut(s) 16, 801
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 4 cut(s) 447, 476, 896, 934
BsaWI WCCGGW 5 cut(s) 113, 203, 368, 568, 793
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bsc4I CCNNNNNNNGG 8 cut(s) 113, 170, 203, 368, 419, 547, 568, 940
Bse118I RCCGGY 2 cut(s) 54, 113
Bse1I ACTGG 4 cut(s) 239, 259, 847, 1069
Bse3DI GCAATG 2 cut(s) 40, 1325
Bse8I GATNNNNATC 2 cut(s) 16, 801
BseAI TCCGGA 2 cut(s) 568, 793
BseBI CCWGG 2 cut(s) 548, 1125
BseCI ATCGAT 1 cut(s) 1113
BseDI CCNNGG 4 cut(s) 447, 476, 896, 934
BseGI GGATG 3 cut(s) 802, 878, 944
BseJI GATNNNNATC 2 cut(s) 16, 801
BseLI CCNNNNNNNGG 8 cut(s) 113, 170, 203, 368, 419, 547, 568, 940
BseMI GCAATG 2 cut(s) 40, 1325
BseMII CTCAG 4 cut(s) 43, 108, 980, 1060
BseNI ACTGG 4 cut(s) 239, 259, 847, 1069
BseRI GAGGAG 1 cut(s) 683
BseSI GKGCMC 1 cut(s) 1334
BseXI GCAGC 2 cut(s) 715, 1319
BsgI GTGCAG 1 cut(s) 714
BshFI GGCC 7 cut(s) 54, 58, 195, 319, 396, 439, 454
BshTI ACCGGT 1 cut(s) 113
BshVI ATCGAT 1 cut(s) 1113
BsiHKAI GWGCWC 2 cut(s) 95, 1334
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 7 cut(s) 55, 114, 204, 369, 393, 569, 794
BslFI GGGAC 3 cut(s) 187, 999, 1271
BslI CCNNNNNNNGG 8 cut(s) 113, 170, 203, 368, 419, 547, 568, 940
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 3 cut(s) 187, 999, 1271
BsnI GGCC 7 cut(s) 54, 58, 195, 319, 396, 439, 454
Bso31I GGTCTC 1 cut(s) 428
BsoBI CYCGRG 1 cut(s) 448
Bsp1286I GDGCHC 4 cut(s) 95, 475, 1047, 1334
Bsp13I TCCGGA 2 cut(s) 568, 793
Bsp143I GATC 4 cut(s) 209, 802, 992, 1189
Bsp1720I GCTNAGC 1 cut(s) 29
BspACI CCGC 5 cut(s) 362, 551, 707, 1088, 1201
BspANI GGCC 7 cut(s) 54, 58, 195, 319, 396, 439, 454
BspCNI CTCAG 4 cut(s) 42, 107, 981, 1059
BspDI ATCGAT 1 cut(s) 1113
BspEI TCCGGA 2 cut(s) 568, 793
BspLI GGNNCC 5 cut(s) 196, 339, 453, 474, 647
BspPI GGATC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 428
BsrDI GCAATG 2 cut(s) 40, 1325
BsrFI RCCGGY 2 cut(s) 54, 113
BsrI ACTGG 4 cut(s) 239, 259, 847, 1069
BssAI RCCGGY 2 cut(s) 54, 113
BssECI CCNNGG 4 cut(s) 447, 476, 896, 934
BssMI GATC 4 cut(s) 209, 802, 992, 1189
BssT1I CCWWGG 2 cut(s) 476, 896
Bst2UI CCWGG 2 cut(s) 548, 1125
Bst4CI ACNGT 5 cut(s) 721, 824, 935, 1073, 1237
BstC8I GCNNGC 3 cut(s) 56, 954, 1137
BstDEI CTNAG 7 cut(s) 29, 94, 177, 327, 806, 989, 1046
BstDSI CCRYGG 1 cut(s) 934
BstEII GGTNACC 1 cut(s) 850
BstF5I GGATG 3 cut(s) 802, 878, 944
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 4 cut(s) 212, 805, 995, 1192
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 4 cut(s) 209, 802, 992, 1189
BstMWI GCNNNNNNNGC 2 cut(s) 337, 594
BstNI CCWGG 2 cut(s) 548, 1125
BstNSI RCATGY 1 cut(s) 1010
BstPI GGTNACC 1 cut(s) 850
BstSCI CCNGG 2 cut(s) 546, 1123
BstSFI CTRYAG 1 cut(s) 417
BstSLI GKGCMC 1 cut(s) 1334
BstV1I GCAGC 2 cut(s) 715, 1319
BstV2I GAAGAC 1 cut(s) 524
Bsu15I ATCGAT 1 cut(s) 1113
BsuRI GGCC 7 cut(s) 54, 58, 195, 319, 396, 439, 454
BsuTUI ATCGAT 1 cut(s) 1113
BtgI CCRYGG 1 cut(s) 934
BtgZI GCGATG 1 cut(s) 766
BtrI CACGTC 2 cut(s) 764, 912
BtsCI GGATG 3 cut(s) 802, 878, 944
