MD17G1164200.v1.1

membrane protein At1g16860-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
16242828 .. 16248147
5320 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1164200.v1.1.491

Sequence Viewer

Length: 1446 bp
ATGGGTTCCAGATTCCCATCTCATCAGCTCAGCAATGGTCTCTATGTATCAGGTAGGCCTGAGCAGCCAAAAGAAAGGGCCCCTACGATGGGCTCAACTGCTATGCCCTATACTGGTGGTGACATCAAGAAGTCAGGAGAGCTGGGGAAAATGTTTGACATCCCTATGGATGGGTCCAAGTCTAGGAAATCCGGGCAATTGACCAGTGCTCCTTCAAGGACCGGATCATTTGGAGGTGCAGCTTCACATTCAGGTCCTATCATGCCTAATGCTGCAGCTCGGGCAAGCTATACAACATCAGGTCCTGTATCATCTGGAGGCATGACAGGTTCTGTTTCAATAAAGAAGACTAATTCCGGGCCACTCAACAAGCATGGTGAACCATTGAAGAAGTCTTCTGGCCCTCAATCTGGTGGAGTGACACGTCAAAACTCTGGCCATATTCCACCTGTTCTTCCCACAACAGGACTTATCACATCTGGTCCCATTTCTTCAGGTCCTCTAAATTCCTCGGGAGCCCCTAGAAAGGTATCTGGACCTTTAGAGTCTATGGGATCAATGAAATTACAAGGTTCCTCAGTTAACAATCCAGCAGTGACTACTCTTGGCCAAGATGAGTTTTCTTTCAGGAGGAACTTCCCAAAGACAATATTATGGTCTGTGGTACTGATATTTGTGATGGGGTTCATAGCTGGTTGTTTTATTCTTGGAGCAGTCCACAATGCCATACTCCTTGCTGTTGTGGGGATTCTTTTCGCTGGAGTTGCTGCTTTGTTCACATGGAATTCTTGTTGGGGAAGAAACGCTATCGTAAATTTCATTTCTCGGTATCCTGATGCTGAGCTCAGAACTGCAAAGAATGGGCAATACATGAAAGTCTCTGGGGTGGTTACCTGTGGTAACGTTCCCCTTGAGTCATCCTTCCACAGAGTTCCCAGATGTGTTTACACATCTACGAGTTTATATGAGTACCGAGGATGGGGTTCCAAACCAGCAAACCCTACACATCGTCGATTTACATGGGGACTTAGATCATCAGAGAGGCATGTAGCGGACTTCTACATCTCTGATTTCCAGTCTGGTTTGAGAGCGTTAGTTAAGACCGGCTATGGAGCAAGAGTTACTCCTTACGTTGATGAGTCCGTCATTATTGATGTTAACACAGAGAACAAAGACATGTCTCCGGACTTTCTCAGGTGGTTGGCAGAGCGGAATCTTTCAAGTGATGACCGTACAATGCGATTGAAAGAAGGGTACATCAAGGAAGGTAGCACGGTAAGTGTGATGGGAGTTGTCCAGAGAAATGACAATGTGCTTATGATCGTCCCTCCACCTGAGCCATTGACAACTGGATGCCAGTGGAGCAATTGTATTTTTCCAGCTAGCCTTGAGGGGGTGGTTTTGAGATGCGAAGACTCCTCGAAAAACGATGTAATACCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

482

Amino Acids

51.55

Weight (kDa)

