Rh2AG030400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003259
Physical Location & Seq
Forward (+)
2101986 .. 2103108
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG030400.1

Sequence Viewer

Length: 615 bp
ATGAGTGAGGAGCAATTTTGGATGATCTATTTCTTGTTACTGCTTCCAAGACTAAATGCAGATGATTTTGAGCTTCTGTCAACCCCCAAGATTGTTGAAGCAAGAAATGTACTTCTGCACAAGCTTCAAAAGAACACGCAGGTATCCACCTCTGAGGAGTCAACTCTTCATTCAACTGAAAAGGACACCCAGGTTGAGAAGACACAAGGGGGAGAATTCTCCTCTGCAGAAAAGAAAGATCTGACAGAGATTGTAAATACAGCTGACAGGTTAAGAATTGACGATGAAGAGAGCACTGAGCAATGGTCCGAAGCAGCGAGCATTAGTTCTGGTACTTTTGTGGATGACCCAAAAAAACTTGAACATGATGACGATATCTCATTCAGCGATTTAGAGGATGACGAGAATGACATTTCTACTAGATCGTCAGGCCTAAGGCCAGTAAAGGACGTTAGGGAATGTTCACCCAGTGGATCAAATCATTCAAATGACTGGATTCGGCTGAATAGAAGTGCTGCGATTGATGGTGGCCATCAAAGGACTGGTACATCGAAAGAGAAAGATTCAGAAGGTGAGGAGTCGAATGACTGGCTCACTGTAGATAAGTTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

204

Amino Acids

23.07

Weight (kDa)