BtsIMutI CAGTG 2 cut(s) 246, 840
Cac8I GCNNGC 3 cut(s) 56, 954, 1137
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 2 cut(s) 54, 113
Cfr13I GGNCC 8 cut(s) 194, 236, 317, 359, 395, 437, 452, 491
ClaI ATCGAT 1 cut(s) 1113
Csp6I GTAC 1 cut(s) 931
CspAI ACCGGT 1 cut(s) 113
CviAII CATG 5 cut(s) 103, 332, 589, 981, 1007
CviQI GTAC 1 cut(s) 931
DdeI CTNAG 7 cut(s) 29, 94, 177, 327, 806, 989, 1046
DpnI GATC 4 cut(s) 211, 804, 994, 1191
DpnII GATC 4 cut(s) 209, 802, 992, 1189
DraI TTTAAA 1 cut(s) 345
EaeI YGGCCR 2 cut(s) 52, 56
Ecl136II GAGCTC 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 476, 896
Eco24I GRGCYC 3 cut(s) 95, 475, 1047
Eco31I GGTCTC 1 cut(s) 428
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 3 cut(s) 236, 359, 491
Eco53kI GAGCTC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 448
Eco91I GGTNACC 1 cut(s) 850
EcoICRI GAGCTC 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 850
EcoRII CCWGG 2 cut(s) 546, 1123
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 2 cut(s) 476, 896
EcoT38I GRGCYC 3 cut(s) 95, 475, 1047
ErhI CCWWGG 2 cut(s) 476, 896
FaeI CATG 5 cut(s) 106, 335, 592, 984, 1010
FaqI GGGAC 3 cut(s) 187, 999, 1271
FatI CATG 5 cut(s) 102, 331, 588, 980, 1006
FauNDI CATATG 1 cut(s) 525
FblI GTMKAC 2 cut(s) 914, 1014
Fnu4HI GCNGC 3 cut(s) 729, 1202, 1308
FokI GGATG 3 cut(s) 809, 865, 951
FriOI GRGCYC 3 cut(s) 95, 475, 1047
FseI GGCCGGCC 1 cut(s) 58
Fsp4HI GCNGC 3 cut(s) 729, 1202, 1308
FspBI CTAG 3 cut(s) 477, 497, 897
FspI TGCGCA 1 cut(s) 228
GlaI GCGC 1 cut(s) 228
GluI GCNGC 3 cut(s) 729, 1202, 1308
GsuI CTGGAG 2 cut(s) 675, 1128
HaeIII GGCC 7 cut(s) 54, 58, 195, 319, 396, 439, 454
HapII CCGG 7 cut(s) 55, 114, 204, 369, 393, 569, 794
HhaI GCGC 1 cut(s) 229
Hin1II CATG 5 cut(s) 106, 335, 592, 984, 1010
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HindIII AAGCTT 1 cut(s) 595
HinfI GANTC 4 cut(s) 875, 1100, 1174, 1376
HpaII CCGG 7 cut(s) 55, 114, 204, 369, 393, 569, 794
HphI GGTGA 3 cut(s) 14, 131, 844
Hpy166II GTNNAC 7 cut(s) 541, 679, 717, 907, 915, 1015, 1332
Hpy188I TCNGA 4 cut(s) 165, 1030, 1260, 1406
Hpy8I GTNNAC 7 cut(s) 541, 679, 717, 907, 915, 1015, 1332
Hpy99I CGWCG 2 cut(s) 975, 1294
HpyAV CCTTC 6 cut(s) 540, 829, 892, 1205, 1220, 1346
HpyCH4III ACNGT 5 cut(s) 721, 824, 935, 1073, 1237
HpyCH4IV ACGT 5 cut(s) 763, 864, 911, 1272, 1386
HpyCH4V TGCA 8 cut(s) 251, 588, 686, 731, 1076, 1332, 1343, 1394
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 594
HpyF3I CTNAG 7 cut(s) 29, 94, 177, 327, 806, 989, 1046
HpySE526I ACGT 5 cut(s) 763, 864, 911, 1272, 1386
Hsp92II CATG 5 cut(s) 106, 335, 592, 984, 1010
HspAI GCGC 1 cut(s) 227
Kpn2I TCCGGA 2 cut(s) 568, 793
KroI GCCGGC 1 cut(s) 54
KroNI GCCGGC 1 cut(s) 56
Kzo9I GATC 4 cut(s) 209, 802, 992, 1189
LmnI GCTCC 4 cut(s) 337, 478, 571, 671
Lsp1109I GCAGC 2 cut(s) 715, 1319
LweI GCATC 4 cut(s) 26, 787, 1358, 1381
MaeI CTAG 3 cut(s) 477, 497, 897
MaeII ACGT 5 cut(s) 763, 864, 911, 1272, 1386
MaeIII GTNAC 6 cut(s) 376, 553, 838, 850, 860, 1081
MalI GATC 4 cut(s) 211, 804, 994, 1191
