AT2G10950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003259
Physical Location & Seq
Reverse (-)
4314243 .. 4317882
3640 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G10950.2

Sequence Viewer

Length: 1011 bp
ATGTCTTGGCTCTTCAAATCTCGCGGCGATGACGATCACGATCCCGATCCCGATCCTTCCACAACTCATGGCGGTGTCAAAGAAGATTTATCTTCCTTACTCCGTGGCGTCGCAGCTTTCCTGGCACCGCCTCCTTCTCCACCTGTAAACGAACGCCGACTCTCCTCTGATAATTCACCAACTCAGCTAGGTCTTCTCGGGATCCGCAACGATCTAGCCGAGATTCGTGGAAATTTCTCCAATTTCGCATCTAATTTACTCCAATTTCCTAGTAATCTAAGAGATAGAGAAAGTAGTAGAAGATCTCCGTTGAACGATCAAGTTCCTGGAATCTCTGAAGAAGTAGTCGATTTCGCTGTTAAAATCTCGACGAAACCTGGTTGTTGGACAGATTTTCCATTGTCACTCGATACTGAATTTGAACTGTCTGAGGCTCAAAGGGCACATGCATCAGCCATTGAAGATTTGGTTCCTGGCCTTGTAGCTGTGAAGAATCAAGTTAGTAGTTACATGGATGATGAACACTTCTGGCTGATTTATTTTATTTTGCTGATGCCGAGACTGAATGGGCATGATTTTGAACTCTTAGCAACATGCAAGGTATTTGAAACAAGGGATCAACTTTTACTAAAGCTGCAAAAGAAAGAGACAGGGTCAAGCAAGAGCACTACTGGTCACGAAACTCCTGAAGAAGGTAGCAGTAGGGAAACAGAAACCGTTGAGGGAGTCATTGACAAGATAGAGACTCTAAAAATTGAGCAAAGGGAGATAAGTGATGAGTCATCTGAAGAACAACGGAGGAGTTTCAGAGATGAAGAGGTAATCTCCTTTAGTGATTTAGATGTCGATGATCTCTCGGAGAAGCCAAGTCCCAACAGGAGTACACTGAAAAGACCAGCATCAAACGCAAGCGGGTCAAGCTGGGTTCAGCTCAGCAAGAGCCAAGTTGGACATAGCAAGGATTCGGAAGGTGATTCCAGTGACTGGCTTCCAATTGGCGATTCTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

336

Amino Acids

37.33

Weight (kDa)

