Rorug02G0414200

membrane protein At1g16860-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001653
Physical Location & Seq
Forward (+)
53018099 .. 53021117
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0414200.1

Sequence Viewer

Length: 1014 bp
ATGGAGGCACTTTTGGGAACTTATGTCATGGGTATTGGTGAAGCAGAGGCATTTTCTGAAAGGTTGAAAAGAGAACTTCTGGCTCTGGAAGCAGCAAATGTGCATGCCATTTTGGAAAGTGAACCTTTGATTGATGAGAAAGATAATGGGTTCCCTTATGCACCGAAGTTATCATCGGCTATGCTTTCGTTATTTATTATCCTTGTCCAATCAGAGCTTGAGCATGAACAACTTTCCACTTTGAAACTTCTGCACCTTCTCTTGAAGTGGAAGTATGGAAACGAAAATGTAGACAGAAGTGGAGGTGCCATGAGCGAGGAGCTTTTGTTCATGTTTCCTGTCGTTGGTCTACTGCCATCTCCTTCTAAACATGTCAAAGGAGCGGCAACAGATCTGCTTGTCATGCTAGAAAGACTTTTAGTAAGAGTTTTGGTAGCTCCAAAGGATAAACCAGCAAAAGAAGCAGGGCATCCCTCTCTAAGCACACCTGGATCTATTGTGTTTAGAATCTTACAGCATCTCTGGTTTCAGGATTCTTCTTCATTGTCCAGTTTGATTTTAAATTTTTCTTCTATCAGTAAAACTAATGGCGAGGAGATTTATGATGTACCAAGATCGTGGGCTTCTCATTTACAAGAGTATACTCTATCGATTGTTGACAAACGAAAGTCCTCCCTACCTCTCTCGCAGACTCAAGAAATATACATAACTGAGATGCCCTCGTTACTCTCTGCCATTGCTGGTCTTTTAGTGATGAATAAGAGGATTGGGCAAGTACTCATGCATTGGATACTTGATTCGGAGCCCAGCTCAAGTCTCGGTTCTCTATTCCTTTTTGCTGATACCAATTTACTTTATGCTGATCTCTACTTGTGCAGAGAGCATAATCTGCCAATATTTGATTGTAATCCCAGCTTGATCAACTTCCAAACAGAGAGGATAAGCACTTTATCTTCCTTCATCAACAGAATCTTCCTTGTAGTTTGTCCGCCAAACAAAGATAGTACGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

37.56

Weight (kDa)

5.42

Isoelectric Point (pI)