MboI GATC 4 cut(s) 209, 802, 992, 1189
MboII GAAGA 5 cut(s) 160, 313, 529, 584, 1385
MhlI GDGCHC 4 cut(s) 95, 475, 1047, 1334
MmeI TCCRAC 2 cut(s) 107, 188
MroI TCCGGA 2 cut(s) 568, 793
MroNI GCCGGC 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 4 cut(s) 344, 1119, 1206, 1277
MslI CAYNNNNRTG 2 cut(s) 701, 845
MspA1I CMGCKG 1 cut(s) 1310
MspI CCGG 7 cut(s) 55, 114, 204, 369, 393, 569, 794
MspR9I CCNGG 2 cut(s) 548, 1125
MvaI CCWGG 2 cut(s) 548, 1125
MwoI GCNNNNNNNGC 2 cut(s) 337, 594
NaeI GCCGGC 1 cut(s) 56
NdeI CATATG 1 cut(s) 525
NdeII GATC 4 cut(s) 209, 802, 992, 1189
NgoMIV GCCGGC 1 cut(s) 54
NlaIII CATG 5 cut(s) 106, 335, 592, 984, 1010
NlaIV GGNNCC 5 cut(s) 196, 339, 453, 474, 647
NmuCI GTSAC 2 cut(s) 838, 850
NsbI TGCGCA 1 cut(s) 228
NspI RCATGY 1 cut(s) 1010
OliI CACNNNNGTG 1 cut(s) 845
PdiI GCCGGC 1 cut(s) 56
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 4 cut(s) 875, 1100, 1174, 1376
PflFI GACNNNGTC 1 cut(s) 178
PinAI ACCGGT 1 cut(s) 113
PkrI GCNGC 3 cut(s) 730, 1203, 1309
Psp124BI GAGCTC 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 546, 1123
PspEI GGTNACC 1 cut(s) 850
PspGI CCWGG 2 cut(s) 546, 1123
PspN4I GGNNCC 5 cut(s) 196, 339, 453, 474, 647
PspPI GGNCC 8 cut(s) 194, 236, 317, 359, 395, 437, 452, 491
PsyI GACNNNGTC 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 1310
RigI GGCCGGCC 1 cut(s) 58
RsaI GTAC 1 cut(s) 932
RsaNI GTAC 1 cut(s) 931
RseI CAYNNNNRTG 2 cut(s) 701, 845
SacI GAGCTC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 344, 1119, 1206, 1277
SatI GCNGC 3 cut(s) 729, 1202, 1308
Sau3AI GATC 4 cut(s) 209, 802, 992, 1189
Sau96I GGNCC 8 cut(s) 194, 236, 317, 359, 395, 437, 452, 491
ScrFI CCNGG 2 cut(s) 548, 1125
SduI GDGCHC 4 cut(s) 95, 475, 1047, 1334
SfaNI GCATC 4 cut(s) 26, 787, 1358, 1381
SfcI CTRYAG 1 cut(s) 417
SgrAI CRCCGGYG 1 cut(s) 113
SinI GGWCC 3 cut(s) 236, 359, 491
SmiMI CAYNNNNRTG 2 cut(s) 701, 845
SsiI CCGC 5 cut(s) 362, 551, 707, 1088, 1201
SspI AATATT 1 cut(s) 748
SspMI CTAG 3 cut(s) 477, 497, 897
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 546, 1123
StyI CCWWGG 2 cut(s) 476, 896
TaaI ACNGT 5 cut(s) 721, 824, 935, 1073, 1237
TaiI ACGT 5 cut(s) 766, 867, 914, 1275, 1389
TaqI TCGA 6 cut(s) 8, 512, 1095, 1113, 1192, 1382
TauI GCSGC 1 cut(s) 1204
TfiI GAWTC 4 cut(s) 875, 1100, 1174, 1376
Tru1I TTAA 4 cut(s) 344, 1119, 1206, 1277
Tru9I TTAA 4 cut(s) 344, 1119, 1206, 1277
TscAI CASTG 2 cut(s) 246, 847
TseFI GTSAC 2 cut(s) 838, 850
TseI GCWGC 2 cut(s) 728, 1307
Tsp45I GTSAC 2 cut(s) 838, 850
TspDTI ATGAA 8 cut(s) 314, 453, 530, 605, 652, 727, 769, 1368
TspRI CASTG 2 cut(s) 246, 847
Tth111I GACNNNGTC 1 cut(s) 178
VneI GTGCAC 1 cut(s) 1330
VpaK11BI GGWCC 3 cut(s) 236, 359, 491
XapI RAATTY 5 cut(s) 292, 310, 388, 460, 483
XbaI TCTAGA 1 cut(s) 496
XceI RCATGY 1 cut(s) 1010
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XmaJI CCTAGG 2 cut(s) 476, 896
XmiI GTMKAC 2 cut(s) 914, 1014
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 3 cut(s) 477, 497, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.