4.65

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 124
AccB7I CCANNNNNTGG 1 cut(s) 984
AccII CGCG 1 cut(s) 24
AciI CCGC 5 cut(s) 24, 72, 128, 205, 912
AclWI GGATC 6 cut(s) 35, 41, 47, 196, 209, 624
AcsI RAATTY 2 cut(s) 232, 416
AcuI CTGAAG 3 cut(s) 357, 708, 807
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 883
AfiI CCNNNNNNNGG 2 cut(s) 692, 984
AgsI TTSAA 6 cut(s) 16, 313, 422, 461, 581, 608
AjnI CCWGG 4 cut(s) 120, 325, 376, 472
AjuI GAANNNNNNNTTGG 1 cut(s) 985
AluBI AGCT 6 cut(s) 116, 187, 485, 634, 921, 931
AluI AGCT 6 cut(s) 116, 187, 485, 634, 921, 931
Alw21I GWGCWC 1 cut(s) 668
Alw26I GTCTC 3 cut(s) 553, 641, 737
AlwI GGATC 6 cut(s) 35, 41, 47, 196, 209, 624
AlwNI CAGNNNCTG 1 cut(s) 984
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 475
ApeKI GCWGC 2 cut(s) 113, 634
ApoI RAATTY 2 cut(s) 232, 416
AsuHPI GGTGA 2 cut(s) 168, 983
AvaI CYCGRG 1 cut(s) 197
BaeGI GKGCMC 1 cut(s) 445
BamHI GGATCC 1 cut(s) 201
BanI GGYRCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 668
BbvI GCAGC 2 cut(s) 125, 621
BciT130I CCWGG 4 cut(s) 122, 327, 378, 474
BcoDI GTCTC 3 cut(s) 553, 641, 737
BfaI CTAG 3 cut(s) 188, 215, 270
BglII AGATCT 1 cut(s) 302
BisI GCNGC 3 cut(s) 25, 114, 635
BlpI GCTNAGC 1 cut(s) 932
BlsI GCNGC 3 cut(s) 26, 115, 636
Bme1390I CCNGG 4 cut(s) 122, 327, 378, 474
BmeT110I CYCGRG 1 cut(s) 197
BmiI GGNNCC 3 cut(s) 126, 203, 471
BmrFI CCNGG 4 cut(s) 122, 327, 378, 474
BmsI GCATC 4 cut(s) 257, 458, 543, 908
BpiI GAAGAC 1 cut(s) 185
BplI GAGNNNNNCTC 2 cut(s) 809, 841
Bpu1102I GCTNAGC 1 cut(s) 932
BsaBI GATNNNNATC 4 cut(s) 33, 39, 45, 51
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 2 cut(s) 692, 984
Bse1I ACTGG 3 cut(s) 676, 978, 989
Bse8I GATNNNNATC 4 cut(s) 33, 39, 45, 51
BseBI CCWGG 4 cut(s) 122, 327, 378, 474
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 520
BseJI GATNNNNATC 4 cut(s) 33, 39, 45, 51
BseLI CCNNNNNNNGG 2 cut(s) 692, 984
BseMII CTCAG 3 cut(s) 197, 420, 946
BseNI ACTGG 3 cut(s) 676, 978, 989
BseRI GAGGAG 2 cut(s) 154, 814
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 2 cut(s) 125, 621
BseYI CCCAGC 1 cut(s) 921
Bsh1236I CGCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 477
BshNI GGYRCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 668
BsiHKCI CYCGRG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 855
BslI CCNNNNNNNGG 2 cut(s) 692, 984
BsmAI GTCTC 3 cut(s) 553, 641, 737
BsmFI GGGAC 1 cut(s) 855
BsnI GGCC 1 cut(s) 477
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 445, 668
Bsp1720I GCTNAGC 1 cut(s) 932
BspACI CCGC 5 cut(s) 24, 72, 128, 205, 912
BspANI GGCC 1 cut(s) 477
BspCNI CTCAG 3 cut(s) 196, 421, 945
BspFNI CGCG 1 cut(s) 24
BspLI GGNNCC 3 cut(s) 126, 203, 471
BspPI GGATC 6 cut(s) 35, 41, 47, 196, 209, 624
BspQI GCTCTTC 1 cut(s) 17
BspT107I GGYRCC 1 cut(s) 124
BsrI ACTGG 3 cut(s) 676, 978, 989
BssECI CCNNGG 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 4 cut(s) 122, 327, 378, 474
Bst4CI ACNGT 2 cut(s) 426, 718
Bst6I CTCTTC 2 cut(s) 17, 810
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 910
BstDEI CTNAG 5 cut(s) 183, 278, 429, 586, 932
BstDSI CCRYGG 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 690
BstF5I GGATG 1 cut(s) 520
BstFNI CGCG 1 cut(s) 24
BstMAI GTCTC 3 cut(s) 553, 641, 737
BstMWI GCNNNNNNNGC 4 cut(s) 122, 440, 905, 918
BstNI CCWGG 4 cut(s) 122, 327, 378, 474
BstNSI RCATGY 2 cut(s) 449, 597
BstSCI CCNGG 4 cut(s) 120, 325, 376, 472
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 125, 621
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 2 cut(s) 201, 302
BstYI RGATCY 2 cut(s) 201, 302
BsuRI GGCC 1 cut(s) 477
BtgI CCRYGG 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 884, 985
Cac8I GCNNGC 1 cut(s) 910
CaiI CAGNNNCTG 1 cut(s) 984
CseI GACGC 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 376
Csp6I GTAC 1 cut(s) 882
CviAII CATG 5 cut(s) 68, 446, 511, 572, 594
CviQI GTAC 1 cut(s) 882
DdeI CTNAG 5 cut(s) 183, 278, 429, 586, 932
Eam1104I CTCTTC 2 cut(s) 17, 810
EarI CTCTTC 2 cut(s) 17, 810
Eco57I CTGAAG 3 cut(s) 357, 708, 807