9.58

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1210
AccIII TCCGGA 1 cut(s) 1183
AciI CCGC 2 cut(s) 1052, 1210
AclI AACGTT 1 cut(s) 903
AclWI GGATC 2 cut(s) 232, 562
AcoI YGGCCR 2 cut(s) 436, 607
AcsI RAATTY 3 cut(s) 505, 784, 814
AcuI CTGAAG 1 cut(s) 477
AfaI GTAC 4 cut(s) 666, 971, 1234, 1256
AflIII ACRYGT 2 cut(s) 422, 1176
AgsI TTSAA 5 cut(s) 216, 339, 388, 1221, 1246
AjiI CACGTC 1 cut(s) 425
AluBI AGCT 8 cut(s) 28, 142, 242, 278, 288, 692, 844, 1382
AluI AGCT 8 cut(s) 28, 142, 242, 278, 288, 692, 844, 1382
Alw21I GWGCWC 2 cut(s) 211, 846
Alw26I GTCTC 3 cut(s) 44, 883, 1185
AlwI GGATC 2 cut(s) 232, 562
AlwNI CAGNNNCTG 2 cut(s) 305, 332
Ama87I CYCGRG 2 cut(s) 279, 511
Aor13HI TCCGGA 1 cut(s) 1183
AoxI GGCC 6 cut(s) 56, 78, 359, 400, 436, 607
ApaI GGGCCC 1 cut(s) 82
ApeKI GCWGC 5 cut(s) 64, 239, 272, 275, 767
ApoI RAATTY 3 cut(s) 505, 784, 814
AsuC2I CCSGG 2 cut(s) 193, 358
AsuHPI GGTGA 2 cut(s) 131, 389
AsuNHI GCTAGC 1 cut(s) 1382
AvaI CYCGRG 2 cut(s) 279, 511
AvaII GGWCC 7 cut(s) 174, 219, 254, 302, 482, 497, 536
BaeGI GKGCMC 1 cut(s) 82
BalI TGGCCA 2 cut(s) 438, 609
BanII GRGCYC 4 cut(s) 82, 95, 520, 846
BbsI GAAGAC 3 cut(s) 353, 387, 1419
Bbv12I GWGCWC 2 cut(s) 211, 846
BbvI GCAGC 5 cut(s) 76, 251, 259, 287, 754
BccI CCATC 6 cut(s) 25, 82, 164, 673, 972, 1279
BciVI GTATCC 1 cut(s) 840
BcnI CCSGG 2 cut(s) 193, 358
BcoDI GTCTC 3 cut(s) 44, 883, 1185
BfaI CTAG 3 cut(s) 183, 522, 1383
BfmI CTRYAG 1 cut(s) 273
BfuI GTATCC 1 cut(s) 840
BisI GCNGC 5 cut(s) 65, 240, 273, 276, 768
BlpI GCTNAGC 2 cut(s) 29, 840
BlsI GCNGC 5 cut(s) 66, 241, 274, 277, 769
Bme1390I CCNGG 2 cut(s) 193, 358
Bme18I GGWCC 7 cut(s) 174, 219, 254, 302, 482, 497, 536
BmeT110I CYCGRG 2 cut(s) 279, 511
BmgBI CACGTC 1 cut(s) 425
BmiI GGNNCC 8 cut(s) 7, 80, 81, 175, 484, 517, 574, 985
BmrFI CCNGG 2 cut(s) 193, 358
BmsI GCATC 3 cut(s) 826, 1343, 1397
BmtI GCTAGC 1 cut(s) 1386
BpiI GAAGAC 3 cut(s) 353, 387, 1419
BpmI CTGGAG 2 cut(s) 336, 780
Bpu10I CCTNAGC 2 cut(s) 60, 1335
Bpu1102I GCTNAGC 2 cut(s) 29, 840
BpuEI CTTGAG 2 cut(s) 932, 1409
BpuMI CCSGG 2 cut(s) 193, 358
BsaBI GATNNNNATC 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 510, 973
BsaWI WCCGGW 2 cut(s) 221, 1183
BsaXI ACNNNNNCTCC 6 cut(s) 193, 223, 1104, 1134, 1354, 1384
Bse118I RCCGGY 1 cut(s) 1103
Bse1I ACTGG 6 cut(s) 118, 204, 1075, 1354, 1357, 1439
Bse3DI GCAATG 1 cut(s) 40
Bse8I GATNNNNATC 1 cut(s) 16
BseAI TCCGGA 1 cut(s) 1183
BseDI CCNNGG 2 cut(s) 510, 973
BseGI GGATG 5 cut(s) 159, 175, 917, 983, 1358
BseJI GATNNNNATC 1 cut(s) 16
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 7 cut(s) 43, 51, 591, 831, 859, 1207, 1326
BseNI ACTGG 6 cut(s) 118, 204, 1075, 1354, 1357, 1439