4.47

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 1 cut(s) 215
AdeI CACNNNGTG 1 cut(s) 470
AfaI GTAC 3 cut(s) 111, 334, 547
AgsI TTSAA 5 cut(s) 98, 128, 174, 362, 486
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 3 cut(s) 73, 124, 263
AluI AGCT 3 cut(s) 73, 124, 263
Alw21I GWGCWC 1 cut(s) 296
AlwI GGATC 1 cut(s) 481
AoxI GGCC 3 cut(s) 430, 437, 529
ApeKI GCWGC 2 cut(s) 314, 515
ApoI RAATTY 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 456, 584
AvaII GGWCC 1 cut(s) 306
AxyI CCTNAGG 1 cut(s) 434
BaeI ACNNNNGTAYC 4 cut(s) 126, 159, 324, 357
BalI TGGCCA 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 326, 502
BccI CCATC 2 cut(s) 518, 540
BciT130I CCWGG 1 cut(s) 191
BciVI GTATCC 1 cut(s) 154
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 2 cut(s) 225, 597
BfuAI ACCTGC 1 cut(s) 130
BfuI GTATCC 1 cut(s) 154
BglII AGATCT 1 cut(s) 238
BisI GCNGC 2 cut(s) 315, 516
BlsI GCNGC 2 cut(s) 316, 517
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 462
BmuI ACTGGG 1 cut(s) 462
BpiI GAAGAC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 189
Bse1I ACTGG 5 cut(s) 440, 468, 497, 547, 593
Bse21I CCTNAGG 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 308
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 3 cut(s) 27, 349, 403
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 2 cut(s) 144, 288
BseNI ACTGG 5 cut(s) 440, 468, 497, 547, 593
BseRI GAGGAG 4 cut(s) 23, 170, 211, 590
BseXI GCAGC 2 cut(s) 326, 502
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 3 cut(s) 432, 439, 531
BsiHKAI GWGCWC 1 cut(s) 296
BsnI GGCC 3 cut(s) 432, 439, 531
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 4 cut(s) 24, 238, 422, 473
BspANI GGCC 3 cut(s) 432, 439, 531
BspCNI CTCAG 2 cut(s) 145, 289
BspMAI CTGCAG 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 481
BsrDI GCAATG 1 cut(s) 308
BsrI ACTGG 5 cut(s) 440, 468, 497, 547, 593
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 4 cut(s) 24, 238, 422, 473
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 598
Bst6I CTCTTC 2 cut(s) 171, 282
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 153, 297, 434
BstF5I GGATG 3 cut(s) 27, 349, 403
BstKTI GATC 4 cut(s) 27, 241, 425, 476
BstMBI GATC 4 cut(s) 24, 238, 422, 473
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstSFI CTRYAG 2 cut(s) 225, 597
BstV1I GCAGC 2 cut(s) 326, 502
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 434
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 432, 439, 531
BtsCI GGATG 3 cut(s) 27, 349, 403
BtsIMutI CAGTG 3 cut(s) 294, 475, 594
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 306
Csp6I GTAC 3 cut(s) 110, 333, 546
CviAII CATG 1 cut(s) 365
CviJI RGCY 8 cut(s) 73, 124, 263, 432, 439, 502, 531, 592
CviKI_1 RGCY 8 cut(s) 73, 124, 263, 432, 439, 502, 531, 592
CviQI GTAC 3 cut(s) 110, 333, 546
DdeI CTNAG 3 cut(s) 153, 297, 434
DpnI GATC 4 cut(s) 26, 240, 424, 475
DpnII GATC 4 cut(s) 24, 238, 422, 473
DraIII CACNNNGTG 1 cut(s) 470
EaeI YGGCCR 1 cut(s) 529
Eam1104I CTCTTC 2 cut(s) 171, 282
EarI CTCTTC 2 cut(s) 171, 282
Eco147I AGGCCT 1 cut(s) 432
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 306
Eco81I CCTNAGG 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 189
EcoRV GATATC 1 cut(s) 376
FaeI CATG 1 cut(s) 368
FaiI YATR 1 cut(s) 366
FatI CATG 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 315, 516
FokI GGATG 3 cut(s) 34, 356, 410
Fsp4HI GCNGC 2 cut(s) 315, 516
FspBI CTAG 1 cut(s) 420
GluI GCNGC 2 cut(s) 315, 516
HaeIII GGCC 3 cut(s) 432, 439, 531
Hin1II CATG 1 cut(s) 368
HincII GTYRAC 2 cut(s) 81, 162
HindII GTYRAC 2 cut(s) 81, 162
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 4 cut(s) 158, 496, 563, 578
HphI GGTGA 2 cut(s) 456, 584
Hpy166II GTNNAC 3 cut(s) 81, 162, 464
Hpy188I TCNGA 4 cut(s) 154, 243, 310, 568
Hpy8I GTNNAC 3 cut(s) 81, 162, 464
HpyAV CCTTC 1 cut(s) 563
HpyCH4III ACNGT 1 cut(s) 598
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 59, 118, 227
HpyF3I CTNAG 3 cut(s) 153, 297, 434
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 1 cut(s) 368
Kzo9I GATC 4 cut(s) 24, 238, 422, 473
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 326, 502
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 1 cut(s) 36
MalI GATC 4 cut(s) 26, 240, 424, 475
MboI GATC 4 cut(s) 24, 238, 422, 473
MboII GAAGA 3 cut(s) 158, 211, 299
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 296
MlsI TGGCCA 1 cut(s) 531
MluCI AATT 3 cut(s) 14, 215, 276
MluNI TGGCCA 1 cut(s) 531
MlyI GAGTC 2 cut(s) 167, 587
MnlI CCTC 5 cut(s) 148, 160, 232, 388, 568
Mox20I TGGCCA 1 cut(s) 531
MscI TGGCCA 1 cut(s) 531
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
NdeII GATC 4 cut(s) 24, 238, 422, 473
NlaIII CATG 1 cut(s) 368
PceI AGGCCT 1 cut(s) 432
PfeI GAWTC 2 cut(s) 496, 563
PkrI GCNGC 2 cut(s) 316, 517
PleI GAGTC 2 cut(s) 166, 586
PpsI GAGTC 2 cut(s) 166, 586
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspPI GGNCC 1 cut(s) 306
PstI CTGCAG 1 cut(s) 229
PsuI RGATCY 1 cut(s) 238
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 3 cut(s) 111, 334, 547
RsaNI GTAC 3 cut(s) 110, 333, 546
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 1 cut(s) 272
SatI GCNGC 2 cut(s) 315, 516
Sau3AI GATC 4 cut(s) 24, 238, 422, 473
Sau96I GGNCC 1 cut(s) 306
SchI GAGTC 2 cut(s) 167, 587
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 296
SetI ASST 9 cut(s) 75, 126, 144, 152, 195, 265, 272, 453, 574
SfcI CTRYAG 2 cut(s) 225, 597
SinI GGWCC 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 486
Sse9I AATT 3 cut(s) 14, 215, 276
SseBI AGGCCT 1 cut(s) 432
SspMI CTAG 1 cut(s) 420
StuI AGGCCT 1 cut(s) 432
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 598
TaiI ACGT 1 cut(s) 453
TaqI TCGA 2 cut(s) 551, 581
TasI AATT 3 cut(s) 14, 215, 276
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 2 cut(s) 496, 563
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TscAI CASTG 3 cut(s) 301, 475, 601
TseI GCWGC 2 cut(s) 314, 515
TspDTI ATGAA 2 cut(s) 158, 300
TspRI CASTG 3 cut(s) 301, 475, 601
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.