Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003259

Physical Location & Seq

Genomic Coordinates Forward (+)

78003493 .. 78006652

Gene Structure 3160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG455300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGATATGCTCACTTGTCATCTGTCCTTACTTGTGGCCTCGCTGGACGTTCCACCGTCGTCATCCCCCCTTCCCTCCTCCGATTCTCAACCTTCACCGTCGCCGGCGCTCTTGGGAGTTCAAAACAATCTTGCGGAATTGGGTAGGAGCTTCAAGACAGGCCTCTCGTTTCTCTCCATCGCCGAAATCTCCAAATTGGCTTCGAACTTGATGCCAGTTCGGAATAGAGCTTCGGAAGAAGACGGTGGCGGTTCCGTGCCAAGAATTACCAATGAAATTCTCGACTTCGTCGCTCAGATTTTGAAGCTTTCGGACTATTGGACCCGCTTTCCTATACCACTGGACCACCATGAGCTAGTATCTCATTACCTAAGCAAAATAAAGTTCAAAGGGAAAATCATGGAGAAGCAGGATCTCAAAATGGAACCAGTAGCAAGCACATACTCCAGAGAGAGGGGAAAGAGTATTACCATCAATTGTGCTGCCGGACCTTTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

166

Amino Acids

18.18

Weight (kDa)

6.96

Isoelectric Point (pI)