49.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3730 PF12530 50 - 108 7.6e-09 Focadhesin/RST1, DUF3730
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 383
AccI GTMKAC 3 cut(s) 291, 349, 641
AciI CCGC 2 cut(s) 383, 989
AclWI GGATC 1 cut(s) 499
AcsI RAATTY 1 cut(s) 562
AfaI GTAC 3 cut(s) 609, 777, 1006
AfiI CCNNNNNNNGG 1 cut(s) 344
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 3 cut(s) 67, 244, 265
AjnI CCWGG 1 cut(s) 487
AloI GAACNNNNNNTCC 2 cut(s) 311, 343
AluBI AGCT 6 cut(s) 217, 322, 437, 810, 915, 1011
AluI AGCT 6 cut(s) 217, 322, 437, 810, 915, 1011
Alw26I GTCTC 1 cut(s) 821
AlwI GGATC 1 cut(s) 499
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 562
AsuHPI GGTGA 1 cut(s) 50
BanI GGYRCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 807
BbvI GCAGC 1 cut(s) 104
BccI CCATC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 489
BciVI GTATCC 1 cut(s) 783
BclI TGATCA 1 cut(s) 918
BcoDI GTCTC 1 cut(s) 821
BfaI CTAG 1 cut(s) 407
BfuI GTATCC 1 cut(s) 783
BglII AGATCT 1 cut(s) 391
BisI GCNGC 2 cut(s) 93, 384
BlsI GCNGC 2 cut(s) 94, 385
BmcAI AGTACT 1 cut(s) 777
Bme1390I CCNGG 1 cut(s) 489
BmiI GGNNCC 3 cut(s) 152, 307, 804
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 3 cut(s) 478, 526, 705
BplI GAGNNNNNCTC 4 cut(s) 704, 736, 794, 826
BpuEI CTTGAG 3 cut(s) 239, 678, 796
Bsa29I ATCGAT 1 cut(s) 650
BsaBI GATNNNNATC 1 cut(s) 906
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 549
Bse3DI GCAATG 1 cut(s) 735
Bse8I GATNNNNATC 1 cut(s) 906
BseBI CCWGG 1 cut(s) 489
BseCI ATCGAT 1 cut(s) 650
BseGI GGATG 1 cut(s) 469
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 2 cut(s) 332, 608
BseXI GCAGC 1 cut(s) 104
BseYI CCCAGC 2 cut(s) 806, 911
BsgI GTGCAG 2 cut(s) 236, 895
BshNI GGYRCC 1 cut(s) 305
BshVI ATCGAT 1 cut(s) 650
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 807
Bsp143I GATC 5 cut(s) 391, 491, 614, 862, 918
BspACI CCGC 2 cut(s) 383, 989
BspCNI CTCAG 1 cut(s) 703
BspDI ATCGAT 1 cut(s) 650
BspLI GGNNCC 3 cut(s) 152, 307, 804
BspPI GGATC 1 cut(s) 499
BspT107I GGYRCC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 735
BsrI ACTGG 1 cut(s) 549
BssMI GATC 5 cut(s) 391, 491, 614, 862, 918
BssNAI GTATAC 1 cut(s) 642
Bst1107I GTATAC 1 cut(s) 642
Bst2UI CCWGG 1 cut(s) 489
BstAPI GCANNNNNTGC 1 cut(s) 889
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 479, 711
BstF5I GGATG 1 cut(s) 469
BstKTI GATC 5 cut(s) 394, 494, 617, 865, 921
BstMAI GTCTC 1 cut(s) 821
BstMBI GATC 5 cut(s) 391, 491, 614, 862, 918
BstMWI GCNNNNNNNGC 4 cut(s) 89, 403, 461, 889
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 2 cut(s) 107, 374
BstSCI CCNGG 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 104
BstX2I RGATCY 2 cut(s) 391, 491
BstXI CCANNNNNNTGG 1 cut(s) 618
BstYI RGATCY 2 cut(s) 391, 491
BstZ17I GTATAC 1 cut(s) 642
Bsu15I ATCGAT 1 cut(s) 650
BsuI GTATCC 1 cut(s) 783
BsuTUI ATCGAT 1 cut(s) 650
BtsCI GGATG 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 105
ClaI ATCGAT 1 cut(s) 650
Csp6I GTAC 3 cut(s) 608, 776, 1005
CviAII CATG 8 cut(s) 28, 104, 224, 310, 331, 371, 403, 781
CviQI GTAC 3 cut(s) 608, 776, 1005
DdeI CTNAG 2 cut(s) 479, 711
DpnI GATC 5 cut(s) 393, 493, 616, 864, 920
DpnII GATC 5 cut(s) 391, 491, 614, 862, 918
DraI TTTAAA 1 cut(s) 561
EciI GGCGGA 1 cut(s) 978
Eco24I GRGCYC 1 cut(s) 807