BseRI GAGGAG 1 cut(s) 1408
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 5 cut(s) 76, 251, 259, 287, 754
BseYI CCCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 258
BshFI GGCC 6 cut(s) 58, 80, 361, 402, 438, 609
BsiHKAI GWGCWC 2 cut(s) 211, 846
BsiHKCI CYCGRG 2 cut(s) 279, 511
BsiSI CCGG 5 cut(s) 192, 222, 357, 1104, 1184
BslFI GGGAC 3 cut(s) 468, 1038, 1310
BsmAI GTCTC 3 cut(s) 44, 883, 1185
BsmFI GGGAC 3 cut(s) 468, 1038, 1310
BsnI GGCC 6 cut(s) 58, 80, 361, 402, 438, 609
Bso31I GGTCTC 1 cut(s) 44
BsoBI CYCGRG 2 cut(s) 279, 511
Bsp120I GGGCCC 1 cut(s) 78
Bsp1286I GDGCHC 5 cut(s) 82, 95, 211, 520, 846
Bsp13I TCCGGA 1 cut(s) 1183
Bsp143I GATC 4 cut(s) 224, 554, 1031, 1320
Bsp1720I GCTNAGC 2 cut(s) 29, 840
BspACI CCGC 2 cut(s) 1052, 1210
BspANI GGCC 6 cut(s) 58, 80, 361, 402, 438, 609
BspCNI CTCAG 7 cut(s) 42, 52, 590, 832, 858, 1206, 1327
BspEI TCCGGA 1 cut(s) 1183
BspLI GGNNCC 8 cut(s) 7, 80, 81, 175, 484, 517, 574, 985
BspMAI CTGCAG 1 cut(s) 277
BspOI GCTAGC 1 cut(s) 1386
BspPI GGATC 2 cut(s) 232, 562
BspTNI GGTCTC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 1210
BsrDI GCAATG 1 cut(s) 40
BsrFI RCCGGY 1 cut(s) 1103
BsrI ACTGG 6 cut(s) 118, 204, 1075, 1354, 1357, 1439
BssAI RCCGGY 1 cut(s) 1103
BssECI CCNNGG 2 cut(s) 510, 973
BssMI GATC 4 cut(s) 224, 554, 1031, 1320
Bst4CI ACNGT 2 cut(s) 1232, 1276
BstC8I GCNNGC 2 cut(s) 286, 1384
BstDEI CTNAG 8 cut(s) 29, 60, 577, 840, 845, 1028, 1193, 1335
BstEII GGTNACC 1 cut(s) 889
BstF5I GGATG 5 cut(s) 159, 175, 917, 983, 1358
BstKTI GATC 4 cut(s) 227, 557, 1034, 1323
BstMAI GTCTC 3 cut(s) 44, 883, 1185
BstMBI GATC 4 cut(s) 224, 554, 1031, 1320
BstMWI GCNNNNNNNGC 4 cut(s) 64, 281, 764, 1362
BstNSI RCATGY 2 cut(s) 1049, 1180
BstPI GGTNACC 1 cut(s) 889
BstSCI CCNGG 2 cut(s) 191, 356
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 5 cut(s) 76, 251, 259, 287, 754
BstV2I GAAGAC 3 cut(s) 353, 387, 1419
BsuI GTATCC 1 cut(s) 840
BsuRI GGCC 6 cut(s) 58, 80, 361, 402, 438, 609
BtrI CACGTC 1 cut(s) 425
BtsCI GGATG 5 cut(s) 159, 175, 917, 983, 1358
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 3 cut(s) 211, 600, 1364
Cac8I GCNNGC 2 cut(s) 286, 1384
CaiI CAGNNNCTG 2 cut(s) 305, 332
Cfr10I RCCGGY 1 cut(s) 1103
Csp6I GTAC 4 cut(s) 665, 970, 1233, 1255
CviAII CATG 8 cut(s) 262, 322, 374, 780, 871, 1020, 1046, 1177
CviQI GTAC 4 cut(s) 665, 970, 1233, 1255
DdeI CTNAG 8 cut(s) 29, 60, 577, 840, 845, 1028, 1193, 1335
DpnI GATC 4 cut(s) 226, 556, 1033, 1322
DpnII GATC 4 cut(s) 224, 554, 1031, 1320
EaeI YGGCCR 2 cut(s) 436, 607
Ecl136II GAGCTC 1 cut(s) 844
Eco147I AGGCCT 1 cut(s) 58
Eco24I GRGCYC 4 cut(s) 82, 95, 520, 846