Eco88I CYCGRG 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoRII CCWGG 4 cut(s) 120, 325, 376, 472
EcoT22I ATGCAT 1 cut(s) 451
FaeI CATG 5 cut(s) 71, 449, 514, 575, 597
FaiI YATR 6 cut(s) 69, 447, 512, 573, 595, 954
FaqI GGGAC 1 cut(s) 855
FatI CATG 5 cut(s) 67, 445, 510, 571, 593
FauI CCCGC 1 cut(s) 905
Fnu4HI GCNGC 3 cut(s) 25, 114, 635
FokI GGATG 1 cut(s) 527
Fsp4HI GCNGC 3 cut(s) 25, 114, 635
FspBI CTAG 3 cut(s) 188, 215, 270
GluI GCNGC 3 cut(s) 25, 114, 635
GsaI CCCAGC 1 cut(s) 925
HaeIII GGCC 1 cut(s) 477
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 5 cut(s) 71, 449, 514, 575, 597
HphI GGTGA 2 cut(s) 168, 983
Hpy166II GTNNAC 2 cut(s) 148, 884
Hpy188I TCNGA 8 cut(s) 169, 337, 430, 787, 809, 859, 967, 1006
Hpy188III TCNNGA 7 cut(s) 38, 44, 50, 199, 367, 677, 686
Hpy8I GTNNAC 2 cut(s) 148, 884
Hpy99I CGWCG 2 cut(s) 113, 373
HpyAV CCTTC 4 cut(s) 66, 144, 686, 962
HpyCH4III ACNGT 2 cut(s) 426, 718
HpyCH4V TGCA 3 cut(s) 449, 597, 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 440, 905, 918
HpyF3I CTNAG 5 cut(s) 183, 278, 429, 586, 932
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 5 cut(s) 71, 449, 514, 575, 597
LguI GCTCTTC 1 cut(s) 17
Lsp1109I GCAGC 2 cut(s) 125, 621
LweI GCATC 4 cut(s) 257, 458, 543, 908
MabI ACCWGGT 1 cut(s) 376
MaeI CTAG 3 cut(s) 188, 215, 270
MaeIII GTNAC 4 cut(s) 402, 506, 674, 980
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 2 cut(s) 201, 302
MhlI GDGCHC 2 cut(s) 445, 668
MluCI AATT 8 cut(s) 172, 232, 241, 253, 263, 416, 753, 993
MlyI GAGTC 4 cut(s) 153, 735, 739, 788
MmeI TCCRAC 2 cut(s) 365, 928
MnlI CCTC 6 cut(s) 141, 175, 424, 715, 792, 811
Mph1103I ATGCAT 1 cut(s) 451
MseI TTAA 2 cut(s) 360, 1009
MslI CAYNNNNRTG 1 cut(s) 72
MspR9I CCNGG 4 cut(s) 122, 327, 378, 474
MunI CAATTG 1 cut(s) 993
MvaI CCWGG 4 cut(s) 122, 327, 378, 474
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 4 cut(s) 122, 440, 905, 918
NlaIII CATG 5 cut(s) 71, 449, 514, 575, 597
NlaIV GGNNCC 3 cut(s) 126, 203, 471
NmeAIII GCCGAG 2 cut(s) 244, 582
NmuCI GTSAC 3 cut(s) 402, 674, 980
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 2 cut(s) 449, 597
PciSI GCTCTTC 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 6 cut(s) 223, 330, 493, 962, 974, 1001
PflFI GACNNNGTC 1 cut(s) 652
PflMI CCANNNNNTGG 1 cut(s) 984
PfoI TCCNGGA 1 cut(s) 325
PkrI GCNGC 3 cut(s) 26, 115, 636
PleI GAGTC 4 cut(s) 153, 734, 739, 787
PpsI GAGTC 4 cut(s) 153, 734, 739, 787
Psp6I CCWGG 4 cut(s) 120, 325, 376, 472
PspFI CCCAGC 1 cut(s) 921
PspGI CCWGG 4 cut(s) 120, 325, 376, 472
PspN4I GGNNCC 3 cut(s) 126, 203, 471
PstNI CAGNNNCTG 1 cut(s) 984
PsuI RGATCY 2 cut(s) 201, 302
PsyI GACNNNGTC 1 cut(s) 652
RsaI GTAC 1 cut(s) 883
RsaNI GTAC 1 cut(s) 882
RseI CAYNNNNRTG 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 360, 1009
SatI GCNGC 3 cut(s) 25, 114, 635
SchI GAGTC 4 cut(s) 153, 735, 739, 788
ScrFI CCNGG 4 cut(s) 122, 327, 378, 474
SduI GDGCHC 2 cut(s) 445, 668
SexAI ACCWGGT 1 cut(s) 376
SfaNI GCATC 4 cut(s) 257, 458, 543, 908
SmiMI CAYNNNNRTG 1 cut(s) 72
Sse9I AATT 8 cut(s) 172, 232, 241, 253, 263, 416, 753, 993
SsiI CCGC 5 cut(s) 24, 72, 128, 205, 912
SspMI CTAG 3 cut(s) 188, 215, 270
StyD4I CCNGG 4 cut(s) 120, 325, 376, 472
TaaI ACNGT 2 cut(s) 426, 718
TaqI TCGA 4 cut(s) 348, 368, 408, 846
TasI AATT 8 cut(s) 172, 232, 241, 253, 263, 416, 753, 993
TatI WGTACW 1 cut(s) 881
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 6 cut(s) 223, 330, 493, 962, 974, 1001
Tru1I TTAA 2 cut(s) 360, 1009
Tru9I TTAA 2 cut(s) 360, 1009
TscAI CASTG 2 cut(s) 891, 985
TseFI GTSAC 3 cut(s) 402, 674, 980
TseI GCWGC 2 cut(s) 113, 634
Tsp45I GTSAC 3 cut(s) 402, 674, 980
TspDTI ATGAA 2 cut(s) 534, 828
TspGWI ACGGA 3 cut(s) 92, 297, 811
TspRI CASTG 2 cut(s) 891, 985
Tth111I GACNNNGTC 1 cut(s) 652
Van91I CCANNNNNTGG 1 cut(s) 984
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 2 cut(s) 232, 416
XceI RCATGY 2 cut(s) 449, 597
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XspI CTAG 3 cut(s) 188, 215, 270
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.