Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003259

Physical Location & Seq

Genomic Coordinates Forward (+)

49704249 .. 49705659

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014236

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCTGGTTTGGAACGAAGCATCGGAAGACTACGACGGCGATTCCATGCCAAGAATTATCGATGAGATTCTCGGCTTCGTCGCTCCTATTTTGAAGCTTCCAAACTGTTGGACCAGCTTTCCTATACCACTCGACCACCATGAAGTCAGAATGGAAGCTGAGCAGAGGAACCTGAAGCAGAAGCACTGTTGCATGTGGAAGTGCTTGGTTGAGGAGCCATTGTGCTCGAGGCCTGCGACGGTTATGAAGGTGTTGACGCTTTTGGCTGGTAGGAGGCGGCTCCAGTGGCGGATTAGATCTTGTCTGGTGAGGGAGCGGATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BSD

Protein Analysis

109

Amino Acids

12.73

Weight (kDa)

8.28

Isoelectric Point (pI)

71.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G10950 AT2G10950 AT2G10950
fragaria_vesca	FvH4_1g02550
malus_domestica	MD02G1023000.v1.1 MD15G1165700.v1.1
prunus_persica	Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1 Prupe.7G249100_v2.0.a1
pyrus_communis	pycom02g01980 pycom02g01990 pycom15g14850
rosa_chinensis	RchiOBHm_Chr2g0087581
rosa_laevigata	RLG00000014236 RLG00000015880
rosa_multiflora	Rmu_sc0000129.1_g000013 Rmu_sc0000146.1_g000024 Rmu_sc0001000.1_g000015 Rmu_sc0002299.1_g000025 Rmu_sc0007639.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153450 Rroxscaffold_6G00397290
rosa_rugosa	Rorug01G0476700
rosa_samantha	Rh2AG030300 Rh2AG030400 Rh2BG030100 Rh2CG030400 Rh2DG030300 Rh4CG011200 Rh4CG011800 Rh4CG012200 Rh4CG012600 Rh4DG394600 Rh5AG455300
rosa_wichuraiana	Rw2G002400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	316
AciI	CCGC	3 cut(s)	277, 289, 316
AcuI	CTGAAG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	3 cut(s)	97, 117, 158
AluI	AGCT	3 cut(s)	97, 117, 158
Alw21I	GWGCWC	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	227
BceAI	ACGGC	1 cut(s)	52
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	1 cut(s)	278
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	3 cut(s)	170, 216, 281
BmsI	GCATC	1 cut(s)	29
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	159
Bsa29I	ATCGAT	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bse1I	ACTGG	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	232
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	226
BsnI	GGCC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	296
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	3 cut(s)	277, 289, 316
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	151
BspDI	ATCGAT	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	170, 216, 281
BsrBI	CCGCTC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	296
Bst4CI	ACNGT	3 cut(s)	107, 188, 241
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	159
BstKTI	GATC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	296
BstXI	CCANNNNNNTGG	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	296
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	232
BsuTUI	ATCGAT	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	184, 290
Cac8I	GCNNGC	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	1 cut(s)	265
CviAII	CATG	3 cut(s)	46, 140, 193
CviJI	RGCY	8 cut(s)	75, 97, 117, 158, 217, 232, 266, 280
CviKI_1	RGCY	8 cut(s)	75, 97, 117, 158, 217, 232, 266, 280
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	1 cut(s)	298
DpnII	GATC	1 cut(s)	296
EciI	GGCGGA	1 cut(s)	304
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	226
FaeI	CATG	3 cut(s)	49, 143, 196
FaiI	YATR	5 cut(s)	47, 125, 141, 194, 245
FatI	CATG	3 cut(s)	45, 139, 192
Fnu4HI	GCNGC	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	232
HgaI	GACGC	1 cut(s)	265
Hin1II	CATG	3 cut(s)	49, 143, 196
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	2 cut(s)	41, 67
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	2 cut(s)	25, 149
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	3 cut(s)	38, 83, 241
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	3 cut(s)	107, 188, 241
HpyCH4V	TGCA	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	3 cut(s)	49, 143, 196
Kzo9I	GATC	1 cut(s)	296
LmnI	GCTCC	4 cut(s)	88, 214, 285, 313
LpnPI	CCDG	6 cut(s)	127, 185, 246, 252, 290, 296
LweI	GCATC	1 cut(s)	29
MalI	GATC	1 cut(s)	298
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	1 cut(s)	296
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	1 cut(s)	54
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	159, 205, 222, 267, 303
MwoI	GCNNNNNNNGC	1 cut(s)	286
NdeII	GATC	1 cut(s)	296
NlaIII	CATG	3 cut(s)	49, 143, 196
NlaIV	GGNNCC	3 cut(s)	170, 216, 281
NmeAIII	GCCGAG	1 cut(s)	51
NspI	RCATGY	1 cut(s)	196
PaeR7I	CTCGAG	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	41, 67
PkrI	GCNGC	1 cut(s)	279
PspN4I	GGNNCC	3 cut(s)	170, 216, 281
PspPI	GGNCC	1 cut(s)	111
PspXI	VCTCGAGB	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	296
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	1 cut(s)	296
Sau96I	GGNCC	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	5 cut(s)	99, 119, 160, 174, 252
SfaNI	GCATC	1 cut(s)	29
Sfr274I	CTCGAG	1 cut(s)	226
SinI	GGWCC	1 cut(s)	111
SlaI	CTCGAG	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
Sse9I	AATT	1 cut(s)	54
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	3 cut(s)	277, 289, 316
StuI	AGGCCT	1 cut(s)	232
TaaI	ACNGT	3 cut(s)	107, 188, 241
TaqI	TCGA	3 cut(s)	60, 132, 227
TasI	AATT	1 cut(s)	54
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	2 cut(s)	41, 67
TscAI	CASTG	2 cut(s)	191, 290
TspDTI	ATGAA	2 cut(s)	156, 260
TspRI	CASTG	2 cut(s)	191, 290
VpaK11BI	GGWCC	1 cut(s)	111
XceI	RCATGY	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.