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 7 cut(s) 174, 219, 254, 302, 482, 497, 536
Eco53kI GAGCTC 1 cut(s) 844
Eco57I CTGAAG 1 cut(s) 477
Eco88I CYCGRG 2 cut(s) 279, 511
Eco91I GGTNACC 1 cut(s) 889
EcoICRI GAGCTC 1 cut(s) 844
EcoO109I RGGNCCY 5 cut(s) 78, 79, 254, 302, 497
EcoO65I GGTNACC 1 cut(s) 889
EcoRI GAATTC 1 cut(s) 784
EcoT38I GRGCYC 4 cut(s) 82, 95, 520, 846
FaeI CATG 8 cut(s) 265, 325, 377, 783, 874, 1023, 1049, 1180
FaqI GGGAC 3 cut(s) 468, 1038, 1310
FatI CATG 8 cut(s) 261, 321, 373, 779, 870, 1019, 1045, 1176
Fnu4HI GCNGC 5 cut(s) 65, 240, 273, 276, 768
FokI GGATG 5 cut(s) 146, 182, 904, 990, 1365
FriOI GRGCYC 4 cut(s) 82, 95, 520, 846
Fsp4HI GCNGC 5 cut(s) 65, 240, 273, 276, 768
FspBI CTAG 3 cut(s) 183, 522, 1383
GluI GCNGC 5 cut(s) 65, 240, 273, 276, 768
GsaI CCCAGC 1 cut(s) 146
GsuI CTGGAG 2 cut(s) 336, 780
HaeIII GGCC 6 cut(s) 58, 80, 361, 402, 438, 609
HapII CCGG 5 cut(s) 192, 222, 357, 1104, 1184
Hin1II CATG 8 cut(s) 265, 325, 377, 783, 874, 1023, 1049, 1180
HincII GTYRAC 2 cut(s) 583, 1159
HindII GTYRAC 2 cut(s) 583, 1159
HinfI GANTC 7 cut(s) 12, 545, 748, 914, 1139, 1213, 1415
HpaI GTTAAC 2 cut(s) 583, 1159
HpaII CCGG 5 cut(s) 192, 222, 357, 1104, 1184
HphI GGTGA 2 cut(s) 131, 389
Hpy166II GTNNAC 6 cut(s) 380, 583, 718, 777, 946, 1159
Hpy188I TCNGA 3 cut(s) 848, 1039, 1069
Hpy8I GTNNAC 6 cut(s) 380, 583, 718, 777, 946, 1159
Hpy99I CGWCG 1 cut(s) 1014
HpyAV CCTTC 4 cut(s) 222, 931, 1244, 1259
HpyCH4III ACNGT 2 cut(s) 1232, 1276
HpyCH4IV ACGT 3 cut(s) 424, 903, 1131
HpyCH4V TGCA 3 cut(s) 239, 275, 854
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 281, 764, 1362
HpyF3I CTNAG 8 cut(s) 29, 60, 577, 840, 845, 1028, 1193, 1335
HpySE526I ACGT 3 cut(s) 424, 903, 1131
Hsp92II CATG 8 cut(s) 265, 325, 377, 783, 874, 1023, 1049, 1180
Kpn2I TCCGGA 1 cut(s) 1183
KspAI GTTAAC 2 cut(s) 583, 1159
Kzo9I GATC 4 cut(s) 224, 554, 1031, 1320
LmnI GCTCC 5 cut(s) 214, 515, 710, 1112, 1362
Lsp1109I GCAGC 5 cut(s) 76, 251, 259, 287, 754
LweI GCATC 3 cut(s) 826, 1343, 1397
MaeI CTAG 3 cut(s) 183, 522, 1383
MaeII ACGT 3 cut(s) 424, 903, 1131
MaeIII GTNAC 6 cut(s) 119, 418, 595, 889, 899, 1120
MalI GATC 4 cut(s) 226, 556, 1033, 1322
MbiI CCGCTC 1 cut(s) 1210
MboI GATC 4 cut(s) 224, 554, 1031, 1320
MboII GAAGA 7 cut(s) 358, 387, 400, 446, 483, 810, 1424
MfeI CAATTG 2 cut(s) 197, 1366
MhlI GDGCHC 5 cut(s) 82, 95, 211, 520, 846
MlsI TGGCCA 2 cut(s) 438, 609
MluCI AATT 7 cut(s) 197, 352, 505, 563, 784, 814, 1366
MluNI TGGCCA 2 cut(s) 438, 609
MlyI GAGTC 4 cut(s) 554, 923, 1148, 1409
Mox20I TGGCCA 2 cut(s) 438, 609
MroI TCCGGA 1 cut(s) 1183
MscI TGGCCA 2 cut(s) 438, 609
MseI TTAA 3 cut(s) 582, 1098, 1158