EcoRII CCWGG 1 cut(s) 487
EcoT22I ATGCAT 1 cut(s) 786
EcoT38I GRGCYC 1 cut(s) 807
FaeI CATG 8 cut(s) 31, 107, 227, 313, 334, 374, 406, 784
FalI AAGNNNNNCTT 2 cut(s) 109, 141
FatI CATG 8 cut(s) 27, 103, 223, 309, 330, 370, 402, 780
FbaI TGATCA 1 cut(s) 918
FblI GTMKAC 3 cut(s) 291, 349, 641
Fnu4HI GCNGC 2 cut(s) 93, 384
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 1 cut(s) 807
Fsp4HI GCNGC 2 cut(s) 93, 384
FspBI CTAG 1 cut(s) 407
GluI GCNGC 2 cut(s) 93, 384
GsaI CCCAGC 2 cut(s) 810, 915
Hin1II CATG 8 cut(s) 31, 107, 227, 313, 334, 374, 406, 784
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 5 cut(s) 507, 533, 691, 797, 969
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 5 cut(s) 122, 292, 350, 642, 658
Hpy188I TCNGA 3 cut(s) 58, 214, 802
Hpy188III TCNNGA 4 cut(s) 86, 262, 530, 695
Hpy8I GTNNAC 5 cut(s) 122, 292, 350, 642, 658
HpyAV CCTTC 3 cut(s) 266, 372, 967
HpyCH4V TGCA 5 cut(s) 103, 161, 253, 784, 876
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 403, 461, 889
HpyF3I CTNAG 2 cut(s) 479, 711
Hsp92II CATG 8 cut(s) 31, 107, 227, 313, 334, 374, 406, 784
Ksp22I TGATCA 1 cut(s) 918
Kzo9I GATC 5 cut(s) 391, 491, 614, 862, 918
LmnI GCTCC 4 cut(s) 319, 380, 442, 802
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 3 cut(s) 478, 526, 705
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 723
MalI GATC 5 cut(s) 393, 493, 616, 864, 920
MbiI CCGCTC 1 cut(s) 383
MboI GATC 5 cut(s) 391, 491, 614, 862, 918
MboII GAAGA 5 cut(s) 528, 531, 561, 945, 964
MflI RGATCY 2 cut(s) 391, 491
MhlI GDGCHC 1 cut(s) 807
MluCI AATT 2 cut(s) 562, 847
MlyI GAGTC 1 cut(s) 685
Mph1103I ATGCAT 1 cut(s) 786
MseI TTAA 1 cut(s) 560
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 4 cut(s) 89, 403, 461, 889
NdeII GATC 5 cut(s) 391, 491, 614, 862, 918
NlaIII CATG 8 cut(s) 31, 107, 227, 313, 334, 374, 406, 784
NlaIV GGNNCC 3 cut(s) 152, 307, 804
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 2 cut(s) 107, 374
PaeI GCATGC 1 cut(s) 107
PciI ACATGT 1 cut(s) 370
PfeI GAWTC 4 cut(s) 507, 533, 797, 969
PkrI GCNGC 2 cut(s) 94, 385
PleI GAGTC 1 cut(s) 685
PpsI GAGTC 1 cut(s) 685
PscI ACATGT 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 487
PspFI CCCAGC 2 cut(s) 806, 911
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 3 cut(s) 152, 307, 804
PsuI RGATCY 2 cut(s) 391, 491
RsaI GTAC 3 cut(s) 609, 777, 1006
RsaNI GTAC 3 cut(s) 608, 776, 1005
SaqAI TTAA 1 cut(s) 560
SatI GCNGC 2 cut(s) 93, 384
Sau3AI GATC 5 cut(s) 391, 491, 614, 862, 918
ScaI AGTACT 1 cut(s) 777
SchI GAGTC 1 cut(s) 685
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 1 cut(s) 807
SfaNI GCATC 3 cut(s) 478, 526, 705
SmlI CTYRAG 3 cut(s) 218, 693, 811
SmoI CTYRAG 3 cut(s) 218, 693, 811
SphI GCATGC 1 cut(s) 107
Sse9I AATT 2 cut(s) 562, 847
SsiI CCGC 2 cut(s) 383, 989
SspI AATATT 1 cut(s) 897
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 487
TaqI TCGA 1 cut(s) 650
TasI AATT 2 cut(s) 562, 847
TatI WGTACW 1 cut(s) 775
TauI GCSGC 1 cut(s) 386
TfiI GAWTC 4 cut(s) 507, 533, 797, 969
Tru1I TTAA 1 cut(s) 560
Tru9I TTAA 1 cut(s) 560
TseI GCWGC 1 cut(s) 92
TspDTI ATGAA 5 cut(s) 240, 319, 531, 770, 949
XapI RAATTY 1 cut(s) 562
XceI RCATGY 2 cut(s) 107, 374
XmiI GTMKAC 3 cut(s) 291, 349, 641
XspI CTAG 1 cut(s) 407
ZrmI AGTACT 1 cut(s) 777
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.