56.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10950 AT2G10950 AT2G10950
fragaria_vesca	FvH4_1g02550
malus_domestica	MD02G1023000.v1.1 MD15G1165700.v1.1
prunus_persica	Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1
pyrus_communis	pycom02g01980 pycom02g01990 pycom15g14850
rosa_chinensis	RchiOBHm_Chr2g0087581
rosa_laevigata	RLG00000014236 RLG00000015880
rosa_multiflora	Rmu_sc0000129.1_g000013 Rmu_sc0000146.1_g000024 Rmu_sc0001000.1_g000015 Rmu_sc0002299.1_g000025 Rmu_sc0007639.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153450 Rroxscaffold_6G00397290
rosa_rugosa	Rorug01G0476700
rosa_samantha	Rh2AG030300 Rh2AG030400 Rh2BG030100 Rh2CG030400 Rh2DG030300 Rh4CG011200 Rh4CG011800 Rh4CG012200 Rh4CG012600 Rh4DG394600 Rh5AG455300
rosa_wichuraiana	Rw2G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	134, 249, 325
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	453
AgsI	TTSAA	4 cut(s)	122, 154, 304, 388
AluBI	AGCT	4 cut(s)	150, 230, 307, 355
AluI	AGCT	4 cut(s)	150, 230, 307, 355
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	2 cut(s)	36, 160
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	1 cut(s)	276
AspLEI	GCGC	1 cut(s)	109
AspS9I	GGNCC	3 cut(s)	321, 343, 488
AsuHPI	GGTGA	1 cut(s)	87
AsuII	TTCGAA	1 cut(s)	203
AvaII	GGWCC	3 cut(s)	321, 343, 488
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	2 cut(s)	185, 479
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BfaI	CTAG	2 cut(s)	356, 499
BfoI	RGCGCY	1 cut(s)	110
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
Bme18I	GGWCC	3 cut(s)	321, 343, 488
BmgT120I	GGNCC	3 cut(s)	321, 343, 488
BmiI	GGNNCC	3 cut(s)	253, 323, 426
BmsI	GCATC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	430
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	1 cut(s)	453
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	3 cut(s)	215, 345, 428
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	3 cut(s)	215, 345, 428
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	469
BshFI	GGCC	2 cut(s)	38, 162
BsiSI	CCGG	2 cut(s)	104, 486
BslI	CCNNNNNNNGG	1 cut(s)	453
BsnI	GGCC	2 cut(s)	38, 162
Bsp119I	TTCGAA	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	412
BspACI	CCGC	3 cut(s)	134, 249, 325
BspANI	GGCC	2 cut(s)	38, 162
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	253, 323, 426
BspPI	GGATC	1 cut(s)	420
BspT104I	TTCGAA	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	215, 345, 428
BssAI	RCCGGY	1 cut(s)	103
BssMI	GATC	1 cut(s)	412
Bst4CI	ACNGT	3 cut(s)	57, 99, 245
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	105, 436
BstDEI	CTNAG	2 cut(s)	294, 371
BstF5I	GGATG	1 cut(s)	62
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	1 cut(s)	415
BstMBI	GATC	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	469
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuRI	GGCC	2 cut(s)	38, 162
BtgZI	GCGATG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	2 cut(s)	105, 436
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	3 cut(s)	321, 343, 488
CviAII	CATG	2 cut(s)	350, 400
CviJI	RGCY	7 cut(s)	38, 150, 162, 200, 230, 307, 355
CviKI_1	RGCY	7 cut(s)	38, 150, 162, 200, 230, 307, 355
DdeI	CTNAG	2 cut(s)	294, 371
DpnI	GATC	1 cut(s)	414
DpnII	GATC	1 cut(s)	412
Eco147I	AGGCCT	1 cut(s)	162
Eco47I	GGWCC	3 cut(s)	321, 343, 488
FaeI	CATG	2 cut(s)	353, 403
FaiI	YATR	5 cut(s)	8, 335, 351, 401, 442
FatI	CATG	2 cut(s)	349, 399
FauI	CCCGC	1 cut(s)	332
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	483
FspBI	CTAG	2 cut(s)	356, 499
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	430
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	38, 162
HapII	CCGG	2 cut(s)	104, 486
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	353, 403
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	2 cut(s)	104, 486
HphI	GGTGA	1 cut(s)	87
Hpy188I	TCNGA	5 cut(s)	82, 222, 235, 297, 313
Hpy188III	TCNNGA	3 cut(s)	154, 281, 447
Hpy99I	CGWCG	3 cut(s)	61, 103, 293
HpyAV	CCTTC	2 cut(s)	80, 102
HpyCH4III	ACNGT	3 cut(s)	57, 99, 245
HpyCH4IV	ACGT	1 cut(s)	48
HpyF3I	CTNAG	2 cut(s)	294, 371
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	353, 403
HspAI	GCGC	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	412
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	8 cut(s)	29, 117, 144, 228, 326, 395, 441, 460
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	2 cut(s)	356, 499
MaeII	ACGT	1 cut(s)	48
MalI	GATC	1 cut(s)	414
MboI	GATC	1 cut(s)	412
MboII	GAAGA	2 cut(s)	248, 251
MfeI	CAATTG	1 cut(s)	475
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	5 cut(s)	137, 194, 264, 276, 475
MnlI	CCTC	5 cut(s)	49, 85, 88, 173, 447
MreI	CGCCGGCG	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	103
MspI	CCGG	2 cut(s)	104, 486
MunI	CAATTG	1 cut(s)	475
NaeI	GCCGGC	1 cut(s)	105
NdeII	GATC	1 cut(s)	412
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	353, 403
NlaIV	GGNNCC	3 cut(s)	253, 323, 426
NspV	TTCGAA	1 cut(s)	203
PceI	AGGCCT	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	83
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	484
PspN4I	GGNNCC	3 cut(s)	253, 323, 426
PspPI	GGNCC	3 cut(s)	321, 343, 488
PsuI	RGATCY	1 cut(s)	412
PsyI	GACNNNGTC	1 cut(s)	287
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	1 cut(s)	412
Sau96I	GGNCC	3 cut(s)	321, 343, 488
SetI	ASST	8 cut(s)	51, 94, 152, 232, 309, 357, 372, 493
SfaNI	GCATC	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	203
SgrAI	CRCCGGYG	1 cut(s)	103
SinI	GGWCC	3 cut(s)	321, 343, 488
Sse9I	AATT	5 cut(s)	137, 194, 264, 276, 475
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	3 cut(s)	134, 249, 325
SspMI	CTAG	2 cut(s)	356, 499
StuI	AGGCCT	1 cut(s)	162
TaaI	ACNGT	3 cut(s)	57, 99, 245
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	203, 282
TasI	AATT	5 cut(s)	137, 194, 264, 276, 475
TfiI	GAWTC	1 cut(s)	83
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	1 cut(s)	482
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	345
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	3 cut(s)	321, 343, 488
XapI	RAATTY	1 cut(s)	276
XspI	CTAG	2 cut(s)	356, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.