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 2 cut(s) 438, 609
MspI CCGG 5 cut(s) 192, 222, 357, 1104, 1184
MspR9I CCNGG 2 cut(s) 193, 358
MunI CAATTG 2 cut(s) 197, 1366
MwoI GCNNNNNNNGC 4 cut(s) 64, 281, 764, 1362
NciI CCSGG 2 cut(s) 193, 358
NdeII GATC 4 cut(s) 224, 554, 1031, 1320
NheI GCTAGC 1 cut(s) 1382
NlaIII CATG 8 cut(s) 265, 325, 377, 783, 874, 1023, 1049, 1180
NlaIV GGNNCC 8 cut(s) 7, 80, 81, 175, 484, 517, 574, 985
NmuCI GTSAC 3 cut(s) 119, 418, 595
NspI RCATGY 2 cut(s) 1049, 1180
PceI AGGCCT 1 cut(s) 58
PciI ACATGT 1 cut(s) 1176
PfeI GAWTC 3 cut(s) 12, 748, 1213
PkrI GCNGC 5 cut(s) 66, 241, 274, 277, 769
PleI GAGTC 4 cut(s) 553, 922, 1147, 1409
PpsI GAGTC 4 cut(s) 553, 922, 1147, 1409
PpuMI RGGWCCY 3 cut(s) 254, 302, 497
PscI ACATGT 1 cut(s) 1176
Psp124BI GAGCTC 1 cut(s) 846
Psp1406I AACGTT 1 cut(s) 903
Psp5II RGGWCCY 3 cut(s) 254, 302, 497
PspEI GGTNACC 1 cut(s) 889
PspFI CCCAGC 1 cut(s) 142
PspN4I GGNNCC 8 cut(s) 7, 80, 81, 175, 484, 517, 574, 985
PspOMI GGGCCC 1 cut(s) 78
PspPPI RGGWCCY 3 cut(s) 254, 302, 497
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 2 cut(s) 305, 332
RsaI GTAC 4 cut(s) 666, 971, 1234, 1256
RsaNI GTAC 4 cut(s) 665, 970, 1233, 1255
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 846
SaqAI TTAA 3 cut(s) 582, 1098, 1158
SatI GCNGC 5 cut(s) 65, 240, 273, 276, 768
Sau3AI GATC 4 cut(s) 224, 554, 1031, 1320
SchI GAGTC 4 cut(s) 554, 923, 1148, 1409
ScrFI CCNGG 2 cut(s) 193, 358
SduI GDGCHC 5 cut(s) 82, 95, 211, 520, 846
SfaNI GCATC 3 cut(s) 826, 1343, 1397
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 7 cut(s) 174, 219, 254, 302, 482, 497, 536
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 911, 1388
SmoI CTYRAG 2 cut(s) 911, 1388
Sse9I AATT 7 cut(s) 197, 352, 505, 563, 784, 814, 1366
SseBI AGGCCT 1 cut(s) 58
SsiI CCGC 2 cut(s) 1052, 1210
SspI AATATT 1 cut(s) 651
SspMI CTAG 3 cut(s) 183, 522, 1383
SstI GAGCTC 1 cut(s) 846
StuI AGGCCT 1 cut(s) 58
StyD4I CCNGG 2 cut(s) 191, 356
TaaI ACNGT 2 cut(s) 1232, 1276
TaiI ACGT 3 cut(s) 427, 906, 1134
TaqI TCGA 2 cut(s) 1012, 1421
TasI AATT 7 cut(s) 197, 352, 505, 563, 784, 814, 1366
TfiI GAWTC 3 cut(s) 12, 748, 1213
Tru1I TTAA 3 cut(s) 582, 1098, 1158
Tru9I TTAA 3 cut(s) 582, 1098, 1158
TscAI CASTG 3 cut(s) 211, 600, 1364
TseFI GTSAC 3 cut(s) 119, 418, 595
TseI GCWGC 5 cut(s) 64, 239, 272, 275, 767
Tsp45I GTSAC 3 cut(s) 119, 418, 595
TspDTI ATGAA 4 cut(s) 575, 676, 808, 887
TspGWI ACGGA 1 cut(s) 1132
TspRI CASTG 3 cut(s) 211, 600, 1364
VpaK11BI GGWCC 7 cut(s) 174, 219, 254, 302, 482, 497, 536
XapI RAATTY 3 cut(s) 505, 784, 814
XceI RCATGY 2 cut(s) 1049, 1180
XspI CTAG 3 cut(s) 183, 522, 1383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.